Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1429 ATGGTGAGGCTTCTAGGGATTGCGTCTAGGGATTTGCCGTCACCGGCGGTTCAAATCGTCCCGCGTTTCTACCACGAGAGGGTTATTGATCACTACAACAACCCTCGGAATGTTGGATCGTTTGATAAGAACGATCCGACGGTCGGCACCGGCCTCGTCGGCGCGCCCGCCTGTGGCGATGTTATGAAGCTTCAGATCAAGGTTGATGAGAAGACTGGTAAGGTTGTAGATGCTTGCTTCAAGACGGAAATTGCAAAACATCTCTCCCTACCGCCTGTTAAGTTGCACTGCAGCATGCTTGCTGAGGATGCTATCAAGGCTGCTATTAAAGATTATGAAGCGAAGCGTGCAAAATTGGCAGATGGCTGCGAGCCAAACAGCGACCATGAGTTTGAAGGTAACACGACTTCTCCTGGCGCGATTTCTTTGGAACTAAACAACCTGCTCGACGGTCGTCGGATCTCCGAGTTTGTTTTGTATGCGTCAGAGAGTAAAAGGCAAGTTACTTTTCAAAGGTGTACGACGAGTGGTTGGTCAAGTAAAGTTGAGGAGTTGTGGGTTAGGCAGCTGGGTGGTGAAGGTTTGGTATTAATGGCTGGTCCTGGGGAAAACCTACATCCTGAACTTCGTGGTTTAAAGGGATTGAATCAGCAAGCTGAGGATAAAAACCAGCATGTTGACAAAGAGGGTGGCCTGAGTGGTGGTGAAAGGGACATGGCTCCGGTTACCGGCAATTCCATTCACAGGTCAGGTTCTCGTCCACAGCTAGACCTCAGCAAAGCAGAAATTCAGGGAAATTTTGAGGAGAGAGACCCCACAATTCTGTTGCCTAACCAATCTGATGATATATCTCACCTTGCTCTTGACATCGGCGGATCTCTCATCAAATTGGTGTACTTTTCAAGACATGAAGATCAATCGGTTGATGATAAGAGAAAGAGAAGCATGAAGCAGAGGCTGGGGTTATCAAATGGTAATAGAAGAAGCTATCCAGTTCTTGGTGGGAGGCTTCATTTTGTAAAGTTTGAGACAAGCAAGATTAACGAGTGTTTAGACTTCATCCATTCGAAGCAGCTACATCGTGGTGCTTGCAAAGATTTACCTCATTGGCATTCAGACTCAGCAAATGAAAATGCCGTCATTAAGGCTACAGGTGGAGGGGCATACAAGTTTGCAGATCTTTTCAAAGAAAGACTTGGAGTAAGCCTTGATAAAGAAGATGAAATGGATTGTCTTGTGGCTGGAGCAAATTTTCTGCTAAAGGCAATACGTCACGAAGCTTTCACTCATATGGAGGGCAAAAAAGAGTTTGTGCAACTTGACCATAACGAATTGTTTCCTTATCTGCTTGTCAACATTGGATCTGGTGTCAGCATGATCAAGGTTGATGGCGATGGGAAATTTCAGAGAGTTAGTGGGACAAATGTTGGAGGGGGCACTTACTGGGGCTTAGGAAGACTGTTAACAAAATGTAATAGCTTTGATGAGTTGTTAGAGCTTAGTCAAAAGGGAGATAATGGCACAATTGACATGCTTGTTGGGGACATATATGGTGGCATGGATTACTCCAAGATTGGTCTCTCTGCGTCAACGATTGCATCTAGTTTTGGCAAGACCATCTCAGTGAACAAGGAGCTTAAAGACTACAGACCAGAAGATATCTCATTGTCTCTCTTGCGAATGATCTCGTATAACATTGGACAGATTTCGTACTTGAATGCTTTACGGTTTGGACTTAAGAGAATATTTTTTGGAGGATTCTTTATCAGGGGACATGCATATACCATGGATACAATTTCTTTCGCAGTTCAATTCTGGTCGAAAGGAGAAGCACAGGCAATGTTCTTGCGTCATGAGGGGTTCTTAGGAGCCTTAGGTGCATTCATGAGCTATGAAAAGCATGGTCTTGATGATCTATTGGCCCATCAGTTAGTCGAAAGGTTTCCTATGGGTGCACCATACACGGGAGGGAAAGTTCATGGTCCTCCACTTGGTGATTTGAATGAAAAGATTTCTTGGATGGAGAAATTTTTGCAGAAGAGAACAGAAATTACTGCACCTGTCCCTATGGCTCCCCCTGGAACAACTGGACTTGGAGGCTTTGAAGTCCCTTTATCCAAAGGAGAAACCCTGCGATCTGATGCAAGTGCCCTAAATGTCGGTGTACTTCACCTGGTACCCACTTTGGAGGTGTTTCCACTCTTAGCTGATCCAAAGACATATGAACCTAATACAATTGATCTCTCTGATCACAGTGAGTTGGAGTACTGGTTCACCGTGCTTTCAGAGCATCTAGCAGACCTTGTTGATAAGGCTGTTGCAAGTGAAGGTGGGACTGATGATGCCAAGAGAAGGGGTGATGCATTTGCTCGGGCATTTTCTGCCCACTTGAGGAGGTTGATGGAGGAACCTACGGCATATGGAAAGTTGGGTTTGGCTAATCTTCTGGAACTGAGGGAAGAGTGCCTGAGGGAATTCCAATTTTTTGATGCCTATAGAAGCATAAAGCAGAGGGAGAATGAGGCATCACTTGCTGTGTTGCCTGACCTGCTGTTGGAACTTGATAGCATGAATGAGGAAGCAAGACTGCTTACCCTAATTGAAGGTGTTCTTGCTGCAAACATTTTTGATTGGGGCTCTCGTGCTTGTGTTGATCTCTATCACAAGGGGACAATTATTGAGATTTACCGAATGAGTCGCAACAAGATGCAGAGGCCATGGCGGGTTGATGATTTTGATGTCTTCAGAGAGAGAATGTTAGGATCTGGGGACGAGAGACCCCTTCCACATAAAAGAGCTCTTCTCTTTGTGGACAATTCAGGTGCTGATGTTGTTCTAGGGATGCTTCCCTTGGCAAGGGAACTCCTCCGACGTGGAACGGAAGTTGTTTTAGTTGCAAACTCTCTTCCTGCCCTAAATGATGTTACCGCAATGGAGCTTCCTGATATTGTAGCTGAGGCTGCCAAGCATTGTGACATACTACGTAGAGCTGCCGAAGCAGGGGGACTGATTGTGGATGCCATGATCGACTCTGCGGATGGTTCTAAAGAGAGATCATCTTTTGTTCCCTTGATGGTTGTTGAAAATGGGTGTGGTAGTCCATGTATAGATCTAAGGCAGGTCAGCTCTGAGTTGGCTGCCGCAGCTAAAGATGCTGATTTGGTTATCTTGGAAGGGATGGGAAGAGCCCTTCACACCAACTTCAATGCTAAGTTTAAATGTGATGCTTTGAAGCTTGCCATGGTGAAAAATCAGAGGCTGGCAGAAAAATTGATCAAAGGAAACATATACGATTGTGTCTGCAGATACGAACCATCCCACTGA 3324 45.43 MVRLLGIASRDLPSPAVQIVPRFYHERVIDHYNNPRNVGSFDKNDPTVGTGLVGAPACGDVMKLQIKVDEKTGKVVDACFKTEIAKHLSLPPVKLHCSMLAEDAIKAAIKDYEAKRAKLADGCEPNSDHEFEGNTTSPGAISLELNNLLDGRRISEFVLYASESKRQVTFQRCTTSGWSSKVEELWVRQLGGEGLVLMAGPGENLHPELRGLKGLNQQAEDKNQHVDKEGGLSGGERDMAPVTGNSIHRSGSRPQLDLSKAEIQGNFEERDPTILLPNQSDDISHLALDIGGSLIKLVYFSRHEDQSVDDKRKRSMKQRLGLSNGNRRSYPVLGGRLHFVKFETSKINECLDFIHSKQLHRGACKDLPHWHSDSANENAVIKATGGGAYKFADLFKERLGVSLDKEDEMDCLVAGANFLLKAIRHEAFTHMEGKKEFVQLDHNELFPYLLVNIGSGVSMIKVDGDGKFQRVSGTNVGGGTYWGLGRLLTKCNSFDELLELSQKGDNGTIDMLVGDIYGGMDYSKIGLSASTIASSFGKTISVNKELKDYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVQFWSKGEAQAMFLRHEGFLGALGAFMSYEKHGLDDLLAHQLVERFPMGAPYTGGKVHGPPLGDLNEKISWMEKFLQKRTEITAPVPMAPPGTTGLGGFEVPLSKGETLRSDASALNVGVLHLVPTLEVFPLLADPKTYEPNTIDLSDHSELEYWFTVLSEHLADLVDKAVASEGGTDDAKRRGDAFARAFSAHLRRLMEEPTAYGKLGLANLLELREECLREFQFFDAYRSIKQRENEASLAVLPDLLLELDSMNEEARLLTLIEGVLAANIFDWGSRACVDLYHKGTIIEIYRMSRNKMQRPWRVDDFDVFRERMLGSGDERPLPHKRALLFVDNSGADVVLGMLPLARELLRRGTEVVLVANSLPALNDVTAMELPDIVAEAAKHCDILRRAAEAGGLIVDAMIDSADGSKERSSFVPLMVVENGCGSPCIDLRQVSSELAAAAKDADLVILEGMGRALHTNFNAKFKCDALKLAMVKNQRLAEKLIKGNIYDCVCRYEPSH 1107
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27830323 27852630 + CaPI482276_01g014290.1 Cam01g1429 118511

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1429 1107 SUPERFAMILY Actin-like ATPase domain 398 631 IPR043129 -
Cam01g1429 1107 Gene3D - 744 828 IPR035073 -
Cam01g1429 1107 NCBIfam type II pantothenate kinase 285 630 IPR004567 GO:0004594(InterPro)|GO:0005524(InterPro)|GO:0015937(InterPro)
Cam01g1429 1107 MobiDBLite consensus disorder prediction 220 234 - -
Cam01g1429 1107 SUPERFAMILY SufE/NifU 23 116 - -
Cam01g1429 1107 Gene3D - 83 118 - -
Cam01g1429 1107 FunFam Pantothenate kinase 2 426 611 - -
Cam01g1429 1107 Gene3D - 23 82 - -
Cam01g1429 1107 Gene3D - 277 439 - -
Cam01g1429 1107 Gene3D Uncharacterised protein PF01937, DUF89, domain 3 908 1105 - -
Cam01g1429 1107 CDD IscU_like 24 108 IPR002871 GO:0005506(InterPro)|GO:0016226(InterPro)|GO:0051536(InterPro)
Cam01g1429 1107 PANTHER PANTOTHENATE KINASE 256 1103 IPR004567 GO:0004594(PANTHER)|GO:0004594(InterPro)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0015937(PANTHER)|GO:0015937(InterPro)
Cam01g1429 1107 Coils Coil 209 229 - -
Cam01g1429 1107 FunFam Pantothenate kinase 1 285 425 - -
Cam01g1429 1107 Pfam Damage-control phosphatase ARMT1-like domain 781 1091 IPR002791 -
Cam01g1429 1107 Gene3D - 507 620 - -
Cam01g1429 1107 MobiDBLite consensus disorder prediction 216 255 - -
Cam01g1429 1107 FunFam Pantothenate kinase 2 743 829 - -
Cam01g1429 1107 SUPERFAMILY AF1104-like 722 1105 IPR036075 -
Cam01g1429 1107 Pfam Fumble 285 629 IPR004567 GO:0004594(InterPro)|GO:0005524(InterPro)|GO:0015937(InterPro)
Cam01g1429 1107 SUPERFAMILY Actin-like ATPase domain 283 426 IPR043129 -
Cam01g1429 1107 FunFam Pantothenate kinase 2 277 439 - -
Cam01g1429 1107 Pfam NifU-like N terminal domain 24 82 IPR002871 GO:0005506(InterPro)|GO:0016226(InterPro)|GO:0051536(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1429 K24265 - - csv:101203117 1724.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1429 Cam-Chr1:27830323 Cam02g0340 Cam-Chr2:4149220 1.40E-54 dispersed
Cam01g1429 Cam-Chr1:27830323 Cam05g2735 Cam-Chr5:34637850 3.00E-134 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g757 Blo04g00734 . . . . . . . . Cmo18g00128 . . . . . . . . . . . . . . . . . . . . . . Cone16ag0101 Cone13ag0142 . Lsi02g00371 Csa01g00852 Chy12g01267 Cme12g01694 . . . Bda14g00811 . Bpe15g00638 Bma03g00781 . . . . . Cma18g00170 . Car18g00161 Cpe09g01025 . Bhi08g01609 Tan05g2008 . Lac10g0449 Hepe07g2227 . . Cla01g01300 Cam01g1429 Cec01g1464 Cco01g1460 Clacu01g1366 Cmu01g1272 Cre01g1264 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005817 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 3 1 39