Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1435 ATGAGGAATTTAAACTGGTTTAAGCCAATTTCGATTAATGGGAAGCCTGGGAGGAGGCTTTCACTAGGAGAATACCAGCGTGCTGTGTCGTGGTCTAAGTATTTGGTGTCTTCAGGAGCAGAGATAAAGGGAGAGGGAGAAGAGGAATGGAGTGCTGACATGTCCCAGTTGTTCATTGGCTTCAAATTTGCTACTGGAAGGCACAGTAGGATTTACAGAGGTGTGTATAAACAGAGGGATGTTGCAATTAAGCTGATAAGCCAGCCTGAGGAGGATGAAAATTTGGCTAACTTTCTTGAGAATCAGTTCATTTCAGAGGTGGCATTGCTGTTTCGATTGAGACATCCCAATATCATCACTTTCATTGCAGCTTGCAAGAAACCTCCAGTGTTTTGTATTATCACGGAGTATATGACAGGAGGTTCGTTAAGAAAATATCTCCATCAACAAGAGCCACATTCCGTTCCGCTGAACTTGGTTCTGAAACTAGCCCTCGAAATCTCACGTGGGATGCAGTACCTTCATTCTCAGGGAATACTCCACAGAGATCTCAAATCAGAAAATCTCTTACTCGGTGAAGATATGTGTGTTAAGGTAGCAGATTTCGGTATCTCATGCTTAGAATCTCAATGTGGAAGTGCGAAGGGATTCACCGGAACTTACCGCTGGATGGCACCTGAAATGATCAAAGAAAAACACCACACTAAGAAAGTTGATGTTTATAGCTTTGGCATTGTCTTATGGGAGCTCTTAACTGCATTGACACCATTTGATAACATGACTCCTGAACAGGCAGCATTTGCAGTCTGCCAGAAGAATGCAAGACCACCGCTGCCTTCTGCTTGCCCGCAGGCATTTCGTCATCTGATCAAGAGATGCTGGTCGAGAAATCCCAACAAGCGACCGCACTTTGATGAGATCGTTTCAATTTTGGAAACTTATGCGGAATGTTACAATGAAGATCCAGATTTTTTTGGTCATTACGTCCCCTCGTCTAGATATACTGCTTTGCAATGCTTACCAAAATGGGTTGACCAAGAAGAAAAGGAGGTTCAGCAAGATGGGAAAGCTGAAGACCCATCTCCAACAGCAGTTGCATCTAGTGCGAGTCAAGCTACAAGCTCAACCCAAACTTTACAGCCTTCAGCTTCTGCACCCACTGCACCCCTCACGATTGTTTCATCTACGGGTACATTGAAGGGGTCTGAATTTCATTGGTCTGGTGTACTTCTAGCTGTAGGACTGCTGTCAATTTCAGGTGCTGTAACAGCATTCATAATTAAGAACAAAATAATTCCAAGAATGAAATCCTGGATACGCATGTTGGTAAACGATGGACATGAAGAGATTGTAAAAAGAGAGAGTTCCATTTCAAGTTTGGGAGAAGAAGCAGCTTCAGAAGCGGCAATTGATCTAGCAAGAGCAAGCCAGGATATGTTGAACTCAAAATATCAAGCTTTCGATGTTGAAGCACCTTCAGAAGTGGCAATTGATCTAGCAAGAGCAAGCCAGGATATTTTGAAAGGCGATTCAGAACGAACAAATTATTCTGGCGAAACAGCATCTGGTAACAACAATCCTTTACACAAATTGTAG 1596 43.05 MRNLNWFKPISINGKPGRRLSLGEYQRAVSWSKYLVSSGAEIKGEGEEEWSADMSQLFIGFKFATGRHSRIYRGVYKQRDVAIKLISQPEEDENLANFLENQFISEVALLFRLRHPNIITFIAACKKPPVFCIITEYMTGGSLRKYLHQQEPHSVPLNLVLKLALEISRGMQYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCLESQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTALTPFDNMTPEQAAFAVCQKNARPPLPSACPQAFRHLIKRCWSRNPNKRPHFDEIVSILETYAECYNEDPDFFGHYVPSSRYTALQCLPKWVDQEEKEVQQDGKAEDPSPTAVASSASQATSSTQTLQPSASAPTAPLTIVSSTGTLKGSEFHWSGVLLAVGLLSISGAVTAFIIKNKIIPRMKSWIRMLVNDGHEEIVKRESSISSLGEEAASEAAIDLARASQDMLNSKYQAFDVEAPSEVAIDLARASQDILKGDSERTNYSGETASGNNNPLHKL 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27902183 27908322 - CaPI482276_01g014350.1 Cam01g1435 118517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1435 531 Gene3D Phosphorylase Kinase; domain 1 47 139 - -
Cam01g1435 531 FunFam Serine/threonine-protein kinase isoform 1 47 139 - -
Cam01g1435 531 MobiDBLite consensus disorder prediction 510 531 - -
Cam01g1435 531 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam01g1435 531 SUPERFAMILY Protein kinase-like (PK-like) 46 311 IPR011009 -
Cam01g1435 531 CDD STKc_MAP3K-like 66 311 - -
Cam01g1435 531 PRINTS Tyrosine kinase catalytic domain signature 282 304 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam01g1435 531 PRINTS Tyrosine kinase catalytic domain signature 135 148 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam01g1435 531 PRINTS Tyrosine kinase catalytic domain signature 173 191 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam01g1435 531 PRINTS Tyrosine kinase catalytic domain signature 219 229 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam01g1435 531 PRINTS Tyrosine kinase catalytic domain signature 238 260 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam01g1435 531 ProSiteProfiles Protein kinase domain profile. 57 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g1435 531 MobiDBLite consensus disorder prediction 363 387 - -
Cam01g1435 531 Gene3D Transferase(Phosphotransferase) domain 1 140 359 - -
Cam01g1435 531 SMART serkin_6 57 315 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g1435 531 MobiDBLite consensus disorder prediction 348 387 - -
Cam01g1435 531 Pfam Peroxisomal membrane protein PEX14-like, central 403 484 IPR054154 -
Cam01g1435 531 Pfam Protein tyrosine and serine/threonine kinase 63 311 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam01g1435 531 PANTHER SERINE-THREONINE PROTEIN KINASE 55 312 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1435 Cam-Chr1:27902183 Cam01g2212 Cam-Chr1:34632598 4.40E-112 dispersed
Cam02g0405 Cam-Chr2:4785782 Cam01g1435 Cam-Chr1:27902183 1.80E-66 transposed
Cam05g0554 Cam-Chr5:4914326 Cam01g1435 Cam-Chr1:27902183 7.90E-18 transposed
Cam05g1704 Cam-Chr5:25378121 Cam01g1435 Cam-Chr1:27902183 1.30E-67 transposed
Cam11g1142 Cam-Chr11:22404977 Cam01g1435 Cam-Chr1:27902183 2.30E-79 transposed
Cam01g1435 Cam-Chr1:27902183 Cam10g1252 Cam-Chr10:25943712 5.90E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84876 PF07714 PK_Tyr_Ser-Thr 2.10E-65 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1435 - - - 0.0