Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1436 ATGGCTATTCGAGGAGTCGATTTCAAATGGTACGACGGGTTCTTCTTGTCGATGCTTGCTACTAGTATAATAATTGTGACCATCAATTGGAGAAGGTACAATACTTGTACGTATCCTTTGCACATATGGATTGTGGTTGATTATACTTCTGTGTTTGCATTTCGCCTTTTGCTGTTCATCGATAATGCACTTTCAGCTGGAATGGGATTAGATTTTGGATGGCAGCAGCGATATGCTCGGTTTTGTGGAAGAGTTGTGGTTCTTTCTATCCTCTCTCTATTGCTCTACCCCTTTCTATGTGCCTGGACTGTAATTGGCACCTTGTGGTTTAGAGATGCTAAAGATTGTTTGCCTGAAGAAGGACAGAAATGGGGTTTCCTCATTTGGTTGCTTTTCAGCTACTGTGCCCTCCTTTGCATTGCCTGCATGTCAGTTGGAAAGTGGCTAGCGCGTAGGCAAGCGCACTTGTTCCGTGCCCAACAAGGCATACCAGTATCAGAATATGGGGTACTGGTTGATATGATTAGAGTTCCTGATTGGGCATATGAAGCTGCAGGACTGGAAACACGAGGCATAGGCCAAGATGCTACTGGGTACCATCCCGGGCTGTTCTTAACCTCGGCTCAGAGGGAAGCTGTGGAAGCTCTCATCCAGGAACTTCCAAAGTTCAGGCTGAAGGCTGTCCCAACTGATTGCAGTGAATGCCCTATTTGCCTTGAAGAGTTCCATGTAGGGAATGAGGTCCGTGGTATGCCATGTGCTCATAATTTCCACGTCGAATGTATCGACGAGTGGCTTCGTCTGAATGTTAAATGTCCTCGATGCCGCTCCTCTGTCTTCCCAAATCTCGACCTCAGCGCTCTTTCTAACCTGCATTCAGACACAGAACAAACATCTGACAATGCTTTTGTAACAACCCAACCTTCAAGTCTACCAAGATCGACTCCAACCCGTGCAGCTCATACCGAAAACACAACAGACCTCTATACTGACACTGCCTTAGAAGCTGTGGAGAATGGAAACTCACCTCTGCCATCTGCTTCTCCACATTGA 1053 46.44 MAIRGVDFKWYDGFFLSMLATSIIIVTINWRRYNTCTYPLHIWIVVDYTSVFAFRLLLFIDNALSAGMGLDFGWQQRYARFCGRVVVLSILSLLLYPFLCAWTVIGTLWFRDAKDCLPEEGQKWGFLIWLLFSYCALLCIACMSVGKWLARRQAHLFRAQQGIPVSEYGVLVDMIRVPDWAYEAAGLETRGIGQDATGYHPGLFLTSAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGMPCAHNFHVECIDEWLRLNVKCPRCRSSVFPNLDLSALSNLHSDTEQTSDNAFVTTQPSSLPRSTPTRAAHTENTTDLYTDTALEAVENGNSPLPSASPH 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27915425 27918679 - CaPI482276_01g014360.1 Cam01g1436 118518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1436 350 SMART ring_2 235 275 IPR001841 -
Cam01g1436 350 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Cam01g1436 350 MobiDBLite consensus disorder prediction 297 324 - -
Cam01g1436 350 FunFam E3 ubiquitin-protein ligase SIS3 203 281 - -
Cam01g1436 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Cam01g1436 350 Pfam Ring finger domain 234 276 IPR001841 -
Cam01g1436 350 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 341 IPR044793 GO:0004842(InterPro)|GO:0010182(InterPro)
Cam01g1436 350 SUPERFAMILY RING/U-box 217 284 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1436 Cam-Chr1:27915425 Cam05g0105 Cam-Chr5:1356550 1.90E-10 dispersed
Cam01g1436 Cam-Chr1:27915425 Cam06g1842 Cam-Chr6:29442595 1.40E-162 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1436 K16284 - csv:101222360 695.271