Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1437 ATGTACGCGTCGTCCTCCGTTTCGATCGCAGCCCTTCCTTGCCCACGCTTGCTTCAGCCTCCATTGAAGCCCTCCGCGTGCTTTCAAACTTCTTTCAACCGCCGCCATCTGATTACCACTCTGCTCTCTGTCTTTACCCCTTCTTTTATCGATTTTACTCTGCCCTGTTCTTCTGATTTGGTTGCTGAAGCTCGTGGTCTGTTTCAAATGCCCCCTCTTCGTCTCGTCAATCGGTACTTTCTGGTGAGGGCAGGGGAGTCTGAATTTGATAGTTTTGGAATAATTAACACAAACCCAGTTGCAAAGACATCTGTTGATAGTGGATTATCTGAGGAAGGGAAGAAGCAAACTGTTAAAGCAGCTTTTAAGTTGAAGGAAATGGGAGCCTGTGAAAATGGTTGCTGGATTTGGCCCTCTATTACACAAAGGGCTTATCAAGCAGCAGAGATTATTGCATCAGTTAATGGTGTGAATCGAAGTTATATAGTTCCTGAATACAGTTTTCTTGATGCCCGTGGACTTGGAGCTTATGAAGGCAAGAGATTGGATTCTGTGTCAGAAGTATATGCTTCAGATACCATTTCTTCAAGTATCAAACCTCCTCCAATAGATGATGGCACCCCAAACGAGAGCGTATCTGATGTCTTTGTTCGCGTAACACAACTGATGTCGATTCTCGAAACCCAATACTCTGGTGATACTATCATTATTGTCTCACCAGATTCTGATAATTTGACAGTTCTTCAAGCTGGTTTAATTGGCCTCGACTTGCGAAGGCACCATGATCTTTCCTTTGCTCCCGGGGAGGTTCGCTTCGTTGATATACGCAGCATCCCTTCCTATAAGCAACCAGCTTCAGCTACTTGTGGTTACAATTATGCTCTGAAATGGCAGTCATTACGCTTTACAGTTGTACAAGCAACGCTGCAGAGAAATCAGATAACTGCTCAACCCCATGGCCGAAAGGGATCCATTCCATTCTATCCTTCTTCAATTCCTTCTACCCTTTTCCACTCGCCATAA 1023 44.67 MYASSSVSIAALPCPRLLQPPLKPSACFQTSFNRRHLITTLLSVFTPSFIDFTLPCSSDLVAEARGLFQMPPLRLVNRYFLVRAGESEFDSFGIINTNPVAKTSVDSGLSEEGKKQTVKAAFKLKEMGACENGCWIWPSITQRAYQAAEIIASVNGVNRSYIVPEYSFLDARGLGAYEGKRLDSVSEVYASDTISSSIKPPPIDDGTPNESVSDVFVRVTQLMSILETQYSGDTIIIVSPDSDNLTVLQAGLIGLDLRRHHDLSFAPGEVRFVDIRSIPSYKQPASATCGYNYALKWQSLRFTVVQATLQRNQITAQPHGRKGSIPFYPSSIPSTLFHSP 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27918874 27924097 - CaPI482276_01g014370.1 Cam01g1437 118519

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1437 340 Gene3D - 77 284 IPR029033 -
Cam01g1437 340 Pfam Histidine phosphatase superfamily (branch 1) 80 274 IPR013078 -
Cam01g1437 340 PANTHER PHOSPHOGLYCERATE MUTASE FAMILY PROTEIN 24 288 - -
Cam01g1437 340 SUPERFAMILY Phosphoglycerate mutase-like 78 275 IPR029033 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1437 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g735 . . . . Bpe12g00593 . . . . Cmo18g00124 Cma10g00129 Cma11g00101 Car10g00121 Car11g00100 Sed08g0132 Cpe20g00235 . Bhi02g00435 Tan09g2237 Cmetu02g1086 . Hepe09g0195 . . Cla06g01657 Cam06g1842 Cec06g1893 Cco06g1898 Clacu06g1802 . Cre06g2561 . . . Cone19ag0136 . Csa01g00843 Chy12g01273 . . . . . . . . Bma08g00169 . Cmo10g00136 Cmo11g00101 . . Car13g00734 Car18g00155 Cpe09g01032 Cpe18g00841 Bhi08g01598 . . Lac10g0440 . . . Cla01g01293 Cam01g1437 Cec01g1471 Cco01g1455 Clacu01g1360 Cmu01g1265 Cre01g1271 Lsi06g01547 Csa01g00157 Chy02g02573 Cme02g01963
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012999 0 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 27