Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1455 ATGACTTTCCCTTTCCCTTTACTTTTCCTCATTACTATCACCATCTCCTTTTCCCTCCCCTTCCCCTCTCTTGTTCACTCCAAACTCACCCTTGGTTATTACCAAAAAACCTGTCCCGACTTCGAGAAGATCATTCGCGAAACTGTCACCAATAAACAAATCACCAGCCCTGTCACTGCCGCTGGAACCCTTCGCCTCTTCTTCCACGACTGCATGGTTGATGGTTGCGACGCCTCCATCCTCATTTCCTCCAACTCCTTCAACCAAGCCGAGCGTGAGGCTGAAATCAACCATTCCCTCTCTGGTGACGCCTTCGACGTCGTCGTCCATGCTAAGACCAACCTCGAACTTGCTTGCCCTGGCATTGTCTCTTGTTCCGACATCTTGGCACAGGCAACTCGAGATTTAGTGGTGATGGTGGGAGGGCCATTCTACAACGTTCGATTGGGGAGAAAAGATGGAATGTTATCAAAAGTAGAAAACGTGGAAGGGAACCTTCCAAAAGTGGACTTCTCAATAGACAAACTCATCGATTTCTTCACCCAAAGAGGCTTCACCATCCAAGAACTAGTCGCCCTCTCCGGAGGCCACACCATCGGCTTCTCCCACTGCAAGGAATTCTCCGACCGCCTCTTTAACTTCAACGCCATGTCACCCACTGACCCCGACATTTACCCCAAATTTGCCGAAAAGCTCAAGGCCATGTGTGCCAATTACCTCACAGACACTGCCATGTCAGCTTTCAATGACGTCATGACACCTGGCAAATTCGACAACATGTACTTCCAGAATCTTCCACGTGGCCTTGGCCTACTCGCTACTGACAACGCCCTCTATAAAGACCCTAGGACCAAGCCGTTTGTGGATCTTTACGCCGTTAATCAAACGGCATTTTTTAAGGACTTTGCTCATGCAATGGAGAAGCTTAGCGTTTACGGCGTGAAGACGGGAAGGAAAGGGGAGGTTCGACGAAGGTGTGACCTCTTTAATTCCATTTAG 999 49.25 MTFPFPLLFLITITISFSLPFPSLVHSKLTLGYYQKTCPDFEKIIRETVTNKQITSPVTAAGTLRLFFHDCMVDGCDASILISSNSFNQAEREAEINHSLSGDAFDVVVHAKTNLELACPGIVSCSDILAQATRDLVVMVGGPFYNVRLGRKDGMLSKVENVEGNLPKVDFSIDKLIDFFTQRGFTIQELVALSGGHTIGFSHCKEFSDRLFNFNAMSPTDPDIYPKFAEKLKAMCANYLTDTAMSAFNDVMTPGKFDNMYFQNLPRGLGLLATDNALYKDPRTKPFVDLYAVNQTAFFKDFAHAMEKLSVYGVKTGRKGEVRRRCDLFNSI 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28122806 28124061 + CaPI482276_01g014550.1 Cam01g1455 118537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1455 332 Gene3D Peroxidase, domain 2 167 309 - -
Cam01g1455 332 CDD secretory_peroxidase 28 329 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cam01g1455 332 PRINTS Plant peroxidase signature 122 132 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g1455 332 PRINTS Plant peroxidase signature 188 200 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g1455 332 PRINTS Plant peroxidase signature 248 263 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g1455 332 PRINTS Plant peroxidase signature 141 156 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g1455 332 PRINTS Plant peroxidase signature 304 317 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g1455 332 PRINTS Plant peroxidase signature 62 82 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g1455 332 PRINTS Plant peroxidase signature 264 281 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g1455 332 PRINTS Plant peroxidase signature 38 57 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g1455 332 PRINTS Plant peroxidase signature 103 116 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g1455 332 SUPERFAMILY Heme-dependent peroxidases 29 330 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g1455 332 ProSitePatterns Peroxidases active site signature. 60 71 IPR019794 GO:0004601(InterPro)
Cam01g1455 332 ProSitePatterns Peroxidases proximal heme-ligand signature. 189 199 IPR019793 -
Cam01g1455 332 Pfam Peroxidase 46 293 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g1455 332 FunFam Peroxidase 167 309 - -
Cam01g1455 332 PANTHER - 16 330 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g1455 332 Gene3D - 32 330 - -
Cam01g1455 332 PRINTS Haem peroxidase superfamily signature 141 153 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g1455 332 PRINTS Haem peroxidase superfamily signature 250 265 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g1455 332 PRINTS Haem peroxidase superfamily signature 189 204 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g1455 332 PRINTS Haem peroxidase superfamily signature 123 140 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g1455 332 PRINTS Haem peroxidase superfamily signature 60 74 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g1455 332 FunFam Peroxidase 32 177 - -
Cam01g1455 332 ProSiteProfiles Plant heme peroxidase family profile. 28 330 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1455 Cam-Chr1:28122806 Cam01g1788 Cam-Chr1:31443952 4.50E-78 dispersed
Cam03g0646 Cam-Chr3:7322370 Cam01g1455 Cam-Chr1:28122806 7.20E-71 transposed
Cam05g1921 Cam-Chr5:28139455 Cam01g1455 Cam-Chr1:28122806 5.60E-70 transposed
Cam01g1455 Cam-Chr1:28122806 Cam10g1222 Cam-Chr10:25593400 2.60E-110 wgd
Cam01g1455 Cam-Chr1:28122806 Cam06g1820 Cam-Chr6:29262848 5.00E-122 wgd
Cam01g1455 Cam-Chr1:28122806 Cam09g1921 Cam-Chr9:33907442 4.90E-109 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1455 K00430 - csv:101220163 600.127