Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1460 ATGGGAATTATGGAATACCATCAAACTTTTCATAATTCCAACACATATTTTGATCAATCTTACTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATGTCTCACTACTTTCAAAGGCCATTCTTCTTACATCTCTTCTCTAACTCTCGCCGGAAAATTCCTCTACTCTGGTTCCTCCGACAAAGAAATCCGATCATGGAGACGAAACCCATCACAAAACTGTGAAGAAAACCAGGAAGAGTTTCAGAACACTATGGTTACAGCCGGACATGGCGCAGTGAAATCCCTTGTGGTTTCATCTGACAAACTTTACAGTGCCCATCAAGACCACAAAATTCGAGTTTGGAAAATCTCTAACGATTACGATCACCATCAAAAGTACACACGTTTAGCTACTCTCCCGACGCTCGGCGATCGGACGGCCAGGCTTTTGACACCCAATAATCAAGTCCAGATCCGACGGCACAAGAAATGCACTTGGGTTCATCATGTTGATACCGTTTCAGCTCTTGCTCTGTCAAACGACGAGTCGCTTCTCTATTCCGTCTCGTGGGATCGGACCCTCAAAATCTGGCGGACTTCCGATTTTAAATGCTTGGAGTCCATCACCGGAGCTCACGACGATGCGATAAACGCCGTCGCGCTCGCCGGAGACGGTGACGTGTATACTGGATCGACGGACAAGAGGATCAAAGTCTGGAGGAAAAACCCAGATGGGAAAAGGCATTTTTTGGTCCAAACACTCGAGAAACACAGCTCCGGAATTAATGCGTTGGCTCTCGCCGGCGATGGGTTGGTTTTATTTTCCGGCGCCTGCGACAAGTCGGTTTTGGTTTGGGAGAAGGAGGAAGGGGGTGGGTTAATGGAGTTGGTGGGTGTGTTGAGAGGCCATTCGAAGGCCATATTGTGTTTGGCTGTGGTGTTGGATTTGGTTTGTAGTGGTTCGGCGGACAAGACGATCAGAATTTGGAAGAAGGTCGTCGCCGGGAATTATGTGTGTTTGAGGGTTTTGGAAGGGCATAACGGTCCCGTCAAGTGTTTGGCGGCGGCGGTTGATCGGTGCAACCAAACCGACATGTCGTTTATGGTTTATAGTGGTGGTTTGGATTGTGATATCAAGGCGTGGCAGATTTCTGTTCCTCTTGTTTAA 1173 47.06 MGIMEYHQTFHNSNTYFDQSYSSSSSSSSSSSSSSSSSSSCLTTFKGHSSYISSLTLAGKFLYSGSSDKEIRSWRRNPSQNCEENQEEFQNTMVTAGHGAVKSLVVSSDKLYSAHQDHKIRVWKISNDYDHHQKYTRLATLPTLGDRTARLLTPNNQVQIRRHKKCTWVHHVDTVSALALSNDESLLYSVSWDRTLKIWRTSDFKCLESITGAHDDAINAVALAGDGDVYTGSTDKRIKVWRKNPDGKRHFLVQTLEKHSSGINALALAGDGLVLFSGACDKSVLVWEKEEGGGLMELVGVLRGHSKAILCLAVVLDLVCSGSADKTIRIWKKVVAGNYVCLRVLEGHNGPVKCLAAAVDRCNQTDMSFMVYSGGLDCDIKAWQISVPLV 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28176908 28178080 - CaPI482276_01g014600.1 Cam01g1460 118542

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1460 390 FunFam BnaA09g28200D protein 158 246 - -
Cam01g1460 390 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 302 332 - -
Cam01g1460 390 Pfam WD domain, G-beta repeat 205 241 IPR001680 GO:0005515(InterPro)
Cam01g1460 390 Pfam WD domain, G-beta repeat 40 74 IPR001680 GO:0005515(InterPro)
Cam01g1460 390 Pfam WD domain, G-beta repeat 340 383 IPR001680 GO:0005515(InterPro)
Cam01g1460 390 Pfam WD domain, G-beta repeat 252 287 IPR001680 GO:0005515(InterPro)
Cam01g1460 390 Pfam WD domain, G-beta repeat 167 199 IPR001680 GO:0005515(InterPro)
Cam01g1460 390 Pfam WD domain, G-beta repeat 297 331 IPR001680 GO:0005515(InterPro)
Cam01g1460 390 Pfam WD domain, G-beta repeat 94 123 IPR001680 GO:0005515(InterPro)
Cam01g1460 390 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 256 288 - -
Cam01g1460 390 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 168 199 - -
Cam01g1460 390 SUPERFAMILY WD40 repeat-like 38 386 IPR036322 GO:0005515(InterPro)
Cam01g1460 390 ProSiteProfiles Trp-Asp (WD) repeats profile. 211 241 IPR001680 GO:0005515(InterPro)
Cam01g1460 390 Gene3D - 133 388 IPR015943 GO:0005515(InterPro)
Cam01g1460 390 CDD WD40 41 384 - -
Cam01g1460 390 ProSiteProfiles Trp-Asp (WD) repeats profile. 45 74 IPR001680 GO:0005515(InterPro)
Cam01g1460 390 ProSiteProfiles Trp-Asp (WD) repeats profile. 168 209 IPR001680 GO:0005515(InterPro)
Cam01g1460 390 SMART WD40_4 203 242 IPR001680 GO:0005515(InterPro)
Cam01g1460 390 SMART WD40_4 338 384 IPR001680 GO:0005515(InterPro)
Cam01g1460 390 SMART WD40_4 38 75 IPR001680 GO:0005515(InterPro)
Cam01g1460 390 SMART WD40_4 88 124 IPR001680 GO:0005515(InterPro)
Cam01g1460 390 SMART WD40_4 295 332 IPR001680 GO:0005515(InterPro)
Cam01g1460 390 SMART WD40_4 161 200 IPR001680 GO:0005515(InterPro)
Cam01g1460 390 SMART WD40_4 249 288 IPR001680 GO:0005515(InterPro)
Cam01g1460 390 ProSiteProfiles Trp-Asp (WD) repeats profile. 256 297 IPR001680 GO:0005515(InterPro)
Cam01g1460 390 Gene3D - 11 132 IPR015943 GO:0005515(InterPro)
Cam01g1460 390 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 19 386 IPR045182 -
Cam01g1460 390 ProSiteProfiles Trp-Asp (WD) repeats profile. 302 332 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1460 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1460 Cam-Chr1:28176908 Cam06g1902 Cam-Chr6:30001714 9.00E-46 dispersed
Cam01g1460 Cam-Chr1:28176908 Cam05g2804 Cam-Chr5:35178777 1.50E-48 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g871 . . . . . Bpe13g00263 . . . . . . . . . . . Bhi02g00576 Tan09g2327 Cmetu02g1365 . . . . Cla06g01714 . . Cco06g1956 . . Cre06g2615 . . . . . . . . . . . . . . . . . Cmo10g00081 . . . . . . . . . . . . . . Cla01g01398 Cam01g1460 Cec01g1499 . Clacu01g1484 Cmu01g1379 Cre01g1294 . Csa01g00089 Chy02g02631 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013452 1 1 1 0 1 1 1 1 1 1 1 1 2 0 1 1 1 1 0 1 1 1 1 1 0 0 1 2 1 0 26