Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1461 ATGTTTCAAAGAATCATTAATCGAAGAGTAAACAAGACGAAGACGAAGGTTGTTTCTCTCCATGTTTCCCCACCGAAACCTACCTTCTTCCTCTCATGTCGCAACTTCACTACCCAATCTAGCTCCGCCCTAGACACCGCCACCGCCGCCGCGGATATCGCCAATCTTGTCCTCGAATCTGACCCCAAAAGCTTGAGAGGATCCCTCCATGGATTACAAGTTCAATTTACCCCTGAACTTGTGGACAAGGTTCTCAAGCGCCTTTGGTTCCATGGACCGAAAGCGCTGCAATTCTTCAAACACCTTGAGTACCATCCATCTTATGCCCATTCCTCGTCTTCCTTTGACCATGTCATCGACATCGCAGGCCGTATGCGCGACTACAAGACCGTATGGGCTCTAGTGGCTCGAATGCGATCTCGCCGGATTGGACCCAGTTCAAAAACCTTCGCAATTATAGCCGAGAGGTTCGTCGGCGCTGGAAAACCAGACAGAGCAATCAAGGTTTTCTTGTCGATGCGGGAGCATGGCTGTCGTCAGGACCTGCATTCGTTTAACACCATTCTCGACATTCTCTGTAAGTCAAAACGTGTAGAAATGGCTTACAACAATCTGTTTAAGGTTTTGAGAGGAAAATTTAAGGCTGATGTTGTTAGTTATAACATAATTGCAAATGGGTGGTGCTTGATTAAGCGTACACCCAAAGCGTTGGAGGTTTTGAAGGAGATGGTGGAAAGAGGTTTAACTCCAACTATTACTACTTACAATATAGTTTTAAAAGGGTATTTTAGAGCTGGTCAGATTAAGGAAGCTTGGGAATTCTTTTTGCAAATGAAAGAAAGGGAAGTTGAAATTGACGTTGTTACTTATACTACTATGGTTCATGGGTTTGGTGTTGTTGGTGAAATTAAAAGGGCTCGAAAGGTTTTCGACGAGATGGTTGGCGAAGGGGTTCTTCCTTCAACAGCAACTTACAATGCTATGATTCAGGTTTTGTGTAAGAAAGACAGTGTGGAGAATGCAGTATTGTTGTTTGAGGAGATGATTAAAAAGGGTCATGTGCCAAATTTGACCACTTATAACGTGGTTATAAGAGGATTGTGTCATGCGGGTTATATGGAAAAGGCTATGGAGTTTATGGAGAGAATGAAAACTGATGGGTGTGAGCCAAATGTTCAGACATATAATGTCGCTATTCGGTATTTTTGTGATGCTGGTGACATTGAAAAGGGGTTGAATATGTTTGAGAAGATGGGGCAGGGGAGCTGTTTACCAAATTTGGATACGTATAATGTTTTGATTAGTGCAATGTTTGTGAGGAAAAAGTCTGAAGATTTAGTGGCTGCTGGAAAGCTGTTGCTTGAGATGATTGATAGAGGATTCCTCCCTCGAAAGTTCACTTTCAATCGAGTTCTCAATGGTCTTTTGCTGACGGGTAATCAAGTGCCTTCATCTGATCTTGTTGTGAAGCTGGTCACCTCAGAACCCGTTCCATTCTTCCTGAAGATGTCAAACAAGATTTTGAACTACACCTGTGGATCCGGAAGTGTTTTAATGGACAAGATAATGTGGCAACTATCAGAAGCAGAGCAGTCGATTGCCGAAGTCTTCACATCAAACATGGGGCATCTTAGTCTTTTCGCCATGATCTGCGGCGGCGGCGACGACGACGACGACGACTTCATGGCGGCTCTGCCATCCTCTTCCGCTGTACCGGATTCTTCTTCCTCCAGACACCATACCTACAGTAGGAAGCAGAAATCCCTTGGTCTTTTATGTTCAAACTTTTTGAGCTTGTATAACCACGATGGAGTCCATTCGATTGGGCTTGACGATGCAGCATCGCGATTAGGTGTGGAAAGGCGGCGGATCTATGATATTGTGAATGTTTTGGAGAGCGTCGGGGTTCTGTCGAGAAAGGCGAAGAATCAGTACAGCTGGAATGGGTTTGGAGCAATCCCTAAGGCCTTACAAGATCTTAAAGAAGAGGGCTTGAGGGAGAATTGCAGTGCATCCGATGGTAACGATTATGCGAAAGTATCGGATGATGAAGATGAGGATGAAAGATTTTCCAATCCAACCGGAAGCCAGACCTCAACTGCAGCGGTGCCAAAATCATCTTCATCATCATTAAAAGCCGACAATAGAAGGGAAAAGTCTTTGGCGCTCCTGACGCAAAATTTTGTTAAGCTATTTATCTGCAGTCATGTGAATATGATTTCCCTTGATGAAGCTGCTAAGCTTTTATTAGGAGATGGCCACAATTCATCAATAATGAGAACAAAAGTAAGGAGGCTATATGACATTGCAAATGTGCTGTCTTCTATGAATCTGATCGAAAAGACCCATACAACAGATACTAGAAAGCCTGCTTTTAGGTGGTTGGGAGTGAGGGGTAAAGTCAAGAATGAGCCTACCGTTCTTACAGAGTCCAGAAAAAGAGCATTTGGAACTGATGTAACTAATGTCAGTTATAAGAAGACTAAAGCTGAAAGTTCAGCGTATCAGGGTTTAAATCATTGCCTCAACATGCAAAAGCTAGTGCAGTGTGAGAATTCTTCGCAAGAGGATAGCCAAAATAGTCAGGATCAAGAATGCGAACGAACTTCCAAGAGCTATCAATTTGGACCGTTTGCTCCGGTAACAGTAGCTAAAGTTGGTGTCTCAGACAATAACAATACGAAGCGGACTCATGACTGGGAAAGCCTTTCCTCAACATTCCGTCCTCAGTATCACAATCAAGCCTTAAACGAACTTTTCTCCCATTACGTGGAAGCTTGGAAATCATGGTTTCTGGATGCAATTCTTGTGAAAGTAATTGAATGCAAAGAAAAATTCCAAATCAGCGATGTTGGCTTATCGATTCTGGATGGTCTTCTGGTACTTGTTCTTTATCCACGCCTTGCTGTTTGTTTCCTTCCACTTGTTTCATGCCATATAATTTCTGAAGTCCCACAGGATTCTTTTCCTTTTCATCCTGCTGAACTATCCTGGGAAAATAAATTTTGGAGAAATCAAGAGAAAATAGATGGCAGTGGTTAG 3042 43.16 MFQRIINRRVNKTKTKVVSLHVSPPKPTFFLSCRNFTTQSSSALDTATAAADIANLVLESDPKSLRGSLHGLQVQFTPELVDKVLKRLWFHGPKALQFFKHLEYHPSYAHSSSSFDHVIDIAGRMRDYKTVWALVARMRSRRIGPSSKTFAIIAERFVGAGKPDRAIKVFLSMREHGCRQDLHSFNTILDILCKSKRVEMAYNNLFKVLRGKFKADVVSYNIIANGWCLIKRTPKALEVLKEMVERGLTPTITTYNIVLKGYFRAGQIKEAWEFFLQMKEREVEIDVVTYTTMVHGFGVVGEIKRARKVFDEMVGEGVLPSTATYNAMIQVLCKKDSVENAVLLFEEMIKKGHVPNLTTYNVVIRGLCHAGYMEKAMEFMERMKTDGCEPNVQTYNVAIRYFCDAGDIEKGLNMFEKMGQGSCLPNLDTYNVLISAMFVRKKSEDLVAAGKLLLEMIDRGFLPRKFTFNRVLNGLLLTGNQVPSSDLVVKLVTSEPVPFFLKMSNKILNYTCGSGSVLMDKIMWQLSEAEQSIAEVFTSNMGHLSLFAMICGGGDDDDDDFMAALPSSSAVPDSSSSRHHTYSRKQKSLGLLCSNFLSLYNHDGVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLRENCSASDGNDYAKVSDDEDEDERFSNPTGSQTSTAAVPKSSSSSLKADNRREKSLALLTQNFVKLFICSHVNMISLDEAAKLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGVRGKVKNEPTVLTESRKRAFGTDVTNVSYKKTKAESSAYQGLNHCLNMQKLVQCENSSQEDSQNSQDQECERTSKSYQFGPFAPVTVAKVGVSDNNNTKRTHDWESLSSTFRPQYHNQALNELFSHYVEAWKSWFLDAILVKVIECKEKFQISDVGLSILDGLLVLVLYPRLAVCFLPLVSCHIISEVPQDSFPFHPAELSWENKFWRNQEKIDGSG 1013
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28185939 28197204 - CaPI482276_01g014610.1 Cam01g1461 118543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1461 1013 FunFam E2F transcription factor-like E2FE 711 798 - -
Cam01g1461 1013 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 390 IPR002885 -
Cam01g1461 1013 Gene3D - 579 652 IPR036388 -
Cam01g1461 1013 Gene3D - 711 798 IPR036388 -
Cam01g1461 1013 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 251 285 IPR002885 -
Cam01g1461 1013 Pfam E2F/DP family winged-helix DNA-binding domain 717 796 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cam01g1461 1013 Pfam E2F/DP family winged-helix DNA-binding domain 585 649 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cam01g1461 1013 SMART E2F_TDP_2 716 796 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cam01g1461 1013 SMART E2F_TDP_2 584 649 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cam01g1461 1013 Gene3D Tetratricopeptide repeat domain 206 300 IPR011990 GO:0005515(InterPro)
Cam01g1461 1013 Gene3D Tetratricopeptide repeat domain 90 205 IPR011990 GO:0005515(InterPro)
Cam01g1461 1013 Gene3D Tetratricopeptide repeat domain 314 382 IPR011990 GO:0005515(InterPro)
Cam01g1461 1013 Pfam PPR repeat 160 178 IPR002885 -
Cam01g1461 1013 Pfam PPR repeat 218 248 IPR002885 -
Cam01g1461 1013 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 355 IPR002885 -
Cam01g1461 1013 SUPERFAMILY Winged helix DNA-binding domain 583 647 IPR036390 -
Cam01g1461 1013 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 425 IPR002885 -
Cam01g1461 1013 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 146 180 IPR002885 -
Cam01g1461 1013 NCBIfam pentatricopeptide repeat 254 287 IPR002885 -
Cam01g1461 1013 NCBIfam pentatricopeptide repeat 359 392 IPR002885 -
Cam01g1461 1013 NCBIfam pentatricopeptide repeat 288 321 IPR002885 -
Cam01g1461 1013 NCBIfam pentatricopeptide repeat 394 426 IPR002885 -
Cam01g1461 1013 NCBIfam pentatricopeptide repeat 324 356 IPR002885 -
Cam01g1461 1013 NCBIfam pentatricopeptide repeat 218 251 IPR002885 -
Cam01g1461 1013 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 320 IPR002885 -
Cam01g1461 1013 SUPERFAMILY Winged helix DNA-binding domain 718 797 IPR036390 -
Cam01g1461 1013 Gene3D Tetratricopeptide repeat domain 383 494 IPR011990 GO:0005515(InterPro)
Cam01g1461 1013 MobiDBLite consensus disorder prediction 667 714 - -
Cam01g1461 1013 MobiDBLite consensus disorder prediction 692 710 - -
Cam01g1461 1013 FunFam E2F transcription factor 8 579 651 - -
Cam01g1461 1013 SUPERFAMILY HCP-like 162 353 - -
Cam01g1461 1013 PANTHER PPR_LONG DOMAIN-CONTAINING PROTEIN 79 437 - GO:0009507(PANTHER)|GO:0010019(PANTHER)|GO:0031930(PANTHER)
Cam01g1461 1013 Pfam PPR repeat family 320 369 IPR002885 -
Cam01g1461 1013 Pfam PPR repeat family 250 297 IPR002885 -
Cam01g1461 1013 Pfam PPR repeat family 394 437 IPR002885 -
Cam01g1461 1013 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 250 IPR002885 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1461 Cam-Chr1:28185939 Cam02g2314 Cam-Chr2:35674984 4.60E-09 dispersed
Cam02g1551 Cam-Chr2:28476102 Cam01g1461 Cam-Chr1:28185939 1.80E-07 transposed
Cam04g0228 Cam-Chr4:7862851 Cam01g1461 Cam-Chr1:28185939 4.70E-10 transposed
Cam01g1461 Cam-Chr1:28185939 Cam06g1815 Cam-Chr6:29218080 6.70E-101 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51267 PF02319 E2F_TDP 9.30E-20 CL0123 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1461 - - - 0.0