Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam01g1461 | ATGTTTCAAAGAATCATTAATCGAAGAGTAAACAAGACGAAGACGAAGGTTGTTTCTCTCCATGTTTCCCCACCGAAACCTACCTTCTTCCTCTCATGTCGCAACTTCACTACCCAATCTAGCTCCGCCCTAGACACCGCCACCGCCGCCGCGGATATCGCCAATCTTGTCCTCGAATCTGACCCCAAAAGCTTGAGAGGATCCCTCCATGGATTACAAGTTCAATTTACCCCTGAACTTGTGGACAAGGTTCTCAAGCGCCTTTGGTTCCATGGACCGAAAGCGCTGCAATTCTTCAAACACCTTGAGTACCATCCATCTTATGCCCATTCCTCGTCTTCCTTTGACCATGTCATCGACATCGCAGGCCGTATGCGCGACTACAAGACCGTATGGGCTCTAGTGGCTCGAATGCGATCTCGCCGGATTGGACCCAGTTCAAAAACCTTCGCAATTATAGCCGAGAGGTTCGTCGGCGCTGGAAAACCAGACAGAGCAATCAAGGTTTTCTTGTCGATGCGGGAGCATGGCTGTCGTCAGGACCTGCATTCGTTTAACACCATTCTCGACATTCTCTGTAAGTCAAAACGTGTAGAAATGGCTTACAACAATCTGTTTAAGGTTTTGAGAGGAAAATTTAAGGCTGATGTTGTTAGTTATAACATAATTGCAAATGGGTGGTGCTTGATTAAGCGTACACCCAAAGCGTTGGAGGTTTTGAAGGAGATGGTGGAAAGAGGTTTAACTCCAACTATTACTACTTACAATATAGTTTTAAAAGGGTATTTTAGAGCTGGTCAGATTAAGGAAGCTTGGGAATTCTTTTTGCAAATGAAAGAAAGGGAAGTTGAAATTGACGTTGTTACTTATACTACTATGGTTCATGGGTTTGGTGTTGTTGGTGAAATTAAAAGGGCTCGAAAGGTTTTCGACGAGATGGTTGGCGAAGGGGTTCTTCCTTCAACAGCAACTTACAATGCTATGATTCAGGTTTTGTGTAAGAAAGACAGTGTGGAGAATGCAGTATTGTTGTTTGAGGAGATGATTAAAAAGGGTCATGTGCCAAATTTGACCACTTATAACGTGGTTATAAGAGGATTGTGTCATGCGGGTTATATGGAAAAGGCTATGGAGTTTATGGAGAGAATGAAAACTGATGGGTGTGAGCCAAATGTTCAGACATATAATGTCGCTATTCGGTATTTTTGTGATGCTGGTGACATTGAAAAGGGGTTGAATATGTTTGAGAAGATGGGGCAGGGGAGCTGTTTACCAAATTTGGATACGTATAATGTTTTGATTAGTGCAATGTTTGTGAGGAAAAAGTCTGAAGATTTAGTGGCTGCTGGAAAGCTGTTGCTTGAGATGATTGATAGAGGATTCCTCCCTCGAAAGTTCACTTTCAATCGAGTTCTCAATGGTCTTTTGCTGACGGGTAATCAAGTGCCTTCATCTGATCTTGTTGTGAAGCTGGTCACCTCAGAACCCGTTCCATTCTTCCTGAAGATGTCAAACAAGATTTTGAACTACACCTGTGGATCCGGAAGTGTTTTAATGGACAAGATAATGTGGCAACTATCAGAAGCAGAGCAGTCGATTGCCGAAGTCTTCACATCAAACATGGGGCATCTTAGTCTTTTCGCCATGATCTGCGGCGGCGGCGACGACGACGACGACGACTTCATGGCGGCTCTGCCATCCTCTTCCGCTGTACCGGATTCTTCTTCCTCCAGACACCATACCTACAGTAGGAAGCAGAAATCCCTTGGTCTTTTATGTTCAAACTTTTTGAGCTTGTATAACCACGATGGAGTCCATTCGATTGGGCTTGACGATGCAGCATCGCGATTAGGTGTGGAAAGGCGGCGGATCTATGATATTGTGAATGTTTTGGAGAGCGTCGGGGTTCTGTCGAGAAAGGCGAAGAATCAGTACAGCTGGAATGGGTTTGGAGCAATCCCTAAGGCCTTACAAGATCTTAAAGAAGAGGGCTTGAGGGAGAATTGCAGTGCATCCGATGGTAACGATTATGCGAAAGTATCGGATGATGAAGATGAGGATGAAAGATTTTCCAATCCAACCGGAAGCCAGACCTCAACTGCAGCGGTGCCAAAATCATCTTCATCATCATTAAAAGCCGACAATAGAAGGGAAAAGTCTTTGGCGCTCCTGACGCAAAATTTTGTTAAGCTATTTATCTGCAGTCATGTGAATATGATTTCCCTTGATGAAGCTGCTAAGCTTTTATTAGGAGATGGCCACAATTCATCAATAATGAGAACAAAAGTAAGGAGGCTATATGACATTGCAAATGTGCTGTCTTCTATGAATCTGATCGAAAAGACCCATACAACAGATACTAGAAAGCCTGCTTTTAGGTGGTTGGGAGTGAGGGGTAAAGTCAAGAATGAGCCTACCGTTCTTACAGAGTCCAGAAAAAGAGCATTTGGAACTGATGTAACTAATGTCAGTTATAAGAAGACTAAAGCTGAAAGTTCAGCGTATCAGGGTTTAAATCATTGCCTCAACATGCAAAAGCTAGTGCAGTGTGAGAATTCTTCGCAAGAGGATAGCCAAAATAGTCAGGATCAAGAATGCGAACGAACTTCCAAGAGCTATCAATTTGGACCGTTTGCTCCGGTAACAGTAGCTAAAGTTGGTGTCTCAGACAATAACAATACGAAGCGGACTCATGACTGGGAAAGCCTTTCCTCAACATTCCGTCCTCAGTATCACAATCAAGCCTTAAACGAACTTTTCTCCCATTACGTGGAAGCTTGGAAATCATGGTTTCTGGATGCAATTCTTGTGAAAGTAATTGAATGCAAAGAAAAATTCCAAATCAGCGATGTTGGCTTATCGATTCTGGATGGTCTTCTGGTACTTGTTCTTTATCCACGCCTTGCTGTTTGTTTCCTTCCACTTGTTTCATGCCATATAATTTCTGAAGTCCCACAGGATTCTTTTCCTTTTCATCCTGCTGAACTATCCTGGGAAAATAAATTTTGGAGAAATCAAGAGAAAATAGATGGCAGTGGTTAG | 3042 | 43.16 | MFQRIINRRVNKTKTKVVSLHVSPPKPTFFLSCRNFTTQSSSALDTATAAADIANLVLESDPKSLRGSLHGLQVQFTPELVDKVLKRLWFHGPKALQFFKHLEYHPSYAHSSSSFDHVIDIAGRMRDYKTVWALVARMRSRRIGPSSKTFAIIAERFVGAGKPDRAIKVFLSMREHGCRQDLHSFNTILDILCKSKRVEMAYNNLFKVLRGKFKADVVSYNIIANGWCLIKRTPKALEVLKEMVERGLTPTITTYNIVLKGYFRAGQIKEAWEFFLQMKEREVEIDVVTYTTMVHGFGVVGEIKRARKVFDEMVGEGVLPSTATYNAMIQVLCKKDSVENAVLLFEEMIKKGHVPNLTTYNVVIRGLCHAGYMEKAMEFMERMKTDGCEPNVQTYNVAIRYFCDAGDIEKGLNMFEKMGQGSCLPNLDTYNVLISAMFVRKKSEDLVAAGKLLLEMIDRGFLPRKFTFNRVLNGLLLTGNQVPSSDLVVKLVTSEPVPFFLKMSNKILNYTCGSGSVLMDKIMWQLSEAEQSIAEVFTSNMGHLSLFAMICGGGDDDDDDFMAALPSSSAVPDSSSSRHHTYSRKQKSLGLLCSNFLSLYNHDGVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLRENCSASDGNDYAKVSDDEDEDERFSNPTGSQTSTAAVPKSSSSSLKADNRREKSLALLTQNFVKLFICSHVNMISLDEAAKLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGVRGKVKNEPTVLTESRKRAFGTDVTNVSYKKTKAESSAYQGLNHCLNMQKLVQCENSSQEDSQNSQDQECERTSKSYQFGPFAPVTVAKVGVSDNNNTKRTHDWESLSSTFRPQYHNQALNELFSHYVEAWKSWFLDAILVKVIECKEKFQISDVGLSILDGLLVLVLYPRLAVCFLPLVSCHIISEVPQDSFPFHPAELSWENKFWRNQEKIDGSG | 1013 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 28185939 | 28197204 | - | CaPI482276_01g014610.1 | Cam01g1461 | 118543 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam01g1461 | 1013 | FunFam | E2F transcription factor-like E2FE | 711 | 798 | - | - | |
Cam01g1461 | 1013 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 356 | 390 | IPR002885 | - | |
Cam01g1461 | 1013 | Gene3D | - | 579 | 652 | IPR036388 | - | |
Cam01g1461 | 1013 | Gene3D | - | 711 | 798 | IPR036388 | - | |
Cam01g1461 | 1013 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 251 | 285 | IPR002885 | - | |
Cam01g1461 | 1013 | Pfam | E2F/DP family winged-helix DNA-binding domain | 717 | 796 | IPR003316 | GO:0005667(InterPro)|GO:0006355(InterPro) | |
Cam01g1461 | 1013 | Pfam | E2F/DP family winged-helix DNA-binding domain | 585 | 649 | IPR003316 | GO:0005667(InterPro)|GO:0006355(InterPro) | |
Cam01g1461 | 1013 | SMART | E2F_TDP_2 | 716 | 796 | IPR003316 | GO:0005667(InterPro)|GO:0006355(InterPro) | |
Cam01g1461 | 1013 | SMART | E2F_TDP_2 | 584 | 649 | IPR003316 | GO:0005667(InterPro)|GO:0006355(InterPro) | |
Cam01g1461 | 1013 | Gene3D | Tetratricopeptide repeat domain | 206 | 300 | IPR011990 | GO:0005515(InterPro) | |
Cam01g1461 | 1013 | Gene3D | Tetratricopeptide repeat domain | 90 | 205 | IPR011990 | GO:0005515(InterPro) | |
Cam01g1461 | 1013 | Gene3D | Tetratricopeptide repeat domain | 314 | 382 | IPR011990 | GO:0005515(InterPro) | |
Cam01g1461 | 1013 | Pfam | PPR repeat | 160 | 178 | IPR002885 | - | |
Cam01g1461 | 1013 | Pfam | PPR repeat | 218 | 248 | IPR002885 | - | |
Cam01g1461 | 1013 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 321 | 355 | IPR002885 | - | |
Cam01g1461 | 1013 | SUPERFAMILY | Winged helix DNA-binding domain | 583 | 647 | IPR036390 | - | |
Cam01g1461 | 1013 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 391 | 425 | IPR002885 | - | |
Cam01g1461 | 1013 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 146 | 180 | IPR002885 | - | |
Cam01g1461 | 1013 | NCBIfam | pentatricopeptide repeat | 254 | 287 | IPR002885 | - | |
Cam01g1461 | 1013 | NCBIfam | pentatricopeptide repeat | 359 | 392 | IPR002885 | - | |
Cam01g1461 | 1013 | NCBIfam | pentatricopeptide repeat | 288 | 321 | IPR002885 | - | |
Cam01g1461 | 1013 | NCBIfam | pentatricopeptide repeat | 394 | 426 | IPR002885 | - | |
Cam01g1461 | 1013 | NCBIfam | pentatricopeptide repeat | 324 | 356 | IPR002885 | - | |
Cam01g1461 | 1013 | NCBIfam | pentatricopeptide repeat | 218 | 251 | IPR002885 | - | |
Cam01g1461 | 1013 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 286 | 320 | IPR002885 | - | |
Cam01g1461 | 1013 | SUPERFAMILY | Winged helix DNA-binding domain | 718 | 797 | IPR036390 | - | |
Cam01g1461 | 1013 | Gene3D | Tetratricopeptide repeat domain | 383 | 494 | IPR011990 | GO:0005515(InterPro) | |
Cam01g1461 | 1013 | MobiDBLite | consensus disorder prediction | 667 | 714 | - | - | |
Cam01g1461 | 1013 | MobiDBLite | consensus disorder prediction | 692 | 710 | - | - | |
Cam01g1461 | 1013 | FunFam | E2F transcription factor 8 | 579 | 651 | - | - | |
Cam01g1461 | 1013 | SUPERFAMILY | HCP-like | 162 | 353 | - | - | |
Cam01g1461 | 1013 | PANTHER | PPR_LONG DOMAIN-CONTAINING PROTEIN | 79 | 437 | - | GO:0009507(PANTHER)|GO:0010019(PANTHER)|GO:0031930(PANTHER) | |
Cam01g1461 | 1013 | Pfam | PPR repeat family | 320 | 369 | IPR002885 | - | |
Cam01g1461 | 1013 | Pfam | PPR repeat family | 250 | 297 | IPR002885 | - | |
Cam01g1461 | 1013 | Pfam | PPR repeat family | 394 | 437 | IPR002885 | - | |
Cam01g1461 | 1013 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 216 | 250 | IPR002885 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam01g1461 | Cam-Chr1:28185939 | Cam02g2314 | Cam-Chr2:35674984 | 4.60E-09 | dispersed | |
Cam02g1551 | Cam-Chr2:28476102 | Cam01g1461 | Cam-Chr1:28185939 | 1.80E-07 | transposed | |
Cam04g0228 | Cam-Chr4:7862851 | Cam01g1461 | Cam-Chr1:28185939 | 4.70E-10 | transposed | |
Cam01g1461 | Cam-Chr1:28185939 | Cam06g1815 | Cam-Chr6:29218080 | 6.70E-101 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51267 | PF02319 | E2F_TDP | 9.30E-20 | CL0123 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam01g1461 | - | - | - | 0.0 |