Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1483 ATGTCGTGGGTCCCACGACACAATATTCCTTTCTTACATGAATTCTTTCCAAATAACCGTCAGATTCGGAACTGGATTCTCTTTTCCGTTACTCATCCGACGGCCATTCTTTCTTCTTCCAAATTTCCGGCGAGAAAGAGAAAAACCGAACGAACGAAGAGGAAGAAGAAAGATAGAAGAACGATTTTCTTTCTTTGTTTCAGAGAAACAGACAGAGCTATGGGGAAGGATTACTATAACATACTGAAAGTAAGCCGAAGCGCTAGCGATGAAGATTTGAAGAGAGCTTACAAGAGATTAGCCTTATTTTGGCATCCAGACAAGAACCCTTCTAACAAACAAGAAGCCGAGGCTAAGTTCAAGCAAATTTCTGAGGCTTATGATGTTCTTAGCGATCCTCAAAAGCGTCAGATCTACGACCTTTACGGTGAAGAAACCCTCAAGTCCGGCAAGATTCCTCCGCCCACGCCTCAAGCCACCTCCTCTTCAGCCTATTCTCCGGTTTACCAGCATTTTCAACGCCAGCATCCCAATACTTCCACCTTCAAGTTTAAACCCAGGAACGCCGATGATATTTACGCGGAATTTTTCGGATCCGAGGGCGGTGGCGGGAGCAATAATGTCGATGGGGGAGGGAAAAGTAGAGGGGTTAGGGATGAGTTTTTTAGGTTTCAGAATGGGACGGAGAATGGGAGTCGTGTTCAGGGGAAGAAAGCGGCTGCAGTTGAGAATACGTTGCCCTGTACCTTGGAGGAGCTCTATAAAGGCGCCAAAAAGAAGATGAGAATTTCGAGGAATGTTTATGATGTCTCTGGCAAGTTCCGGACGGTTGAAGAGATATTGACAATAGATATAAAGCCGGGTTGGAAGAAGGGGACAAAGATAACTTTTCCTCAGAAGGGAAATCAGGAGCCTGGCATCATTCCAGCAGATCTTATATTTGTAGTGGATGAGAAACTGCATGCTATATACCGGAGGGACGGGAATGATCTAGTGGTGAACCATGAAATAACGCTGCTGGAATCACTCACAGGTAAAACTCTTGAACTTACTTCTCTGGATGGAAGGACTCTCATGATCCCTATAACAGATATTGTCAAACCTGGTGATGAGATGGTTCTGGCAAATGAAGGAATGCCAATCTCAAAGGAACCTGGGAAGAAGGGTAATTTGAGAATCAAATTTGATGTCAAATATCCATCAAGACTTACAACAGAACAGAAGTCTGAATTGATAAGAGTTCTTGGTGTAGTTTCATAG 1260 43.97 MSWVPRHNIPFLHEFFPNNRQIRNWILFSVTHPTAILSSSKFPARKRKTERTKRKKKDRRTIFFLCFRETDRAMGKDYYNILKVSRSASDEDLKRAYKRLALFWHPDKNPSNKQEAEAKFKQISEAYDVLSDPQKRQIYDLYGEETLKSGKIPPPTPQATSSSAYSPVYQHFQRQHPNTSTFKFKPRNADDIYAEFFGSEGGGGSNNVDGGGKSRGVRDEFFRFQNGTENGSRVQGKKAAAVENTLPCTLEELYKGAKKKMRISRNVYDVSGKFRTVEEILTIDIKPGWKKGTKITFPQKGNQEPGIIPADLIFVVDEKLHAIYRRDGNDLVVNHEITLLESLTGKTLELTSLDGRTLMIPITDIVKPGDEMVLANEGMPISKEPGKKGNLRIKFDVKYPSRLTTEQKSELIRVLGVVS 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28385699 28388467 + CaPI482276_01g014830.1 Cam01g1483 118565

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1483 419 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 74 416 IPR051339 GO:0005829(PANTHER)|GO:0051082(PANTHER)|GO:0051085(PANTHER)|GO:0051087(PANTHER)
Cam01g1483 419 FunFam Dnaj homolog subfamily b member 238 319 - -
Cam01g1483 419 SUPERFAMILY HSP40/DnaJ peptide-binding domain 324 410 IPR008971 GO:0006457(InterPro)|GO:0051082(InterPro)
Cam01g1483 419 Pfam DnaJ C terminal domain 243 400 IPR002939 -
Cam01g1483 419 ProSiteProfiles dnaJ domain profile. 77 143 IPR001623 -
Cam01g1483 419 SUPERFAMILY Chaperone J-domain 76 151 IPR036869 -
Cam01g1483 419 Gene3D DnaJ domain 74 209 IPR036869 -
Cam01g1483 419 SMART dnaj_3 76 135 IPR001623 -
Cam01g1483 419 FunFam DnaJ subfamily B member 13 76 207 - -
Cam01g1483 419 Pfam DnaJ domain 77 140 IPR001623 -
Cam01g1483 419 CDD DnaJ_C 242 403 - -
Cam01g1483 419 FunFam DnaJ subfamily B member 13 321 401 - -
Cam01g1483 419 SUPERFAMILY HSP40/DnaJ peptide-binding domain 243 321 IPR008971 GO:0006457(InterPro)|GO:0051082(InterPro)
Cam01g1483 419 ProSitePatterns Nt-dnaJ domain signature. 120 139 IPR018253 -
Cam01g1483 419 Gene3D - 321 401 - -
Cam01g1483 419 CDD DnaJ 77 132 IPR001623 -
Cam01g1483 419 Gene3D - 240 319 - -
Cam01g1483 419 PRINTS DnaJ domain signature 135 154 IPR001623 -
Cam01g1483 419 PRINTS DnaJ domain signature 79 97 IPR001623 -
Cam01g1483 419 PRINTS DnaJ domain signature 115 135 IPR001623 -
Cam01g1483 419 PRINTS DnaJ domain signature 97 112 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1483 K09510 - - csv:101215798 633.254
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1483 Cam-Chr1:28385699 Cam02g0252 Cam-Chr2:3394613 6.20E-109 dispersed
Cam04g0834 Cam-Chr4:22579407 Cam01g1483 Cam-Chr1:28385699 2.80E-15 transposed
Cam05g1012 Cam-Chr5:9130495 Cam01g1483 Cam-Chr1:28385699 2.80E-10 transposed
Cam09g1669 Cam-Chr9:28962005 Cam01g1483 Cam-Chr1:28385699 1.80E-08 transposed
Cam10g0262 Cam-Chr10:4487625 Cam01g1483 Cam-Chr1:28385699 3.20E-15 transposed
Cam01g1483 Cam-Chr1:28385699 Cam05g2670 Cam-Chr5:34140771 2.20E-114 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g489 Blo04g00756 Blo16g00200 . . . Bpe13g00271 Bma06g00188 . Cmo13g00951 Cmo18g00102 . . . . . Cpe20g00207 . . . . . . . . . . . . . . . Cone2ag0864 Cone16ag0143 . . . Csa01g00799 Chy12g01317 Cme12g01743 . . Bda11g01684 Bda14g00836 . Bpe15g00616 Bma03g00809 . Sed08g2567 . . . Cma18g00131 Car13g00762 Car18g00123 Cpe09g01061 . Bhi08g01425 Tan05g2072 Cmetu12g0983 Lac10g0382 Hepe07g2276 . . Cla01g01417 Cam01g1483 Cec01g1522 Cco01g1569 Clacu01g1507 Cmu01g1399 Cre01g1319 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006344 2 2 2 2 2 1 2 1 1 1 1 1 0 1 1 2 1 2 2 1 1 1 1 1 1 0 1 3 1 0 38