Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1484 ATGGGGGAAAAGCCAGAAGTGTTGGAGGCTGTTTTGAAGGAAGCTATGGATTTGGCTGCTGAGGAAAGGCTGAAGATTTTTGGGCACAATAAGCTCGAGGGAAAGAAGGAAGCTGCTGCAATTATGGCTATTGCACTTGCTAATGGAGGAGGAAAGCCCCTTGACTGGCAAGATTTTGTTGGTATCATTACCCTGCTTATCATAAACTCCACAATCAGTTTTATTGAGGAAAACAATGCAGGAAATGCTGCAGCTGCTCTCATGGCTCGTCTTGCTCCTAAAGCCAAGGTTCTTAGAGATGGAAGGTGGAGCGAGCAAGATGCTTCCATTTTAGTTCCTGGCGACGTAATCAGTGTTAAACTTGGGGACATTATTCCAGCCGATGCACGTCTTCTAGATGGGGATCCACTAAAAATTGACCAATTTGCGCTTACAAGCGAATCTCTCCCTGTAACGAAGGGTCCTGGTGATGGTGTGTGCTCTAGTTCTACTTGCAAGCAAGGAGAGATTGAAGCTGTGGTCATTGCTACTAGTGTCCACACCTTTTTTGGTAAAGCTGCTCATCTTGTTGACACCACCAATCAAGTGGGACACTTCCAAAAGGTCTTAACAGCCATAGGGAATTTCTGCATATGTTCCATTGTTGTGGGAATGGTAATAGAGATCATTGTAATGTACCCAATTCAGGACCATGAGTATCGCCCTGGAATTAATAACCTCCTTATGCTACTAATTGGAGGAATTCCTATAGCCATGCCTACAGTTCTATCTGTGACAATGGCTATTGGTTCTCATAGGTTATCTCAACAGAGAATGACAGCTATTGAGGAAATGGCAGGCATGGATGTGCTCTGCAGTGATAAGATAGGAACCCTGACTTTTAACAAGTTAACTGTTGACAAAAATCTTGTTGAGGTTTTCAGTAAAGGGATAGATGCAGACACTGTTGTTCTAATGGCTGCTAGAGCATCAAGAATTGAGAAGCAAGATGCTATTGATACTGCCATTGTTGGGATGCTAGCTGATCCAAAGGAGGCACGTGCTGGGATTCAGGAAGTACATTTCCTACCTTTCAATCCTACTGATAAGCGAACAACTTTGACTTATATTGACCATGAGGGCAAGATGCACAGAGTCAGTAAAGGCGCTCCAAAACAGATTCTAAATCTTGCATACAACAAGTCAGAGATAGAGAGAAAAGTTCATCCAGTGATTGATAAATTTGATGAACGAGGTTTGTGTTCACTTGCTGTAGCATACCAGGAAAAGGATGAGTCTATTGCTGCTTTACTTGTTGACGACCTTATAGAAAAGGCAGATGGTTTTGCGGGTGTATTCCCTGAGCACAAATACGAGATTGTAAAACACTTGCAAGCTATGAAACATATATGTGGGATGACTGGTGATGGAGTGAATGATGCTCTTGCACTTAAAAAAGCAGACATAGGTATAACTGTTGCAGATGCAACTGATGCTGCTCGAAGTGCTTCTAATATTGTTCTTACTGAACCTGGTCTCAGTGTTATCATCAGTTCTGTTTTGACTAGTAGAGCAATATTTCAGAGGATGAAGAATTACACGCTTGGTTTCATGTTGCTGGCTCTCATTTGGAAATTTGATTTTCCACCATTTATGGTTATTATCATTGCTATCCTTAATGATGGTACAATCATGACAATATCAAAGGATAGGGTTAAACCATCTCCTCTACCAGATAGTTGGAAGCTGGCTGAAATTTTTACCATTGGCATTGTACTCGCATCAGCTATATATCTTCAAGTGAGCACCATCAGTCAGGCCCTCATTTTTGTTACGCGATCTCGAAGTTGGTCCTATGTCGAGCGTCCTGGGGTGTTTCTTGTAGTGGCTTTTATTCTTGCTCAATTGGTTGCCACTCTGATTGCTATCTATGCTAATTGGAGTTTTGCTGCCATTGAAGGAATTGGTTGGGGTTGGGCTGGCGTAATTTGGCTTTATAACATCATCTTTTATATTCCTCTTGATCCCATAAAGTTTGCTATTCGATATGCTTTGAGTGGGAAGGCTTGGGATCTCATGCTTGAGCAAAGGTTTGCTTTCACGAGACAAAAGGATTTCGGTAAGGAACAACGTGAGTTGCAATGGGCTCACGCACAAAGAACGCTGCATGGTTTGCAACCGCCTGATACTAAGATGTTCACTGAGCGAACTCATTTCATAGAACTCAATCACATGGCTGAAGAAGCCAAAAGGAGAGCTGAAATTGCTAGATTGAGGGAACTCCATACACTGAAAGGTCATGTAGAGTTAGTAGTGAGATTGAAAGGTCTCGATATTGAAACGATTCAACAAGCATACACCGTGTGA 2346 42.24 MGEKPEVLEAVLKEAMDLAAEERLKIFGHNKLEGKKEAAAIMAIALANGGGKPLDWQDFVGIITLLIINSTISFIEENNAGNAAAALMARLAPKAKVLRDGRWSEQDASILVPGDVISVKLGDIIPADARLLDGDPLKIDQFALTSESLPVTKGPGDGVCSSSTCKQGEIEAVVIATSVHTFFGKAAHLVDTTNQVGHFQKVLTAIGNFCICSIVVGMVIEIIVMYPIQDHEYRPGINNLLMLLIGGIPIAMPTVLSVTMAIGSHRLSQQRMTAIEEMAGMDVLCSDKIGTLTFNKLTVDKNLVEVFSKGIDADTVVLMAARASRIEKQDAIDTAIVGMLADPKEARAGIQEVHFLPFNPTDKRTTLTYIDHEGKMHRVSKGAPKQILNLAYNKSEIERKVHPVIDKFDERGLCSLAVAYQEKDESIAALLVDDLIEKADGFAGVFPEHKYEIVKHLQAMKHICGMTGDGVNDALALKKADIGITVADATDAARSASNIVLTEPGLSVIISSVLTSRAIFQRMKNYTLGFMLLALIWKFDFPPFMVIIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTIGIVLASAIYLQVSTISQALIFVTRSRSWSYVERPGVFLVVAFILAQLVATLIAIYANWSFAAIEGIGWGWAGVIWLYNIIFYIPLDPIKFAIRYALSGKAWDLMLEQRFAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDTKMFTERTHFIELNHMAEEAKRRAEIARLRELHTLKGHVELVVRLKGLDIETIQQAYTV 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28402859 28410445 + CaPI482276_01g014840.1 Cam01g1484 118566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1484 781 FunFam Plasma membrane ATPase 361 515 - -
Cam01g1484 781 SUPERFAMILY HAD-like 278 521 IPR036412 -
Cam01g1484 781 FunFam Plasma membrane ATPase 297 431 - -
Cam01g1484 781 Gene3D - 467 587 - -
Cam01g1484 781 Gene3D - 588 677 - -
Cam01g1484 781 NCBIfam HAD-IC family P-type ATPase 62 304 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cam01g1484 781 NCBIfam HAD-IC family P-type ATPase 442 539 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cam01g1484 781 Gene3D - 55 281 - -
Cam01g1484 781 SUPERFAMILY Calcium ATPase, transduction domain A 93 190 IPR008250 -
Cam01g1484 781 SUPERFAMILY Calcium ATPase, transmembrane domain M 20 678 IPR023298 -
Cam01g1484 781 FunFam Plasma membrane ATPase 93 177 - -
Cam01g1484 781 Gene3D - 730 781 - -
Cam01g1484 781 Gene3D - 297 424 IPR023299 GO:0000166(InterPro)
Cam01g1484 781 PRINTS P-type cation-transporting ATPase superfamily signature 285 299 - -
Cam01g1484 781 PRINTS P-type cation-transporting ATPase superfamily signature 467 486 - -
Cam01g1484 781 PRINTS P-type cation-transporting ATPase superfamily signature 490 502 - -
Cam01g1484 781 PRINTS P-type cation-transporting ATPase superfamily signature 140 154 - -
Cam01g1484 781 Pfam E1-E2 ATPase 91 269 - -
Cam01g1484 781 PANTHER CALCIUM-TRANSPORTING ATPASE 22 425 - GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER)
Cam01g1484 781 Gene3D - 282 296 IPR023214 -
Cam01g1484 781 Gene3D - 93 177 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1484 Cam-Chr1:28402859 Cam11g1227 Cam-Chr11:24373159 0.00E+00 dispersed
Cam01g1484 Cam-Chr1:28402859 Cam06g1787 Cam-Chr6:29010408 0.00E+00 wgd
Cam01g1484 Cam-Chr1:28402859 Cam09g1889 Cam-Chr9:33557832 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1484 K01535 - csv:101214920 705.671