Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1487 ATGGGCATGTTTGTTTTGGTTGTTTCATTGCTTTTACTATCAACCCTTTTCAGCTCTCGCACTTTTGCTCTCACTCCAGATGGCTTAACGTTGTTGGAAATTAGAAGCGCGTTTAATGATAGCAAAAACCTCCTTGGTGATTGGGAAGCTTCTGATGAACTTCCCTGCAAATGGTCTGGTATATCTTGTCACCCTGAGGACCAACGAGTTAGCTCAATTAACTTGCCTTACATGCAACTTGGTGGGTTCATTTCTCCCAGCATTGGTAAACTCAGTAGATTACAAAGACTGGCACTTCACGAAAATGGCTTACGTGGAAATATTCCTAACGAAATCACTGAATGCACTCAGCTCAGAGCTCTGTATTTGAGGTCTAATTATCTCCAAGGTGGCATACCGTCGGATATTGGAAACCTTTCTGCTCTTACAATACTGGATTTGTCAAGCAATTCGTTGAAGGGTGCTATTCCGTCATCCATTGGTCGTCTCTCGCTTCTGCGTCATTTGAATTTGTCCACAAACTTTTTCTCTGGGGAAATACCTGATTTTGGAGTTCTGAGCACATTTGGAAGCAATTCGTTCATTGGTAATCTAGATCTCTGCGGTCATCAAGTTAACAAGGCTTGCCGAACCTCACTGGGATTCCCTGCAGTGTTGCCCCATGCTGAAAGTGATGAAGCTTCTGTTCCTGCAAAAAAATCTTCACACTACGTCAAAGGGGTATTAATTGGTGCAGTGTCCACTATGGGTGTTGCACTTGTAGTGCTTGTTCCATTCTTGTGGATACGGTGGCTATCAAAGAAGGAAAGAGCTGCCAAGAGATACACAGAAGTCAAAAAGCAAGTGGTTCATGAACCAAGCACAAAACTTATTACTTTTCACGGTGACCTACCGTACCCATCATGTGAGATCATAGAAAAGCTGGAGTCACTAGATGAAGAAGATGTTGTCGGTTCTGGAGGATTTGGCATTGTATACCGAATGGTCATGAATGATTGTGGAACATTTGCTGTGAAAAAGATTGATGGAAGCAGAAAAGGTTCAGATCAAGTGTTTGAGAGAGAGTTGGAGATTTTGGGTTGCATCAAACATATAAACTTGGTCAATTTGCGGGGATACTGTAGTCTTCCAACTTCAAAGCTTCTTATCTATGACTTTCTAGCAATGGGCAGCTTAGATGATTTTTTGCACGAACATGGACCAGAAAAACAGCCTTTGGATTGGAGAGCTCGTCTAAGGATAGCCTTCGGCTCTGCTAGGGGGATTGCATACTTGCATCATGATTGTTGTCCAAAGATCGTGCATCGTGATATTAAATCGAGTAACATTCTACTTGATGAAAATTTGGAGCCTCATGTATCAGACTTTGGACTGGCCAAGCTTTTGGTTGATGACGATGCTCATGTCACAACTGTTGTTGCTGGAACGTTTGGCTATTTGGCTCCAGAATACCTACAAAGTGGGAGGGCAACTGAAAAATCAGATGTTTATAGCTTTGGAGTTTTATTATTGGAGCTGGTGACTGGGAAGAGACCAACTGATCCATCATTTGTAAAGCGAGGCTTAAATGTTGTTGGTTGGATGCACACATTATTGGGAGAAAACAAAATGGATGAGATAGTTGACAAAAGATGCAAGGACGTTGATGCTGATACTGTAGAAGCAATTCTCGAAATAGCAGCCAAATGCACGGATGCCGACCCAGACAATCGGCCATCAATGAGTCAAGTTTTACAGTTTCTCGAGCAAGAAGTCATGTCACCTTGTCCTAGTGATTTCTATGAGTCTCAGTCTGATTATTCTTGA 1806 42.3 MGMFVLVVSLLLLSTLFSSRTFALTPDGLTLLEIRSAFNDSKNLLGDWEASDELPCKWSGISCHPEDQRVSSINLPYMQLGGFISPSIGKLSRLQRLALHENGLRGNIPNEITECTQLRALYLRSNYLQGGIPSDIGNLSALTILDLSSNSLKGAIPSSIGRLSLLRHLNLSTNFFSGEIPDFGVLSTFGSNSFIGNLDLCGHQVNKACRTSLGFPAVLPHAESDEASVPAKKSSHYVKGVLIGAVSTMGVALVVLVPFLWIRWLSKKERAAKRYTEVKKQVVHEPSTKLITFHGDLPYPSCEIIEKLESLDEEDVVGSGGFGIVYRMVMNDCGTFAVKKIDGSRKGSDQVFERELEILGCIKHINLVNLRGYCSLPTSKLLIYDFLAMGSLDDFLHEHGPEKQPLDWRARLRIAFGSARGIAYLHHDCCPKIVHRDIKSSNILLDENLEPHVSDFGLAKLLVDDDAHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLLELVTGKRPTDPSFVKRGLNVVGWMHTLLGENKMDEIVDKRCKDVDADTVEAILEIAAKCTDADPDNRPSMSQVLQFLEQEVMSPCPSDFYESQSDYS 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28427222 28431796 + CaPI482276_01g014870.1 Cam01g1487 118569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1487 601 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 387 592 - -
Cam01g1487 601 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 24 186 - -
Cam01g1487 601 SMART serkin_6 311 586 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g1487 601 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 72 583 IPR051564 GO:0016020(PANTHER)
Cam01g1487 601 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Cam01g1487 601 SUPERFAMILY L domain-like 26 206 - -
Cam01g1487 601 SUPERFAMILY Protein kinase-like (PK-like) 291 582 IPR011009 -
Cam01g1487 601 Pfam Protein kinase domain 314 579 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g1487 601 ProSiteProfiles Protein kinase domain profile. 311 586 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g1487 601 ProSitePatterns Serine/Threonine protein kinases active-site signature. 433 445 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam01g1487 601 Pfam Leucine Rich Repeat 166 182 IPR001611 GO:0005515(InterPro)
Cam01g1487 601 Pfam Leucine Rich Repeat 117 139 IPR001611 GO:0005515(InterPro)
Cam01g1487 601 Pfam Leucine Rich Repeat 142 163 IPR001611 GO:0005515(InterPro)
Cam01g1487 601 Gene3D Phosphorylase Kinase; domain 1 270 386 - -
Cam01g1487 601 ProSitePatterns Protein kinases ATP-binding region signature. 317 340 IPR017441 GO:0005524(InterPro)
Cam01g1487 601 Gene3D Ribonuclease Inhibitor 26 211 IPR032675 -
Cam01g1487 601 Gene3D Transferase(Phosphotransferase) domain 1 387 591 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1487 Cam-Chr1:28427222 Cam08g0748 Cam-Chr8:7364670 1.40E-74 dispersed
Cam11g0589 Cam-Chr11:7435909 Cam01g1487 Cam-Chr1:28427222 4.60E-51 dispersed
Cam11g1410 Cam-Chr11:26771885 Cam01g1487 Cam-Chr1:28427222 1.10E-46 dispersed
Cam05g1739 Cam-Chr5:26001283 Cam01g1487 Cam-Chr1:28427222 6.80E-67 transposed
Cam07g1427 Cam-Chr7:28839867 Cam01g1487 Cam-Chr1:28427222 2.20E-135 transposed
Cam11g1649 Cam-Chr11:29204279 Cam01g1487 Cam-Chr1:28427222 1.10E-136 transposed
Cam11g1739 Cam-Chr11:29983053 Cam01g1487 Cam-Chr1:28427222 4.20E-81 transposed
Cam01g1487 Cam-Chr1:28427222 Cam06g1783 Cam-Chr6:28985209 5.60E-212 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84878 PF00069 Pkinase 7.40E-47 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1487 - - - 0.0