Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam01g1493 | ATGAGAGAAACAGAAACCACCATTATTGCTGTGATTAAACTGCTAATGATATTTGGTTTTGTAATGAAATTTCAAACTCTAAAGGCTAATATTGCAGATTTTGATGAGGTGTGGCAGAAAAGAGCTGAAGAAGCCAAGAAGGCTTCCTTTAAGGCCTACAAATCCCATCCAGAAGAAGTCACTAGTAATTTCAACAACCAAGTTCAAAGATACTTTGATGCTACAAATAACACAAGGAGACATTTGAGGAAGTACAATGGTCCATGTTTAGCCACGAATCCGATTGATCGTTGTTGGAGATGCGATAAACATTGGGCTAAAAATCGGAAGAAGCTAGCCGATTGTGCACTTGGGTTCGGTCGTGGAACAACTGGAGGCAAAAATGGAAGGATTTATGTGGTCCGAGATTCGAGCGATAACGACATGTTGAATCCTAAACCAGGAACCCTACGCTATGGTGTGATACAAGATAGACCACTTTGGATCATATTTGCACATGACATGGTGATAAGGCTAAGTGAAGAGCTTATAATGACGGATAACAAGACATTAGATGGTCGTGGTGCCAATGTGCACATTGCTAATGGTGGTCAAATTACTCTACAATTTGTGAACAATATAATCATCCATAACCTTCACATTCATGATATCAAGGCTGGCAATGGTGGCCTTATAAGAGACTCGGTGAACCACTATGGATTGCGAACACCAAGCGATGGTGATGGAATCTCCATGTTTGGAGCCTCAAAGATTTGGATAGATCATGTTTCTATGTCTAATTGTCAAGATGGGCTTATCGATGCGGTCATGGCATCTACTGCCATTACCATTTCCAACTGTCACTTCACCCATCATAACGATGTGATGTTATTAGGTGCAAGTGATAGCTACTCGAATGATCAGATAATGCAGGTAACTCTTGCATTTAATCACTTTGGTAAAGGGTTGGTGCAAAGGATGCCGAGATGTCGATGGGGGTTCTTCCATGTGGTCAATAATGACTACACTCATTGGCTTATGTACGCTATCGGGGGCAGCCACAACCCCACCATTATCAGCCAGGGCAACCGTTTCATTGCCCCACCAAACCCAAATTCCAAAGAGGTAACAAAAAGGGCGTATGCGTCAGAAAGCGAATGGAAATCTTGGAACTGGAGGTCAGAGGGAGATCTTATGATGAATGGAGCTTTTTTTATCCAATCTGGGAACCCCATCAAAAGATACTCCAAGAAAGACGTTATACATTCGAAACCCGGCACCTTCGTCACCAGGCTAACACGATTCGCTGGCCCTTTGAAATGCAGAAAAAACCAACCTTGTTAG | 1323 | 42.4 | MRETETTIIAVIKLLMIFGFVMKFQTLKANIADFDEVWQKRAEEAKKASFKAYKSHPEEVTSNFNNQVQRYFDATNNTRRHLRKYNGPCLATNPIDRCWRCDKHWAKNRKKLADCALGFGRGTTGGKNGRIYVVRDSSDNDMLNPKPGTLRYGVIQDRPLWIIFAHDMVIRLSEELIMTDNKTLDGRGANVHIANGGQITLQFVNNIIIHNLHIHDIKAGNGGLIRDSVNHYGLRTPSDGDGISMFGASKIWIDHVSMSNCQDGLIDAVMASTAITISNCHFTHHNDVMLLGASDSYSNDQIMQVTLAFNHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSHNPTIISQGNRFIAPPNPNSKEVTKRAYASESEWKSWNWRSEGDLMMNGAFFIQSGNPIKRYSKKDVIHSKPGTFVTRLTRFAGPLKCRKNQPC | 440 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 28470109 | 28471758 | + | CaPI482276_01g014930.1 | Cam01g1493 | 118575 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam01g1493 | 440 | Pfam | Pectate lyase | 178 | 358 | IPR002022 | - | |
Cam01g1493 | 440 | PANTHER | PECTATE LYASE 18-RELATED | 18 | 437 | IPR045032 | GO:0030570(InterPro) | |
Cam01g1493 | 440 | SMART | amb_all | 167 | 364 | IPR002022 | - | |
Cam01g1493 | 440 | FunFam | Pectate lyase | 92 | 433 | - | - | |
Cam01g1493 | 440 | Pfam | Pectate lyase, N terminus | 30 | 82 | IPR007524 | GO:0030570(InterPro) | |
Cam01g1493 | 440 | Gene3D | - | 92 | 433 | IPR012334 | - | |
Cam01g1493 | 440 | SUPERFAMILY | Pectin lyase-like | 82 | 435 | IPR011050 | - | |
Cam01g1493 | 440 | PRINTS | Pollen allergen Amb family signature | 319 | 338 | IPR018082 | - | |
Cam01g1493 | 440 | PRINTS | Pollen allergen Amb family signature | 341 | 360 | IPR018082 | - | |
Cam01g1493 | 440 | PRINTS | Pollen allergen Amb family signature | 115 | 132 | IPR018082 | - | |
Cam01g1493 | 440 | PRINTS | Pollen allergen Amb family signature | 175 | 191 | IPR018082 | - | |
Cam01g1493 | 440 | PRINTS | Pollen allergen Amb family signature | 239 | 260 | IPR018082 | - | |
Cam01g1493 | 440 | PRINTS | Pollen allergen Amb family signature | 383 | 407 | IPR018082 | - | |
Cam01g1493 | 440 | PRINTS | Pollen allergen Amb family signature | 139 | 164 | IPR018082 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam01g1493 | Cam-Chr1:28470109 | Cam08g1349 | Cam-Chr8:19764636 | 2.50E-177 | dispersed | |
Cam01g1493 | Cam-Chr1:28470109 | Cam10g1195 | Cam-Chr10:25357712 | 7.00E-180 | wgd | |
Cam01g1493 | Cam-Chr1:28470109 | Cam05g2653 | Cam-Chr5:34010859 | 8.60E-178 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam01g1493 | K01728 | - | csv:101218812 | 817.379 |