Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1493 ATGAGAGAAACAGAAACCACCATTATTGCTGTGATTAAACTGCTAATGATATTTGGTTTTGTAATGAAATTTCAAACTCTAAAGGCTAATATTGCAGATTTTGATGAGGTGTGGCAGAAAAGAGCTGAAGAAGCCAAGAAGGCTTCCTTTAAGGCCTACAAATCCCATCCAGAAGAAGTCACTAGTAATTTCAACAACCAAGTTCAAAGATACTTTGATGCTACAAATAACACAAGGAGACATTTGAGGAAGTACAATGGTCCATGTTTAGCCACGAATCCGATTGATCGTTGTTGGAGATGCGATAAACATTGGGCTAAAAATCGGAAGAAGCTAGCCGATTGTGCACTTGGGTTCGGTCGTGGAACAACTGGAGGCAAAAATGGAAGGATTTATGTGGTCCGAGATTCGAGCGATAACGACATGTTGAATCCTAAACCAGGAACCCTACGCTATGGTGTGATACAAGATAGACCACTTTGGATCATATTTGCACATGACATGGTGATAAGGCTAAGTGAAGAGCTTATAATGACGGATAACAAGACATTAGATGGTCGTGGTGCCAATGTGCACATTGCTAATGGTGGTCAAATTACTCTACAATTTGTGAACAATATAATCATCCATAACCTTCACATTCATGATATCAAGGCTGGCAATGGTGGCCTTATAAGAGACTCGGTGAACCACTATGGATTGCGAACACCAAGCGATGGTGATGGAATCTCCATGTTTGGAGCCTCAAAGATTTGGATAGATCATGTTTCTATGTCTAATTGTCAAGATGGGCTTATCGATGCGGTCATGGCATCTACTGCCATTACCATTTCCAACTGTCACTTCACCCATCATAACGATGTGATGTTATTAGGTGCAAGTGATAGCTACTCGAATGATCAGATAATGCAGGTAACTCTTGCATTTAATCACTTTGGTAAAGGGTTGGTGCAAAGGATGCCGAGATGTCGATGGGGGTTCTTCCATGTGGTCAATAATGACTACACTCATTGGCTTATGTACGCTATCGGGGGCAGCCACAACCCCACCATTATCAGCCAGGGCAACCGTTTCATTGCCCCACCAAACCCAAATTCCAAAGAGGTAACAAAAAGGGCGTATGCGTCAGAAAGCGAATGGAAATCTTGGAACTGGAGGTCAGAGGGAGATCTTATGATGAATGGAGCTTTTTTTATCCAATCTGGGAACCCCATCAAAAGATACTCCAAGAAAGACGTTATACATTCGAAACCCGGCACCTTCGTCACCAGGCTAACACGATTCGCTGGCCCTTTGAAATGCAGAAAAAACCAACCTTGTTAG 1323 42.4 MRETETTIIAVIKLLMIFGFVMKFQTLKANIADFDEVWQKRAEEAKKASFKAYKSHPEEVTSNFNNQVQRYFDATNNTRRHLRKYNGPCLATNPIDRCWRCDKHWAKNRKKLADCALGFGRGTTGGKNGRIYVVRDSSDNDMLNPKPGTLRYGVIQDRPLWIIFAHDMVIRLSEELIMTDNKTLDGRGANVHIANGGQITLQFVNNIIIHNLHIHDIKAGNGGLIRDSVNHYGLRTPSDGDGISMFGASKIWIDHVSMSNCQDGLIDAVMASTAITISNCHFTHHNDVMLLGASDSYSNDQIMQVTLAFNHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSHNPTIISQGNRFIAPPNPNSKEVTKRAYASESEWKSWNWRSEGDLMMNGAFFIQSGNPIKRYSKKDVIHSKPGTFVTRLTRFAGPLKCRKNQPC 440
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 28470109 28471758 + CaPI482276_01g014930.1 Cam01g1493 118575
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1493 440 Pfam Pectate lyase 178 358 IPR002022 -
Cam01g1493 440 PANTHER PECTATE LYASE 18-RELATED 18 437 IPR045032 GO:0030570(InterPro)
Cam01g1493 440 SMART amb_all 167 364 IPR002022 -
Cam01g1493 440 FunFam Pectate lyase 92 433 - -
Cam01g1493 440 Pfam Pectate lyase, N terminus 30 82 IPR007524 GO:0030570(InterPro)
Cam01g1493 440 Gene3D - 92 433 IPR012334 -
Cam01g1493 440 SUPERFAMILY Pectin lyase-like 82 435 IPR011050 -
Cam01g1493 440 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Cam01g1493 440 PRINTS Pollen allergen Amb family signature 341 360 IPR018082 -
Cam01g1493 440 PRINTS Pollen allergen Amb family signature 115 132 IPR018082 -
Cam01g1493 440 PRINTS Pollen allergen Amb family signature 175 191 IPR018082 -
Cam01g1493 440 PRINTS Pollen allergen Amb family signature 239 260 IPR018082 -
Cam01g1493 440 PRINTS Pollen allergen Amb family signature 383 407 IPR018082 -
Cam01g1493 440 PRINTS Pollen allergen Amb family signature 139 164 IPR018082 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1493 Cam-Chr1:28470109 Cam08g1349 Cam-Chr8:19764636 2.50E-177 dispersed
Cam01g1493 Cam-Chr1:28470109 Cam10g1195 Cam-Chr10:25357712 7.00E-180 wgd
Cam01g1493 Cam-Chr1:28470109 Cam05g2653 Cam-Chr5:34010859 8.60E-178 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1493 K01728 - csv:101218812 817.379