Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1495 ATGGCGCCGGTTTTATCTCGGTTACTTCTCCGACGGAATGTTCACGCACCATTTCTTCGCACCTCCACCACCGCCTTCAACTTTTGCAGAACAATTCATTCTATAGTTTTCTCTACGGTAGAAGTGGATCAACTATCAGGTTCTAAGCCAGGAGATGTTCACAACTTGGTGCAGGGTAAATGGATTGGATCTTCCGGTTGGAATACTATTGTAGATCCTTTAAATGGAGAACCGTTTATTAGAGTTGCCGAAGTCAATGAAACAGAGATTCAGCCATTTGTGAAGAGTCTGACCAAATGCCCTAAGCATGGCTTACATAATCCTTTCAAATCGCCTGAGAGATATCTGTTGTTTGGAGATGTATCTTCCAAGGCTGCTGACATGCTTTCCAAGCCAGAGGTGACTGACTTCTTCGCAAGGTTAATTCAAAGAGTTTCTCCAAAAAGTTATCAGCAAGCTTGTGCTGAAGTGAATGTCACTGTTAAATTTCTACGGAACTTCTCTGGCGACCAGGTTCGCTTCTTAGCAAGGTCCTTTGCAGTACCTGGAGATCATCTTGGACAACAAAGTCATGGTTTCCGTTGGCCATATGGTCCCGTTGCAATTATCACTCCTTTCAATTTCCCATTAGAAATTCCTGTACTTCAGGTGATGGGTGCACTTTACATGGGCAACAAACCTGTTTTAAAAGTTGATAGCAAGGTTAGCATAGTTATGGAGCAAATGATTCGATTGCTTCACCATTGTGGGCTACCTTTGGAAGATCTAGATTTTATAAATTGTGATGGGAAGACAATGAACAAGTTATTGATTGAGGCAAATCCATCCATGACTCTTTTTACCGGCAGCTCAAGGGTGGCAGATAAGTTGGCTGTAGACTTGAAGGGCCGCATTAAATTGGAAGATGCAGGTTTCGATTGGAAAATCTTAGGACCTGATGTTCGAGAGGAAGACTATGTTGCATGGGTTTGTGACCAAGATGCATATGCTTGTAGTGGCCAGAAGTGCTCCGCACAATCGATACTGTTCATGCATGAGAACTGGTCAACGACTTCACTTATTTCAAAGATAAAGAATCTTGCAGAGAGAAGAAATTTGACCGATTTAACAATTGGCCCAGTTCTTACATTCACAAATGAAATGATACTAGATCATATGAATAAATTGCTCAAAATACCAGGGGCAAAGTTACTCTTTGGTGGTGAACCTCTAAAAAACCATTCCATTCCACCCATATATGGTGCTATAAAACCCACTGCATTATATATTCCACTCGAAGAAATGATGAAAGATGAGAATTATGAGCTCGTGACTAAAGAAATTTTTGGACCATTCCAGATTATTACGGAATACAAGAGAGATCAACTTCCAGTTGTGTTGGATGCTCTTGAGCGGATGCATGCTCATCTAACCGCCGCTGTTGTTTCAAACGACCCTCTTTTTTTGCAGGAAGTTATTGGCAATACGGTGAACGGAACGACATATGTAGGTTTACGAGCGAGGACAACAGGAGCTCCGCAAAACCATTGGTTTGGACCTGCCGGAGACCCTAGGGGTGCAGGTATCGGAACCCCGGAAGCCATCAAACTCGTATGGTCTTGCCATAGAGAGATCATATATGATATTGGCCCGTTGCCCTTGAATTGGACAGTTCCACCATCGACTTGA 1668 42.69 MAPVLSRLLLRRNVHAPFLRTSTTAFNFCRTIHSIVFSTVEVDQLSGSKPGDVHNLVQGKWIGSSGWNTIVDPLNGEPFIRVAEVNETEIQPFVKSLTKCPKHGLHNPFKSPERYLLFGDVSSKAADMLSKPEVTDFFARLIQRVSPKSYQQACAEVNVTVKFLRNFSGDQVRFLARSFAVPGDHLGQQSHGFRWPYGPVAIITPFNFPLEIPVLQVMGALYMGNKPVLKVDSKVSIVMEQMIRLLHHCGLPLEDLDFINCDGKTMNKLLIEANPSMTLFTGSSRVADKLAVDLKGRIKLEDAGFDWKILGPDVREEDYVAWVCDQDAYACSGQKCSAQSILFMHENWSTTSLISKIKNLAERRNLTDLTIGPVLTFTNEMILDHMNKLLKIPGAKLLFGGEPLKNHSIPPIYGAIKPTALYIPLEEMMKDENYELVTKEIFGPFQIITEYKRDQLPVVLDALERMHAHLTAAVVSNDPLFLQEVIGNTVNGTTYVGLRARTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHREIIYDIGPLPLNWTVPPST 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28482854 28487911 - CaPI482276_01g014950.1 Cam01g1495 118577

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1495 555 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 47 304 IPR016162 GO:0016491(InterPro)
Cam01g1495 555 PANTHER ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE 54 549 IPR044638 GO:0003842(PANTHER)|GO:0004029(InterPro)|GO:0005739(PANTHER)|GO:0010133(PANTHER)
Cam01g1495 555 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 329 340 IPR016160 GO:0016491(InterPro)
Cam01g1495 555 FunFam Aldehyde dehydrogenase 12 312 500 - -
Cam01g1495 555 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 306 497 IPR016163 GO:0016620(InterPro)
Cam01g1495 555 SUPERFAMILY ALDH-like 53 523 IPR016161 GO:0016491(InterPro)
Cam01g1495 555 Pfam Aldehyde dehydrogenase family 70 499 IPR015590 GO:0016491(InterPro)
Cam01g1495 555 FunFam probable aldehyde dehydrogenase 46 304 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1495 K00294 - - csv:101214440 1092.41
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g517 . Blo16g00194 . . . Bpe13g00279 . . Cmo13g00961 . . . . . . Cpe20g00200 . . . . . . . . . . . . . . . . Cone16ag0152 . . . Csa01g00788 Chy12g01328 Cme12g01755 . . Bda11g01689 . . . . . Sed08g2576 . . Cma13g00931 . Car13g00771 . . . Bhi08g01409 Tan05g2088 Cmetu12g1329 Lac10g0368 . . . Cla01g01428 Cam01g1495 Cec01g1535 Cco01g1581 Clacu01g1519 Cmu01g1411 Cre01g1329 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam06g1135 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G24503 69.4 3.9e-211 731.1
Cam02g1724 . 51 535 Aldehyde Dehydrogenase Gene Family AT3G24503 54.7 3.9e-158 555.1
Cam06g1838 . 69 553 Aldehyde Dehydrogenase Gene Family AT3G24503 54.3 3.4e-154 542.0
Cam06g1838 . 1 553 Aldehyde Dehydrogenase Gene Family AT3G48000 75.8 2.7e-250 861.3
Cam02g1724 . 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 75.3 6.2e-247 850.1
Cam06g1135 . 18 502 Aldehyde Dehydrogenase Gene Family AT3G48000 54.6 8.9e-161 563.9
Cam02g1724 . 1 385 Aldehyde Dehydrogenase Gene Family AT1G23800 76.9 3.6e-170 594.7
Cam06g1838 . 48 397 Aldehyde Dehydrogenase Gene Family AT1G23800 78.0 2.7e-165 578.6
Cam06g1135 . 18 346 Aldehyde Dehydrogenase Gene Family AT1G23800 54.7 1.1e-102 370.5
Cam11g1604 . 7 482 Aldehyde Dehydrogenase Gene Family AT4G34240 63.9 1.6e-181 632.9
Cam11g1605 . 7 574 Aldehyde Dehydrogenase Gene Family AT4G34240 53.2 2.7e-165 578.9
Cam11g1604 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 72.0 6.3e-178 620.5
Cam11g1605 . 157 572 Aldehyde Dehydrogenase Gene Family AT1G44170 71.4 7.0e-177 617.1
Cam02g2404 . 67 478 Aldehyde Dehydrogenase Gene Family AT1G44170 50.5 1.6e-117 419.9
Cam07g0921 . 84 498 Aldehyde Dehydrogenase Gene Family AT1G44170 50.1 6.9e-116 414.5
Cam07g0921 . 27 499 Aldehyde Dehydrogenase Gene Family AT4G36250 63.6 2.3e-184 642.1
Cam02g2404 . 2 480 Aldehyde Dehydrogenase Gene Family AT4G36250 56.2 3.4e-159 558.5
Cam02g1941 . 37 609 Aldehyde Dehydrogenase Gene Family AT1G79440 65.7 1.4e-214 742.7
Cam09g1553 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 82.7 1.3e-240 829.3
Cam01g1872 . 197 631 Aldehyde Dehydrogenase Gene Family AT2G14170 67.8 1.1e-180 630.2
Cam06g1817 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 81.6 6.6e-251 863.2
Cam06g1817 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 81.9 2.2e-254 874.8
Cam02g1764 . 1 502 Aldehyde Dehydrogenase Gene Family AT2G24270 89.8 7.1e-269 922.9
Cam01g1495 . 21 555 Aldehyde Dehydrogenase Gene Family AT5G62530 78.2 2.1e-261 898.3
Cam06g0457 . 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 76.7 1.4e-276 948.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011636 1 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 30