Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1498 ATGGCGAATACACCAATTGAAGCCGCAACCTTCTGGACCCAAGCAAATGCTCTCCTAAGGAAAAACTTAACCTACCAGAAACGAAATTTGAGGACAAATATTCGTCTGATTTCCTTCCCGTTCATCCTCTGTTTGTTGCTCGTTCTACTTCAAAAAATAGTCAACAACGAATTGGATAAGCCGAAGAACAATTGTGGTTGTGTTTGTGTTGATACGAATGGAGATGGTGTATGTGAGAAAGTTTGTGGGTTAGAGTACTCAACTTTGATACAAGCTGTGAGCTGCCCCATTCCAAGTCCTCCACAATGGCCTCCAATATTGCAAATGCCTGCTCCTCATTTTCGTGCTGTGCGAACAGATTTTTTTCCATATGAAGACTTGCCAAATGAATCATGCAGGGAATCAATGTCATGCCCTGTTACTATGCTTTTCACTGGAAATAATCGCTCTCTTGGAAATATTTTGGCTGCAAGTATGGTCCCAAGTTCTTTGTCTTGGAACTCTTCTGATGTTCTATATGGTGCATCGCTTAACGTTTTGGGATCAGCATCGAGGCCTAGAACAAACAATTATCTTGATCCTGCTTTCTTTTCAAACCTTCCTTTATATTATATGCAGCGTCAGTGTGTGACAGGCTCGACATTGTCAATTCCTGTTTCAATATTCTCTCTTACAAAGACACAAGATATTGCATGTGTTCAAGGTCTACAATTGTGGCGCAATAGTTCTTCAGAGGTGAATGATGAGATATACAGAGGTTACAAAAACGGGAATTCAGAGGGGAAAATCAATGAGATTCTTTCAGGTTTCAATTTCTTAAATTCTGATGGGAACAATTTTAATGTGACTATATGGTATAATTCATCATATAAGAGTGACATTGGCCGTTCTTCGAATGTTCTGTTGCGGGTTCCACGCTTGGTTAATCTGGCATCCAATGGCTATCTTAAGTTTTTGCTAGGAGCAAGCACAGAGATGCTCTTTGAGTTTGTCAAAGAAATGCCGAAACCAGCAACAAAGATCAGGCTGGATTTCTCTTCTCTACTTGGTGCACTCTTTTTTACGTGGGTCATCCTCCAGCTTTTTCCAGTTATCTTGACATCTTTGGTATATGAGAAGCAACAGAAACTGAGAATCATGATGAAAATGCATGGGCTTGGTGATGGGCCTTATTGGATGATTTCGTATGCTTATTTTTTCACAATTTCTGCAGTATACATGTTTTGTTTTGTGTTGTTTGGTTCAGTTATAGGGCTAAAGTTTTTTACAATGAATGACTACAGTATCCAGTTTGTGTTCTATCTCTTATTTATAAATTTGCAAGTCTCCCTGGCCTTTCTAGTGGCTGCCATGTTTTCAAATGTCAAGACTGCTGAAGTTTCAACATATATATGTGTCTTCGGAACAGGGCTCTTAGGTGGATTTCTCTTCCAGTTTTTTATTGAAGATCCATCATTCCCACGTGGCTGGATCATGGTTATGGAGTTATATCCTGGATTTTTGCTGTATCGTGGGTTGTATGAGTTTGCATTTTATTCTTTCACTGGGAATCTAATGGGGACTTATGGGATGCGCTGGGGAGATTTGACCGATAGTACTAATGGAATGAGAGAAGTCTTGATCATTATGCTTGTTGAGTGGATAGTGGTGCTTCTAGTTGCATATTGTATCGATAAAGTTTTATCATCGGGAAGTTGGAAGTGTGCATTATTTTTCCTCCAAAGACATGACAAAAAACCTCCATCTCAGAATCCTGGTTTGGAAAGGCAAGGTTCAAAAGTTTTGGTTCAAACTGATAAACCTGATGTCAGACAAGAGAGGGAGAAGGTCGAAAAGTTGCTAAAGGAAGGAGATCCAAGTTATGCCATCGTTTCTGACCATCTCAAAAAGGTGTATCCAGGAAAGGATGGAAACCCTGAGCAGTTTGCAGTTAGAGGACTATCTCTTGCTCTGGCTCGAGGAGAATGCTTTGGGCTGCTAGGTCCAAATGGTGCGGGAAAGACCTCCTTTATCAATATGATGATTGGTCTTATAAAACCAACCGCTGGAACAGCCTTGGTTGAAGGTCTGGACATAAGCACTGAGATGAATGGCATATACGCAAGCATGGGTGTTTGTCCACAGCATGACCTGCTATGGGAAACCTTAACAGGAAGGGAGCACCTACTCTTTTATGGCAGACTGAAGAATTTAAAAGGTTCTGCTTTAATACAAGCAGTGGAAGAATCTCTCAAGGGTGTCAACCTCTTCCATGGAGGAGTAGCAGAAAAACAAGCTGGGAAGTACAGTGGAGGTATGAAGAGGAGGCTTAGTGTTGCTATTTCACTAATTGGGGATCCTAAAGTTGTCTATATGGATGAGCCAAGCACCGGCCTAGATCCAGCTTCAAGAAAAAATTTATGGAATGTTGTTAAGCGTGCAAAGCAAGATCGAGCAATCATCCTTACTACACATTCTATGGAAGAGGCGGAAGTCTTATGCGATCGGATAGGAATTTTTGTAGATGGAAGCCTGCAGTGTATTGGAAATCCAAAAGAGCTTAAAGCCAGATATGGCGGGGCTTATGTATTTACAATGACAACATCCCCTGCTCATGAAGGACATGTTGAGAACATGGTGAAGCATTTGGCCTCTGGAGCTAGCAAGATATACCACTTATCTGGAACTCAAAAATTTGAGCTTCCAAAACACCAAGTTCGGATTGCTGATGTGTTTCAAGCAGTTGAAAATGCGAAAAGCAGGTTTACAGTGTTGGCTTGGGGTTTGGCTGACACAACTTTGGAGGACGTCTTTATCAAAGTTGCTAATGGCGCCGAGTCTTCAGATATTCTTTCTTGA 2838 41.12 MANTPIEAATFWTQANALLRKNLTYQKRNLRTNIRLISFPFILCLLLVLLQKIVNNELDKPKNNCGCVCVDTNGDGVCEKVCGLEYSTLIQAVSCPIPSPPQWPPILQMPAPHFRAVRTDFFPYEDLPNESCRESMSCPVTMLFTGNNRSLGNILAASMVPSSLSWNSSDVLYGASLNVLGSASRPRTNNYLDPAFFSNLPLYYMQRQCVTGSTLSIPVSIFSLTKTQDIACVQGLQLWRNSSSEVNDEIYRGYKNGNSEGKINEILSGFNFLNSDGNNFNVTIWYNSSYKSDIGRSSNVLLRVPRLVNLASNGYLKFLLGASTEMLFEFVKEMPKPATKIRLDFSSLLGALFFTWVILQLFPVILTSLVYEKQQKLRIMMKMHGLGDGPYWMISYAYFFTISAVYMFCFVLFGSVIGLKFFTMNDYSIQFVFYLLFINLQVSLAFLVAAMFSNVKTAEVSTYICVFGTGLLGGFLFQFFIEDPSFPRGWIMVMELYPGFLLYRGLYEFAFYSFTGNLMGTYGMRWGDLTDSTNGMREVLIIMLVEWIVVLLVAYCIDKVLSSGSWKCALFFLQRHDKKPPSQNPGLERQGSKVLVQTDKPDVRQEREKVEKLLKEGDPSYAIVSDHLKKVYPGKDGNPEQFAVRGLSLALARGECFGLLGPNGAGKTSFINMMIGLIKPTAGTALVEGLDISTEMNGIYASMGVCPQHDLLWETLTGREHLLFYGRLKNLKGSALIQAVEESLKGVNLFHGGVAEKQAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASRKNLWNVVKRAKQDRAIILTTHSMEEAEVLCDRIGIFVDGSLQCIGNPKELKARYGGAYVFTMTTSPAHEGHVENMVKHLASGASKIYHLSGTQKFELPKHQVRIADVFQAVENAKSRFTVLAWGLADTTLEDVFIKVANGAESSDILS 945
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28521102 28529274 + CaPI482276_01g014980.1 Cam01g1498 118580

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1498 945 Pfam ABC-2 family transporter protein 249 555 IPR013525 GO:0016020(InterPro)|GO:0140359(InterPro)
Cam01g1498 945 MobiDBLite consensus disorder prediction 579 601 - -
Cam01g1498 945 Pfam ABC transporter 645 789 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cam01g1498 945 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 30 936 IPR026082 GO:0005319(PANTHER)|GO:0006869(PANTHER)|GO:0016020(InterPro)|GO:0042626(PANTHER)|GO:0043231(PANTHER)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cam01g1498 945 CDD ABC_subfamily_A 627 848 - -
Cam01g1498 945 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 623 860 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cam01g1498 945 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 623 851 IPR027417 -
Cam01g1498 945 ProSitePatterns ABC transporters family signature. 762 776 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cam01g1498 945 SMART AAA_5 653 836 IPR003593 GO:0016887(InterPro)
Cam01g1498 945 Gene3D - 612 883 IPR027417 -
Cam01g1498 945 FunFam ABC transporter A family member 7 612 888 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1498 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1498 Cam-Chr1:28521102 Cam06g1777 Cam-Chr6:28937168 2.00E-75 dispersed
Cam10g0465 Cam-Chr10:7077459 Cam01g1498 Cam-Chr1:28521102 2.70E-10 transposed
Cam11g1633 Cam-Chr11:29059910 Cam01g1498 Cam-Chr1:28521102 5.00E-09 transposed
Cam01g1498 Cam-Chr1:28521102 Cam06g1776 Cam-Chr6:28927329 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g521 Blo04g00761 Blo16g00193 . . . . . . Cmo13g00963 Cmo18g00095 . . . . . Cpe20g00197 . . . . . . . . . . . . . . . Cone2ag0858 Cone16ag0154 . . . Csa01g00786 . Cme12g01757 . . Bda11g01691 . . . . . Sed08g2583 . . Cma13g00933 Cma18g00123 Car13g00773 Car18g00113 Cpe09g01069 . Bhi08g01405 Tan05g2090 Cmetu12g0772 . . . . Cla01g01430 Cam01g1498 Cec01g1538 Cco01g1583 Clacu01g1521 Cmu01g1413 Cre01g1331 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001221 4 5 2 3 3 2 0 2 2 2 2 2 3 2 2 3 2 1 3 2 2 2 3 2 2 2 2 3 8 2 75