Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1519 ATGCGCAACGAAGGGATGCCGGTGTCTGTGGCCGTCACCGCTGCTCGTGGTTTTGCTGCGATCGCCGCCGGAGAAGAAAAACCGAGCAGGAAGAGAGGGGTCGACGATAGGTGGAAGAAACTGAACCCTCCTGTTTTTGCCGTCGTTATGCCGCCGAGACGATATGCCGTTGGACGGGCCGATGAGGCCACTCACCCTGACTCCATTCGAGCCACCTTGGCTGAGTTCATTTCCACTTTCATCTTCGTTTTCGCTGGCGAAGGCTCTGTTCTCGCTCTTGATAAAATTTTCAGGCCAGCGGATTATGGAAGTTATGGCCATGGAAGTTACGGCCGAGGAGGACACGGTTACGGTCATGGTTATGGTTATGGTCGAAGGGGGGCGGACACGGGCAGAGCTGCATCAGATTTAGTAGTGATAGCGATAGCGCATGCATTTGCGCTGTTCTCGGCGGTGGCGGCGAGTATCAATATTTCGGGTGGGCATGTGAATCCTGCAGTAACTTTTGGGGCTCTTCTTGGGGGGAGGATCTCTCTTATCCGTGCATTCTTCTATTGGGTTGCTCAGATATTGGGTGCCATTGTTGCTTCACTTCTCTTGAGACTAGCAACGGGTGGCATGAGGCCTATGGGGTTCTTTGTGTCATCAGGAATATCAGAATTACACGGATTTCTACTAGAGATAGTGCTTACATTTGCTTTGGTGTACACAGTCTACGCAACAGCAATAGACCCAAAGAGGGGGAGTTTGGGAACAATAGCACCACTGGCAATCGGGTTAATAGTCGGGGCCAATATTCTGGTGGGTGGGGCCTTCGATGGGGCCTGCATGAACCCTGCCAGGGCTTTTGGGCCGTCTTTAGTGGGCTGGAGATGGGACAATCATTGGATCTATTGGATCGGCCCATTATTGGGAGGTGGGCTTGCGGCCCTTGTATATGAGTACTTGGTTATTCCCGTTGAACCTCCTCTTCATACGCACCAGCCCTTAGCTCCGGAGGATTACTGA 1008 52.48 MRNEGMPVSVAVTAARGFAAIAAGEEKPSRKRGVDDRWKKLNPPVFAVVMPPRRYAVGRADEATHPDSIRATLAEFISTFIFVFAGEGSVLALDKIFRPADYGSYGHGSYGRGGHGYGHGYGYGRRGADTGRAASDLVVIAIAHAFALFSAVAASINISGGHVNPAVTFGALLGGRISLIRAFFYWVAQILGAIVASLLLRLATGGMRPMGFFVSSGISELHGFLLEIVLTFALVYTVYATAIDPKRGSLGTIAPLAIGLIVGANILVGGAFDGACMNPARAFGPSLVGWRWDNHWIYWIGPLLGGGLAALVYEYLVIPVEPPLHTHQPLAPEDY 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28726109 28732850 - CaPI482276_01g015190.1 Cam01g1519 118601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1519 335 CDD MIP 70 316 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam01g1519 335 Gene3D Glycerol uptake facilitator protein. 54 321 IPR023271 -
Cam01g1519 335 FunFam Probable aquaporin TIP1-1 115 331 - -
Cam01g1519 335 ProSitePatterns MIP family signature. 162 170 IPR022357 -
Cam01g1519 335 Pfam Major intrinsic protein 63 313 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam01g1519 335 SUPERFAMILY Aquaporin-like 62 326 IPR023271 -
Cam01g1519 335 PANTHER AQUAPORIN-8 54 325 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Cam01g1519 335 PRINTS Major intrinsic protein family signature 226 244 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam01g1519 335 PRINTS Major intrinsic protein family signature 296 316 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam01g1519 335 PRINTS Major intrinsic protein family signature 70 89 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam01g1519 335 PRINTS Major intrinsic protein family signature 259 281 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam01g1519 335 PRINTS Major intrinsic protein family signature 181 200 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam01g1519 335 NCBIfam MIP family channel protein 74 313 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1519 Cam-Chr1:28726109 Cam10g1958 Cam-Chr10:33529225 3.90E-74 dispersed
Cam01g1519 Cam-Chr1:28726109 Cam04g0967 Cam-Chr4:23710415 4.80E-80 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1519 K09873 - csv:101208863 495.738