Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1526 ATGGATCCTCAACCTGAACCAGTCAGCTACATCTGTGGAGATTGTGGAATGGAGAACACTCTGAAGCAGGGTGATGTTATACAGTGCCGAGAGTGTGGTTATCGTATTCTCTACAAGAAGCGCACCCGTCGCACTTTTTCTTGTCTTGATTGGGGAAAGCTATTTCCGGAGAAGTTACAGAAAACGATGCAGTGTGCTCTTGTAAGAAGTAGTGATTTTCAGAAAGGTCTAGACAAAGGAAAGGAGTCGTTGGAATTGAGACTCGAGGAAAACAGTTGTTCCAGAGGAATTAAGGATTCTAAAGTTTCTTCGTTTGCCTGGAGGAACTTTTTTGATTACAGATGTGCCGTCATTAGTTTTCTTACAGTCGAATCTGATGGACTCTGGAGAATTGTTGCACTACCACCGCAATACGTAGATAGCTTGGATGTGAGCTGTCTGCCTCAAATGAATCGGTTTGCAGCTGAGAGAAAATTGGTCCAGAAAGGCCCTGCCTCTAATGGTACATATTCATTTAATTCATTCAGATGTAGAAGCTTGCTGGAGTCGAACAATAAGTTATTGGATAGTAAAGCAATTGAGTCGTCGAATAAATCCTCTGGCAAGTTCTCTTGCAGGAGTTCATGTTCTGGCTCTGCTTTGATGTTAAGTGACTCTAGTGCAATCTCTGCCATCCCAATTGGTGGAGCTAAATTGCAGAGATATGGGAAGAAAAATCCAAGAAAGAAGGCAAAAAAGAAAGAAATAGAATGTAAGAAGATATCTTCTGATTTTGTCTGTGCTGAAACAGAAGTATCATCCAAGGATTCTGCCCGTGGAAGTTTTTTGTCAGAAGCTTGTGGCAGTAATGATTCAGATTGTAGAGATGGATCTGTTTTGTGTTCTATTGCACGAGAAACTTTTCTGCCAGATTTTAGGGCCAGTAAAAATGATTTTGAACGAGATACTAAGAAAATTATTCAGCCACCTGGAATCACAGATTTGATATCCTCTAAAATTGATGACGAGCATGCATCTGAGGTTCCATCTTCTGCAATAAAGAATTTTAGTGGGTATTATCAAGTTTGTGGATCCGAAAACCAGGCCCTAGTCAAAGTACCTGGTTGTACCCATGTCAATGGGGGAGTAAATTCAAGAGAGAGGTTATTTGCCAGCAGCTGCAATGATTTTTGCCCTAAGGGTTCTTTGGATAATAATTCCCCAGATTCTAAGTGTTTTAGTTTAAACAGTACCTGTGATAATTTTAACTTGAAATTAAATGAAAAGAAAGGTTTTGGAGTTGATCTGTTGGAAGAACGAAGTTCACCTTCTAGAGAGAACTATTATTCTCATAACTCAGTAAGAGATGAAGTAGATGTGAATGCCAAAGTGGAGAAACCTAATCGTGGTATTCAGGGATGTACTGTGAGTGAAACTTGTTCGGTTTTACCTGGAAAGAAAACTAAACAAAATAAAAAATTGCCCGGGAGTTCAAGAATGATTAGATATGGTGGTCCAGGGAGTTCACAAAGGCGTACAGGGAAGGAAAACAGACATACTGTCTGGCAAAAGGTTCAAAGGAATAATAGTGGTGGATGTTGTGAACAGTTAGACCAAGTAAGTCCTGTCAGCAAACAGTTTAAAGGCATCTGTACTCCTGTTGTTGGTGTGCAAATGCCAAAGGTCAAGGATAAAAAAACGGGGAACAGAAAACAGCTGAAAGAAAAATTTCCCAGGAGGTTGAAAAGAAAAAATACTTCAGGACAAGAGAAGGTCTATCGTCCTACTAGGAACAGTTGTGGTAGTAATACTAGTTCAATGGTTCACAAACCACCAAATGAAAGGTTGGATATTCGACCAATGGACTTTGACATAAGAAGATCAAGTGGCGATCCAAGATCTCGTTTTCAAAATGATACTACTAATAAATGCACGACTTCTGAATCATTTGAAAGTACACAACTCTGTCTAGATGGATTGATGTCAAGCAAACTTATCTCCGATGGTTTGAATAGTCAAAAAGTAGAGAATGTCTCTAGCTCATTGCCAAGGGCCTGCAACTCCTTAAATCAGTCAAACCCGGTAGAGGTTCAGTCTCCTGTTTACCTTCCGCATCTTTTCTTTCAAGCAACAAAAGGAAGTTCTCTTGCTGAACGCAGCAAGCATAACAGCCAATCTAGATCACCCTTTCAAAACTGGTTGCCAAGCGGGGGAGAAGGTTCCAGATTGACCACCTTGGCCAGACCTGATTTTTCATCTCTGAAAGATGCAAGTACACAACCTGCTGAGTTTGGCACTTCAGAAAAATCAATTCAAGAACGAGTCAATTGCAACATAGTAGATCCTGTTTCTGTTGTCACTGAGGGGATTCAGCATTCTAGAGATGGGAGTCATGGTCCTTTAGAAAATGAATGTGAGGTGCAGAAGATGTATGGTTACGATACGACTGCACTACAGGATCATAGGTCTGAGTTTGATGTGGACGAGCATTTTAATTCCAAATCCTCATGTGAAGATGCGTCTAGAATGGAGCAAGCAGTGAATAATGCATGTAGGGCACAATTGGTATCTGAAGCTATTCAAATGGAAACTGGTATTCCAATCGCAGAGTTCGAAAGATTCCTTCATTTGTCCTCCCCTGTTATCAACCAGACACCCAAGCTAAGAAGTAGTGAAATTTACCCAAGAAATTCGCCAGGTGATGTGATTCCGTGTAGCAATGAGACTGCTGACATTTCTTTGGGTTGCCTGTGGCAATGGTATGAAAAGCATGGCAGCTATGGCTTAGAAATAAAAGCCAATGGTTACGAAAATTCAAATGGTTTTGGCACTGATAACTCTGCATTCCGTGCATATTTTGTTCCATTTCTTTCAGCTGTTCAACTATTCAAGAGCCATAAAACTCATGGGGGAACAACTACAGATCCTGTGGGATTTGATTCATGTGTAAGCGATATAAAAGTGAAGGAGCCGTCCACTTGTCATCTTCCAATATTTTCAGTCCTTTTTCCTAAGCCCTGTACTGATGATGCAAGTGCTTCGCGGGTTTGTAATCAGCTACATAGTTCAGAGCAACATTTGGCTTCTGAGAAGAAGAAATCTTCAGTACAATCAGTCAACTTAAAATTATCTGGAGAATCAGAACTTATTTTTGAATATTTTGAAGGGGAACAACCTCAGCAGAGAAGGCCATTATTTGATAAGATACATCAGCTGGTCGAGGGTGATGGACGTCTACAAGGAAAAATATACGGGGATCCGACCATGCTCAATTCCTTAACTTTGAATGATCTGCATGCTGGATCATGGTACTCAGTGGCATGGTATCCCATTTATAGGATACCAGATGGCAACCTTCGAGCTGCATTTTTGACTTACCACTCACTAGGACATTTTGTTTCTAGAACTTCCCAATCTAACTCTCCAGATACAAATTCTTGCTTAGTCTGTCCAGTTGTGGGTCTTCAAAGTTATAATGCACAGAATGAATGCTGGTTCGAGCCTAGAAACATTGCGCCCACATTTACCCCTGGCTTAAATTCTCCTAGAATTCTCGAGGAGCGCCTGAGGTCGCTGGAAGAGACTGCATCTCTCATGGCCAGAGCTGTGGTTAAGAAAGGAAATCTGAACTCCGAAAACATGCATCCAGATTATGAGTTCTTCCTCTCCCGGCGACTCTAG 3660 41.04 MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRTFSCLDWGKLFPEKLQKTMQCALVRSSDFQKGLDKGKESLELRLEENSCSRGIKDSKVSSFAWRNFFDYRCAVISFLTVESDGLWRIVALPPQYVDSLDVSCLPQMNRFAAERKLVQKGPASNGTYSFNSFRCRSLLESNNKLLDSKAIESSNKSSGKFSCRSSCSGSALMLSDSSAISAIPIGGAKLQRYGKKNPRKKAKKKEIECKKISSDFVCAETEVSSKDSARGSFLSEACGSNDSDCRDGSVLCSIARETFLPDFRASKNDFERDTKKIIQPPGITDLISSKIDDEHASEVPSSAIKNFSGYYQVCGSENQALVKVPGCTHVNGGVNSRERLFASSCNDFCPKGSLDNNSPDSKCFSLNSTCDNFNLKLNEKKGFGVDLLEERSSPSRENYYSHNSVRDEVDVNAKVEKPNRGIQGCTVSETCSVLPGKKTKQNKKLPGSSRMIRYGGPGSSQRRTGKENRHTVWQKVQRNNSGGCCEQLDQVSPVSKQFKGICTPVVGVQMPKVKDKKTGNRKQLKEKFPRRLKRKNTSGQEKVYRPTRNSCGSNTSSMVHKPPNERLDIRPMDFDIRRSSGDPRSRFQNDTTNKCTTSESFESTQLCLDGLMSSKLISDGLNSQKVENVSSSLPRACNSLNQSNPVEVQSPVYLPHLFFQATKGSSLAERSKHNSQSRSPFQNWLPSGGEGSRLTTLARPDFSSLKDASTQPAEFGTSEKSIQERVNCNIVDPVSVVTEGIQHSRDGSHGPLENECEVQKMYGYDTTALQDHRSEFDVDEHFNSKSSCEDASRMEQAVNNACRAQLVSEAIQMETGIPIAEFERFLHLSSPVINQTPKLRSSEIYPRNSPGDVIPCSNETADISLGCLWQWYEKHGSYGLEIKANGYENSNGFGTDNSAFRAYFVPFLSAVQLFKSHKTHGGTTTDPVGFDSCVSDIKVKEPSTCHLPIFSVLFPKPCTDDASASRVCNQLHSSEQHLASEKKKSSVQSVNLKLSGESELIFEYFEGEQPQQRRPLFDKIHQLVEGDGRLQGKIYGDPTMLNSLTLNDLHAGSWYSVAWYPIYRIPDGNLRAAFLTYHSLGHFVSRTSQSNSPDTNSCLVCPVVGLQSYNAQNECWFEPRNIAPTFTPGLNSPRILEERLRSLEETASLMARAVVKKGNLNSENMHPDYEFFLSRRL 1219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28805019 28819111 + CaPI482276_01g015260.1 Cam01g1526 118608

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1526 1219 MobiDBLite consensus disorder prediction 710 738 - -
Cam01g1526 1219 MobiDBLite consensus disorder prediction 710 732 - -
Cam01g1526 1219 FunFam DNA-directed RNA polymerases II, IV and V subunit 12 1 48 - -
Cam01g1526 1219 MobiDBLite consensus disorder prediction 480 511 - -
Cam01g1526 1219 MobiDBLite consensus disorder prediction 556 609 - -
Cam01g1526 1219 MobiDBLite consensus disorder prediction 584 603 - -
Cam01g1526 1219 PANTHER PHOTOSYSTEM II STABILITY/ASSEMBLY FACTOR HCF136, CHLOROPLASTIC 100 1218 - -
Cam01g1526 1219 Gene3D RNA polymerase ii, chain L 1 48 - -
Cam01g1526 1219 SMART rpolcxc3 8 49 IPR006591 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cam01g1526 1219 Pfam DNA directed RNA polymerase, 7 kDa subunit 10 41 IPR006591 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Cam01g1526 1219 Pfam Protein of unknown function (DUF789) 862 1214 IPR008507 -
Cam01g1526 1219 SUPERFAMILY RNA polymerase subunits 7 45 IPR029040 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1526 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1526 Cam-Chr1:28805019 Cam02g1798 Cam-Chr2:31082679 1.50E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g952 . . . . . . . . . Cmo18g00079 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00276 Csa01g00754 . Cme12g01789 . . . . . . . . . . . . Cma18g00102 . Car18g00092 Cpe09g01088 . Bhi08g01351 Tan05g2137 . . . . . Cla01g01459 Cam01g1526 Cec01g1567 Cco01g1614 Clacu01g1550 Cmu01g1440 Cre01g1362 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008692 0 4 0 0 0 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 4 2 2 34