Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1548 ATGAACAACGCCACGGCGGACAGCGGCGGATTTCTTTCCTCAAGCAACATCGGCGGTTTCGGCTACGGAATCGGCGTCTCCTTAGGGCTTTTGATTCTCATCACTACAATCCTCTTGGCTTCCTATTACTGTACCAGAAACGGTCTATCCTCCTCCGTCATTCAGAGGACCGCCAATCGCTCTTCACCGCAGGCGGAGGAGGAATTAGAAGCCGTCGTCGTCGAAATCGGACTCGATCAGGAGACGATTACGAGTTATCCGAAATTGCTGTACTCGGAAGCGAAGCTTCAGAAGAACGATTCGACTGCCTCTTGTTGTTCAATCTGTTTGGCCGATTACAAGAACTCGGATGTTCTTCGGCTTTTGCCTGATTGCGGTCATCTCTTTCATCTCAAGTGCGTCGATCCGTGGCTGAGGCTTCATCCGACCTGTCCGGTTTGCCGGACCTCGCCGATTCCGACGCCGTTGTCGACTCCTCTGGCGGAGCAAGTTCCATTGGCGAGTCGGCGCGATTGA 516 53.49 MNNATADSGGFLSSSNIGGFGYGIGVSLGLLILITTILLASYYCTRNGLSSSVIQRTANRSSPQAEEELEAVVVEIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNSDVLRLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29029853 29030368 + CaPI482276_01g015480.1 Cam01g1548 118630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1548 171 CDD RING-H2_EL5-like 105 148 - -
Cam01g1548 171 FunFam E3 ubiquitin-protein ligase ATL6 66 153 - -
Cam01g1548 171 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 152 IPR013083 -
Cam01g1548 171 SMART ring_2 106 147 IPR001841 -
Cam01g1548 171 Pfam Ring finger domain 105 148 IPR001841 -
Cam01g1548 171 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 14 165 IPR045899 -
Cam01g1548 171 SUPERFAMILY RING/U-box 82 153 - -
Cam01g1548 171 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1548 Cam-Chr1:29029853 Cam10g1782 Cam-Chr10:31897858 2.20E-44 dispersed
Cam01g1548 Cam-Chr1:29029853 Cam07g1528 Cam-Chr7:29911863 2.40E-19 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1548 - - - 0.0