Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam01g1580 | ATGCCTCTTGGTTGGGTAAAAAAATTGAGTAGAAACAAGGACCATCACAATCACCCCACTTCCTCTCTTAACCTCTTCAAGTCTTCTTCCCCCAAAACTCAACCTAAGAACCCCACCCACAAACCCAAGAGCTTCGATGAGGTTTCTGCTGTGAGTTTCTCACGCAATTCCCCGAGGTCCAGCAGGGATCTGGGCTCTTCTGGCGCTGCCTCTTCTGGGTTTTCCGGTTTTGACTCCGATAGTGGGGATAAAAGTCTTCCTCTTCCTCGACCTGCTATTTCCGGCCTTGGGATTGATCATGGACCCGGGAATGGATCTGGGTCGAGTTCGGTCTCCAGTATTAGTTCTTCCGGGTCTTCGGATGATCATCCATCTGCTCAAGAACAGCTTCAATTTGGAGCTTACAGAGGATTTGTCGATACGAGAATCGAGACAAGGCCAAGAAGTCCAGGTCCAGGATCAAAAGGACCCACCAGTCCTACATCACCTCTCAATCCACGGCTCTGTGGCATGAGTCTGGAGTCTCCTACAACTCATAAGCTGCCGCTTCCTCCAAGCCCTTCTTCCTTGAGCAGCACGAGAGCTATCAATATCGGCGATAATAACGCAGCTATACAATCAAAGTGGAAGAAAGGAAGGCTTCTAGGAAGGGGAACATTTGGGCATGTTTACCTTGGATTTAACAGTGTAAGTGGCCAAATGTGTGCAATTAAGGAGGTCAGGGTTATAAGTGATGACTCAACATCAAAGGAATGTCTCAAGCAATTGAACCAGGAGATTACTCTACTCAGTCAGCTGTCACATCCGAACATTGTCCGGTACTATGGTAGTGAAATGGGTGATGAGTCGCTCTCAGTCTACTTAGAATACATCTCCGGTGGCTCAATTCACAAATTACTTCAGGAATATGGCGCCTTCAAAGAACCTGTTATAAGAAATTATACCCGAAAGATTCTTTCCGGGCTTGCTTATCTGCATGGGAGAAATACAGTGCACAGGGACATAAAAGGGGCAAATATCTTAGTAGATCCGAAAGGCGAGGTCAAGTTGGCGGACTTTGGCATGGCAAAACATATAACGAATTGTACTTCGATGCTTTCCTTTAAAGGCAGTCCTTATTGGATGGCCCCTGAGGTTGTGATGAATACAAATGGCTACAGTCTTGCTGTAGACATTTGGAGTTTAGGATGTACGGTTCTTGAAATGGCAACGTCTAAACCGCCTTGGAGCAAATACGAAGGGGTTGCTGCCATTTTCAAAATTGGGAATAGTAGAGACATTCCTGAAATTCCAGACCATCTCTCCAATGATGCTAAAAATTTTGTGCTATTATGTTTGCAACGGGATCCATCTGCACGTCCTTCTGCTGCAGACCTACTGGATCACCCTTTTGTTCAAGATGCAGTAACACCAAGAGCATCTGATGTTAACTTCTCCACGGATGCATTCCTCTTTAGCATCGATGGAATCCAGACTCCGCCATTGTTAGATCGGCATCCAAACAGAAAAAGTATAAGCATATGCGATGGAGATTATGTGACAAACCCAACATTCTCTTCCAGAGCTCCGAGGAGTTCTAGCAGGGGAAATGGAAGATTCACATCCTTGCCTGGCTCTCCATGTTCGAGTCCAATAACCGGACACCAGAGCTATTATCTTTCACCACCTCACTCATCTCACATGGGGATGAGTCAAAGCGGATACAATTTGAATGAATACACGTATAACACGAGACCGAACACATTGTTCACCCTTGATCCTTCGCGAGATTCATCGCTATTGAAAGTGCAGACTCATCTTGGATCACCAAGAAGAACTCTTTGA | 1824 | 45.72 | MPLGWVKKLSRNKDHHNHPTSSLNLFKSSSPKTQPKNPTHKPKSFDEVSAVSFSRNSPRSSRDLGSSGAASSGFSGFDSDSGDKSLPLPRPAISGLGIDHGPGNGSGSSSVSSISSSGSSDDHPSAQEQLQFGAYRGFVDTRIETRPRSPGPGSKGPTSPTSPLNPRLCGMSLESPTTHKLPLPPSPSSLSSTRAINIGDNNAAIQSKWKKGRLLGRGTFGHVYLGFNSVSGQMCAIKEVRVISDDSTSKECLKQLNQEITLLSQLSHPNIVRYYGSEMGDESLSVYLEYISGGSIHKLLQEYGAFKEPVIRNYTRKILSGLAYLHGRNTVHRDIKGANILVDPKGEVKLADFGMAKHITNCTSMLSFKGSPYWMAPEVVMNTNGYSLAVDIWSLGCTVLEMATSKPPWSKYEGVAAIFKIGNSRDIPEIPDHLSNDAKNFVLLCLQRDPSARPSAADLLDHPFVQDAVTPRASDVNFSTDAFLFSIDGIQTPPLLDRHPNRKSISICDGDYVTNPTFSSRAPRSSSRGNGRFTSLPGSPCSSPITGHQSYYLSPPHSSHMGMSQSGYNLNEYTYNTRPNTLFTLDPSRDSSLLKVQTHLGSPRRTL | 607 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 29279225 | 29283287 | - | CaPI482276_01g015800.1 | Cam01g1580 | 118662 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam01g1580 | 607 | Pfam | Protein kinase domain | 210 | 465 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cam01g1580 | 607 | ProSiteProfiles | Protein kinase domain profile. | 209 | 465 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cam01g1580 | 607 | MobiDBLite | consensus disorder prediction | 21 | 38 | - | - | |
Cam01g1580 | 607 | MobiDBLite | consensus disorder prediction | 49 | 79 | - | - | |
Cam01g1580 | 607 | CDD | STKc_MEKK1_plant | 208 | 465 | - | - | |
Cam01g1580 | 607 | FunFam | Mitogen-activated protein kinase kinase kinase | 207 | 488 | - | - | |
Cam01g1580 | 607 | MobiDBLite | consensus disorder prediction | 103 | 125 | - | - | |
Cam01g1580 | 607 | SMART | serkin_6 | 209 | 465 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cam01g1580 | 607 | Gene3D | Transferase(Phosphotransferase) domain 1 | 205 | 482 | - | - | |
Cam01g1580 | 607 | PANTHER | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED | 27 | 472 | IPR050538 | - | |
Cam01g1580 | 607 | SUPERFAMILY | Protein kinase-like (PK-like) | 207 | 555 | IPR011009 | - | |
Cam01g1580 | 607 | ProSitePatterns | Protein kinases ATP-binding region signature. | 215 | 238 | IPR017441 | GO:0005524(InterPro) | |
Cam01g1580 | 607 | MobiDBLite | consensus disorder prediction | 1 | 125 | - | - | |
Cam01g1580 | 607 | MobiDBLite | consensus disorder prediction | 143 | 190 | - | - | |
Cam01g1580 | 607 | MobiDBLite | consensus disorder prediction | 518 | 542 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam01g1580 | Cam-Chr1:29279225 | Cam05g0978 | Cam-Chr5:8845141 | 8.10E-118 | dispersed | |
Cam01g1580 | Cam-Chr1:29279225 | Cam01g1708 | Cam-Chr1:30668315 | 8.70E-88 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
84880 | PF00069 | Pkinase | 1.10E-71 | CL0016 | Cam | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam01g1580 | K04421 | - | csv:101203907 | 1000.73 |