Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1580 ATGCCTCTTGGTTGGGTAAAAAAATTGAGTAGAAACAAGGACCATCACAATCACCCCACTTCCTCTCTTAACCTCTTCAAGTCTTCTTCCCCCAAAACTCAACCTAAGAACCCCACCCACAAACCCAAGAGCTTCGATGAGGTTTCTGCTGTGAGTTTCTCACGCAATTCCCCGAGGTCCAGCAGGGATCTGGGCTCTTCTGGCGCTGCCTCTTCTGGGTTTTCCGGTTTTGACTCCGATAGTGGGGATAAAAGTCTTCCTCTTCCTCGACCTGCTATTTCCGGCCTTGGGATTGATCATGGACCCGGGAATGGATCTGGGTCGAGTTCGGTCTCCAGTATTAGTTCTTCCGGGTCTTCGGATGATCATCCATCTGCTCAAGAACAGCTTCAATTTGGAGCTTACAGAGGATTTGTCGATACGAGAATCGAGACAAGGCCAAGAAGTCCAGGTCCAGGATCAAAAGGACCCACCAGTCCTACATCACCTCTCAATCCACGGCTCTGTGGCATGAGTCTGGAGTCTCCTACAACTCATAAGCTGCCGCTTCCTCCAAGCCCTTCTTCCTTGAGCAGCACGAGAGCTATCAATATCGGCGATAATAACGCAGCTATACAATCAAAGTGGAAGAAAGGAAGGCTTCTAGGAAGGGGAACATTTGGGCATGTTTACCTTGGATTTAACAGTGTAAGTGGCCAAATGTGTGCAATTAAGGAGGTCAGGGTTATAAGTGATGACTCAACATCAAAGGAATGTCTCAAGCAATTGAACCAGGAGATTACTCTACTCAGTCAGCTGTCACATCCGAACATTGTCCGGTACTATGGTAGTGAAATGGGTGATGAGTCGCTCTCAGTCTACTTAGAATACATCTCCGGTGGCTCAATTCACAAATTACTTCAGGAATATGGCGCCTTCAAAGAACCTGTTATAAGAAATTATACCCGAAAGATTCTTTCCGGGCTTGCTTATCTGCATGGGAGAAATACAGTGCACAGGGACATAAAAGGGGCAAATATCTTAGTAGATCCGAAAGGCGAGGTCAAGTTGGCGGACTTTGGCATGGCAAAACATATAACGAATTGTACTTCGATGCTTTCCTTTAAAGGCAGTCCTTATTGGATGGCCCCTGAGGTTGTGATGAATACAAATGGCTACAGTCTTGCTGTAGACATTTGGAGTTTAGGATGTACGGTTCTTGAAATGGCAACGTCTAAACCGCCTTGGAGCAAATACGAAGGGGTTGCTGCCATTTTCAAAATTGGGAATAGTAGAGACATTCCTGAAATTCCAGACCATCTCTCCAATGATGCTAAAAATTTTGTGCTATTATGTTTGCAACGGGATCCATCTGCACGTCCTTCTGCTGCAGACCTACTGGATCACCCTTTTGTTCAAGATGCAGTAACACCAAGAGCATCTGATGTTAACTTCTCCACGGATGCATTCCTCTTTAGCATCGATGGAATCCAGACTCCGCCATTGTTAGATCGGCATCCAAACAGAAAAAGTATAAGCATATGCGATGGAGATTATGTGACAAACCCAACATTCTCTTCCAGAGCTCCGAGGAGTTCTAGCAGGGGAAATGGAAGATTCACATCCTTGCCTGGCTCTCCATGTTCGAGTCCAATAACCGGACACCAGAGCTATTATCTTTCACCACCTCACTCATCTCACATGGGGATGAGTCAAAGCGGATACAATTTGAATGAATACACGTATAACACGAGACCGAACACATTGTTCACCCTTGATCCTTCGCGAGATTCATCGCTATTGAAAGTGCAGACTCATCTTGGATCACCAAGAAGAACTCTTTGA 1824 45.72 MPLGWVKKLSRNKDHHNHPTSSLNLFKSSSPKTQPKNPTHKPKSFDEVSAVSFSRNSPRSSRDLGSSGAASSGFSGFDSDSGDKSLPLPRPAISGLGIDHGPGNGSGSSSVSSISSSGSSDDHPSAQEQLQFGAYRGFVDTRIETRPRSPGPGSKGPTSPTSPLNPRLCGMSLESPTTHKLPLPPSPSSLSSTRAINIGDNNAAIQSKWKKGRLLGRGTFGHVYLGFNSVSGQMCAIKEVRVISDDSTSKECLKQLNQEITLLSQLSHPNIVRYYGSEMGDESLSVYLEYISGGSIHKLLQEYGAFKEPVIRNYTRKILSGLAYLHGRNTVHRDIKGANILVDPKGEVKLADFGMAKHITNCTSMLSFKGSPYWMAPEVVMNTNGYSLAVDIWSLGCTVLEMATSKPPWSKYEGVAAIFKIGNSRDIPEIPDHLSNDAKNFVLLCLQRDPSARPSAADLLDHPFVQDAVTPRASDVNFSTDAFLFSIDGIQTPPLLDRHPNRKSISICDGDYVTNPTFSSRAPRSSSRGNGRFTSLPGSPCSSPITGHQSYYLSPPHSSHMGMSQSGYNLNEYTYNTRPNTLFTLDPSRDSSLLKVQTHLGSPRRTL 607
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 29279225 29283287 - CaPI482276_01g015800.1 Cam01g1580 118662
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1580 607 Pfam Protein kinase domain 210 465 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g1580 607 ProSiteProfiles Protein kinase domain profile. 209 465 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g1580 607 MobiDBLite consensus disorder prediction 21 38 - -
Cam01g1580 607 MobiDBLite consensus disorder prediction 49 79 - -
Cam01g1580 607 CDD STKc_MEKK1_plant 208 465 - -
Cam01g1580 607 FunFam Mitogen-activated protein kinase kinase kinase 207 488 - -
Cam01g1580 607 MobiDBLite consensus disorder prediction 103 125 - -
Cam01g1580 607 SMART serkin_6 209 465 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g1580 607 Gene3D Transferase(Phosphotransferase) domain 1 205 482 - -
Cam01g1580 607 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 27 472 IPR050538 -
Cam01g1580 607 SUPERFAMILY Protein kinase-like (PK-like) 207 555 IPR011009 -
Cam01g1580 607 ProSitePatterns Protein kinases ATP-binding region signature. 215 238 IPR017441 GO:0005524(InterPro)
Cam01g1580 607 MobiDBLite consensus disorder prediction 1 125 - -
Cam01g1580 607 MobiDBLite consensus disorder prediction 143 190 - -
Cam01g1580 607 MobiDBLite consensus disorder prediction 518 542 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1580 Cam-Chr1:29279225 Cam05g0978 Cam-Chr5:8845141 8.10E-118 dispersed
Cam01g1580 Cam-Chr1:29279225 Cam01g1708 Cam-Chr1:30668315 8.70E-88 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84880 PF00069 Pkinase 1.10E-71 CL0016 Cam PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1580 K04421 - csv:101203907 1000.73