Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1591 ATGGACCCCCATCACCTCCCAAACCCCTCTTCTCATCTCCATCACTCCGCCATGGAAGACCACCATATCGACCTTCACCATCATCACCACGACCCTGACCTAGATTCCATTTGGCCGTCGTTGTTGCCATTCCAACTCCCCGACTCTCACGATCAACAACTCCCCTCCTCTTCCACCCATCTGCTGATAGGCTACGGTACTCCGAGTTCTGGAACAGGTGATGATGAAGAAGAACCGGAAGAAGAGTTAGGTGCTATGAAGGAGATGATGTATAAGATTGCGGCAATGCAGCCAGTGGACATCGACCCTTCAACTATCCGAAAGCCTAAGCGACGGAACGTGCGGATTAGTGATGACCCGCAAAGCATCGCAGCTCGTCTCCGACGGGAGAGGATCAGTGAGAAAATCAGAATTCTTCAAAGGCTTGTACCTGGAGGGACCAAGATGGACACAGCTTCAATGTTGGATGAAGCCATTCGCTATGTCAAGTTCTTGAAGAGACAAATTCGGTTGCTGCAGTCAAGTCAGCCGCCGCAACAGCCAACCACCAGCGGTGGAGCCGCCGCTGTCGGCGGAGGATGGCCTTTTCCTTTCCATAAGGCTAATGGTTCAACCTCCTCATCCACTTCCATGGAGACTACTCCTGCCATTACACCATCAGGATGGAAAGTTTGTTTGGCCGACTCTTCTTCCTGGAATTTACACTGA 708 51.55 MDPHHLPNPSSHLHHSAMEDHHIDLHHHHHDPDLDSIWPSLLPFQLPDSHDQQLPSSSTHLLIGYGTPSSGTGDDEEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSSQPPQQPTTSGGAAAVGGGWPFPFHKANGSTSSSTSMETTPAITPSGWKVCLADSSSWNLH 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29395786 29397378 - CaPI482276_01g015910.1 Cam01g1591 118673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1591 235 MobiDBLite consensus disorder prediction 48 66 - -
Cam01g1591 235 Gene3D - 119 182 IPR036638 GO:0046983(InterPro)
Cam01g1591 235 FunFam BHLH transcription factor 119 183 - -
Cam01g1591 235 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 121 175 IPR036638 GO:0046983(InterPro)
Cam01g1591 235 Pfam Helix-loop-helix DNA-binding domain 125 166 IPR011598 GO:0046983(InterPro)
Cam01g1591 235 SMART finulus 122 171 IPR011598 GO:0046983(InterPro)
Cam01g1591 235 MobiDBLite consensus disorder prediction 200 214 - -
Cam01g1591 235 CDD bHLH_AtIND_like 117 174 - -
Cam01g1591 235 MobiDBLite consensus disorder prediction 48 81 - -
Cam01g1591 235 MobiDBLite consensus disorder prediction 173 214 - -
Cam01g1591 235 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 116 165 IPR011598 GO:0046983(InterPro)
Cam01g1591 235 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 9 207 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1591 Cam-Chr1:29395786 Cam02g1322 Cam-Chr2:25777739 2.50E-35 dispersed
Cam01g1591 Cam-Chr1:29395786 Cam08g2075 Cam-Chr8:26298396 1.30E-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51276 PF00010 HLH 1.50E-06 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1591 - - - 0.0