Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1600 ATGAATACAATGGAATTTGAATCCATTGAGTTCCTCACCAATTACAATTATTTTTCATCAGTTGATCAAACCTTTTTCCAAAGCCATGAATTTTCTGAATGCAGACAAGCAAATTCTTGCTCTTCTCTCTCAGAGAATTCCTCTCAAAATTCCATCCAAGAAGGAAGCTTTTTGGAATATGATGATCAAAATTTGCTTGATCAATTTGATCCAATCAATTACAACCCTGAAGATTTCCTCAAAATTTCCCCTGTAGATCCTCAAAACATTGAAGAATTGAGCAATTCAAGACATGTAGAAGAAGAAGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAACAAGTCCAATAATAACATTTTCAAGGGAATTCAAGCAGAGCTAATGGAAGAAGAGAGCTTAACAGATCTATTATTAGCAGCAGCTGAAGCAATTGAAGCACAAAACCATCTCCTTGTTTCAAATTTGATTGAAAAGCTGAAGAATTTACTTTTATATGATATGGGTTCATCTTCATTCAATCAATTGGCTTGGTTTTTCACCCAAGGCCTTCATTACAAGACTCTTGATTATAATATTCTTGCAGCTGATTATCAAATCAAGATTAGTAATAACTCCATGTCAGCCTTTCAGATGCTTCAGCAGCTTTCTCCTTATATAAAGTTTGCTCATTTCACTGCCAATCAAGCAATTCTTGAAGCAGCAGAAGGGGAAAAGCTGATTCATATTATAGATTTTGATATCATGGAAGGAATTCAATGGCCACCATTAATGGCCGATCTTGCAGCTAAGAAAGAGGTTTGTTCATTGAGATTGACAGCCATTGTACAAGACAATGAAAGTGAAAGAAAGATTATTGAGCAAACAGGGAGGAGACTAAGTGAATTTGCGAAATCAATCAATTTCCCTTTCATATTTGATCAGATGGGAATTGAAAAAGAAGACAGCTTTGAAGGAATTCAAGTGTTGGGTGAGACAGTAATTGCCAATTGTAGTGGCATTTTTCATCATATTTTAAGCTATAAAAACTTATCAAAGCTTGAAACTTTTTTAGATGGGGTTTCAAAACTTTCCCCCAAATGTGTAGTTTTAGTTGAAGAAGAGCTTTTTAAGGTCACTAAGGAGCTTGGGCCTCAACCAATGTCATTTGTGGAGTTTTTCTTTGAAGCTTTTCATCATTTCTCTGCTCTTTCAGACTCATTTTTGAGATGCTTTTCTGGGGTTTATGAAAATGGATTCAAACAAGTGATGGAAGAGTTTTTAGGGACAAGAATTTTGGAATCGGTTACTCAATTCCCTTGTGATAAAAAATATGTGTGGAAAAGTGCTTTTGACCACTTGAAAGGTTACAAGAAAATTCCTTTTAGTTCTTTCAATTGCTCTCAAGCTAAGTATTTGATTAGTCTTTTCAGAGGAGATTTTTGGGTGCAACATGAGAAGTGTAGCTTAAGCTTGTGTTGGAAATCAAGGCCCTTGTGTACAGCTACAATTTGGGTTCCCAAGAGTGGCAAATTGAAGAGTTTTTACTAA 1536 35.16 MNTMEFESIEFLTNYNYFSSVDQTFFQSHEFSECRQANSCSSLSENSSQNSIQEGSFLEYDDQNLLDQFDPINYNPEDFLKISPVDPQNIEELSNSRHVEEEDEEEEEEEEEEEENKSNNNIFKGIQAELMEEESLTDLLLAAAEAIEAQNHLLVSNLIEKLKNLLLYDMGSSSFNQLAWFFTQGLHYKTLDYNILAADYQIKISNNSMSAFQMLQQLSPYIKFAHFTANQAILEAAEGEKLIHIIDFDIMEGIQWPPLMADLAAKKEVCSLRLTAIVQDNESERKIIEQTGRRLSEFAKSINFPFIFDQMGIEKEDSFEGIQVLGETVIANCSGIFHHILSYKNLSKLETFLDGVSKLSPKCVVLVEEELFKVTKELGPQPMSFVEFFFEAFHHFSALSDSFLRCFSGVYENGFKQVMEEFLGTRILESVTQFPCDKKYVWKSAFDHLKGYKKIPFSSFNCSQAKYLISLFRGDFWVQHEKCSLSLCWKSRPLCTATIWVPKSGKLKSFY 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29541850 29543385 - CaPI482276_01g016000.1 Cam01g1600 118682

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1600 511 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 109 500 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cam01g1600 511 MobiDBLite consensus disorder prediction 98 116 - -
Cam01g1600 511 ProSiteProfiles GRAS family profile. 127 501 IPR005202 -
Cam01g1600 511 Pfam GRAS domain family 137 500 IPR005202 -
Cam01g1600 511 Coils Coil 90 122 - -
Cam01g1600 511 MobiDBLite consensus disorder prediction 91 121 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1600 K27745 - - csv:101207036 781.171
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1600 Cam-Chr1:29541850 Cam08g0989 Cam-Chr8:15939172 6.10E-42 dispersed
Cam01g1600 Cam-Chr1:29541850 Cam10g2080 Cam-Chr10:34543467 2.60E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1245 . . . . . . . . . . . Cma07g00786 . Car07g00773 Sed14g0002 Cpe19g00541 . Bhi03g01383 Tan03g1333 Cmetu08g0890 . Hepe04g1128 . . Cla01g01532 Cam01g1600 Cec04g1245 Cco04g1314 Clacu01g1625 Cmu01g1511 Cre04g1190 . . . . Lsi01g01133 . . Cme08g01067 . . . . . . . . . . Cmo07g00810 . . . . . . . . . . . . . . . . . . . . . Csa06g02799 Chy02g01036 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013288 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 27
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51278 PF03514 GRAS 8.80E-70 CL0063 Cam TF