Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1603 ATGGCCGACGCCGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGGCTGGCTTTGCTGGTGATGATGCTCCTAGGGCAGTTTTCCCCAGTATTGTTGGTCGTCCCCGACATACCGGTGTCATGGTTGGGATGGGCCAAAAAGATGCTTATGTTGGGGATGAAGCTCAGTCTAAAAGAGGTATCCTTACCTTGAAATATCCCATTGAACATGGTATAGTCAGTAACTGGGATGACATGGAAAAGATTTGGCATCACACATTCTACAATGAGCTTCGTGTTGCTCCCGAAGAGCACCCTGTGCTTCTGACTGAGGCTCCACTCAACCCAAAGGCTAACAGGGAAAAGATGACTCAAATCATGTTTGAGACATTCAATGTGCCTGCTATGTATGTTGCCATCCAGGCCGTTCTGTCCCTCTATGCTAGTGGGCGTACCACTGGTATCGTGCTGGATTCTGGTGATGGTGTGAGTCACACTGTTCCCATCTACGAGGGTTACGCCCTCCCTCATGCCATTCTCCGTTTGGACCTTGCTGGTCGTGACCTTACTGATGCTCTCATGAAGATTCTCACTGAAAGAGGTTACATGTTCACCACCACTGCTGAACGGGAAATTGTCCGTGACATGAAGGAGAAGCTGGCATATGTTGCTCTTGACTACGAACAAGAACTTGAGACAGCAAAGAGCAGTTCCTCCATTGAGAAAAACTACGAACTTCCTGATGGACAAGTCATCACCATTGGAGCTGAGAGATTCCGTTGCCCAGAAGTTCTATTCCAGCCATCTCTCATCGGTATGGAAGCTGCAGGAATCCACGAAACTACCTACAACTCCATCATGAAGTGTGATGTAGATATCAGAAAGGACCTGTATGGAAACATTGTCCTCAGTGGTGGTTCAACCATGTTCCCTGGCATTGCAGACAGGATGAGCAAGGAAATCACAGCCCTTGCTCCCAGCAGCATGAAGATTAAGGTCGTTGCGCCACCCGAAAGGAAATACAGTGTCTGGATTGGAGGGTCTATTCTTGCATCTCTAAGTACCTTCCAGCAGGAAGTGCTTCTAAGCTCTGTCTATTTTCTTGATGACGATGGTGATGATGATGATGATGATGATGAACCTCCTCTGATAGTACAAATCACTTATTCTGGGATGAGTATTTTGGCAAAAGCTGCTTTTGCATCTGGCCTCTCCCTCCTTCTTCAGGCATTGACATTTGTTGTGGCCATTGCAGTTGAAACAAATCTTTCACAATCGAAGTTCGTCTCCTTGCTGTTCTTTACTGTGCAAACTGTTGGGACTCTCTTCTTACTGCCCCCCACCATTTATTTCAAAAGAAAGGAAATGGCATGTTTATCAGTAGGAGATTTGTGGAAGATTTTCATGCAGGCCATTTTGGGGTTCACATTGGGTTTGAATGCTTATGGGTTAGGAGTTAAGTATACATCAGCAACTTTGGGTGCTGCAGCCTTTAATTGTGTTCCTGTCACCACATTCTTCTTTGCTCTTATTTCAAGGATGGAGAAAGTAAACATAAGGAAAGCAAGTGGAATGGCAAAGATTGGAGGCATAATGTTGTGCATTGCAGGGGTTGCAGTTCTTGCATTTTACAAAGGCCCTTATTTCAAACCACTCTTCAATTTTCACCTTTTTCAAATCCATCAATCTCATGTATCTTCCCAAAAAACATGGATTCTTGGTTGCTTTTTGCTCCTTGTTTCTTCCCTTTCATGGGGTTTGTGGTTTGTCCTTCAGGCTTGGGTTTTAAAGACTTGCCCATCTCCACTTTTGTTAACATTTGGACAGACATTTTCAAGTGCCATTCAATCTTTCGTTGTGGCTATTGCAATAGAAAGAAATCCTTCTCAATGGAAATTGGCTTGGAATATTCGTCTCTTTGCTGTTCTTTATTGTGGAATTTTTGCAATGTGTGTTGCAAACTATTTGTCAAGTTGGGTGATAAAAAAGAAGGGTCCAGTTTTCCAAGCTGTTTCCACACCCTTCAATCTCATTTTCACACTCATTGGTTCAGAATTTCTTTTAAATGATGGAGTTAGCTTGGGAAGTATAATAGGTGGCATGTTGCTGGTTTTGAGCCTTTATAGTGTTTTATGGGGAAAAAAGAAGGAAATGAATTGTCACGATACAGAAAATTACAAGACTGATTCAGTTCCAGTGGAAAAAGAAATGTTAGATCATCATATTTGA 2223 43.32 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQEVLLSSVYFLDDDGDDDDDDDEPPLIVQITYSGMSILAKAAFASGLSLLLQALTFVVAIAVETNLSQSKFVSLLFFTVQTVGTLFLLPPTIYFKRKEMACLSVGDLWKIFMQAILGFTLGLNAYGLGVKYTSATLGAAAFNCVPVTTFFFALISRMEKVNIRKASGMAKIGGIMLCIAGVAVLAFYKGPYFKPLFNFHLFQIHQSHVSSQKTWILGCFLLLVSSLSWGLWFVLQAWVLKTCPSPLLLTFGQTFSSAIQSFVVAIAIERNPSQWKLAWNIRLFAVLYCGIFAMCVANYLSSWVIKKKGPVFQAVSTPFNLIFTLIGSEFLLNDGVSLGSIIGGMLLVLSLYSVLWGKKKEMNCHDTENYKTDSVPVEKEMLDHHI 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29591689 29602497 + CaPI482276_01g016030.1 Cam01g1603 118685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1603 740 FunFam Major actin 261 340 - -
Cam01g1603 740 Gene3D - 140 340 - -
Cam01g1603 740 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Cam01g1603 740 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cam01g1603 740 Gene3D Actin; Chain A, domain 4 182 273 - -
Cam01g1603 740 Pfam EamA-like transporter family 571 709 IPR000620 GO:0016020(InterPro)
Cam01g1603 740 Pfam EamA-like transporter family 402 538 IPR000620 GO:0016020(InterPro)
Cam01g1603 740 SUPERFAMILY Multidrug resistance efflux transporter EmrE 436 543 - -
Cam01g1603 740 FunFam Actin, alpha skeletal muscle 3 160 - -
Cam01g1603 740 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cam01g1603 740 SUPERFAMILY Multidrug resistance efflux transporter EmrE 631 714 - -
Cam01g1603 740 Gene3D - 10 360 - -
Cam01g1603 740 SMART actin_3 7 365 IPR004000 -
Cam01g1603 740 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cam01g1603 740 PRINTS Actin signature 51 62 IPR004000 -
Cam01g1603 740 PRINTS Actin signature 117 130 IPR004000 -
Cam01g1603 740 PRINTS Actin signature 142 161 IPR004000 -
Cam01g1603 740 PRINTS Actin signature 63 85 IPR004000 -
Cam01g1603 740 PRINTS Actin signature 238 254 IPR004000 -
Cam01g1603 740 PRINTS Actin signature 28 37 IPR004000 -
Cam01g1603 740 FunFam Actin, muscle 182 273 - -
Cam01g1603 740 Pfam Actin 5 359 IPR004000 -
Cam01g1603 740 SUPERFAMILY Actin-like ATPase domain 149 359 IPR043129 -
Cam01g1603 740 PANTHER ACTIN 8 357 IPR004000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1603 Cam-Chr1:29591689 Cam10g1718 Cam-Chr10:31211794 3.80E-202 dispersed
Cam01g1603 Cam-Chr1:29591689 Cam01g1606 Cam-Chr1:29623737 9.60E-105 proximal
Cam01g1603 Cam-Chr1:29591689 Cam02g0073 Cam-Chr2:1837829 1.30E-194 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1603 K10355 - csv:101220617 711.835