Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1603 ATGGCCGACGCCGAGGATATTCAGCCACTTGTCTGTGACAATGGAACTGGAATGGTGAAGGCTGGCTTTGCTGGTGATGATGCTCCTAGGGCAGTTTTCCCCAGTATTGTTGGTCGTCCCCGACATACCGGTGTCATGGTTGGGATGGGCCAAAAAGATGCTTATGTTGGGGATGAAGCTCAGTCTAAAAGAGGTATCCTTACCTTGAAATATCCCATTGAACATGGTATAGTCAGTAACTGGGATGACATGGAAAAGATTTGGCATCACACATTCTACAATGAGCTTCGTGTTGCTCCCGAAGAGCACCCTGTGCTTCTGACTGAGGCTCCACTCAACCCAAAGGCTAACAGGGAAAAGATGACTCAAATCATGTTTGAGACATTCAATGTGCCTGCTATGTATGTTGCCATCCAGGCCGTTCTGTCCCTCTATGCTAGTGGGCGTACCACTGGTATCGTGCTGGATTCTGGTGATGGTGTGAGTCACACTGTTCCCATCTACGAGGGTTACGCCCTCCCTCATGCCATTCTCCGTTTGGACCTTGCTGGTCGTGACCTTACTGATGCTCTCATGAAGATTCTCACTGAAAGAGGTTACATGTTCACCACCACTGCTGAACGGGAAATTGTCCGTGACATGAAGGAGAAGCTGGCATATGTTGCTCTTGACTACGAACAAGAACTTGAGACAGCAAAGAGCAGTTCCTCCATTGAGAAAAACTACGAACTTCCTGATGGACAAGTCATCACCATTGGAGCTGAGAGATTCCGTTGCCCAGAAGTTCTATTCCAGCCATCTCTCATCGGTATGGAAGCTGCAGGAATCCACGAAACTACCTACAACTCCATCATGAAGTGTGATGTAGATATCAGAAAGGACCTGTATGGAAACATTGTCCTCAGTGGTGGTTCAACCATGTTCCCTGGCATTGCAGACAGGATGAGCAAGGAAATCACAGCCCTTGCTCCCAGCAGCATGAAGATTAAGGTCGTTGCGCCACCCGAAAGGAAATACAGTGTCTGGATTGGAGGGTCTATTCTTGCATCTCTAAGTACCTTCCAGCAGGAAGTGCTTCTAAGCTCTGTCTATTTTCTTGATGACGATGGTGATGATGATGATGATGATGATGAACCTCCTCTGATAGTACAAATCACTTATTCTGGGATGAGTATTTTGGCAAAAGCTGCTTTTGCATCTGGCCTCTCCCTCCTTCTTCAGGCATTGACATTTGTTGTGGCCATTGCAGTTGAAACAAATCTTTCACAATCGAAGTTCGTCTCCTTGCTGTTCTTTACTGTGCAAACTGTTGGGACTCTCTTCTTACTGCCCCCCACCATTTATTTCAAAAGAAAGGAAATGGCATGTTTATCAGTAGGAGATTTGTGGAAGATTTTCATGCAGGCCATTTTGGGGTTCACATTGGGTTTGAATGCTTATGGGTTAGGAGTTAAGTATACATCAGCAACTTTGGGTGCTGCAGCCTTTAATTGTGTTCCTGTCACCACATTCTTCTTTGCTCTTATTTCAAGGATGGAGAAAGTAAACATAAGGAAAGCAAGTGGAATGGCAAAGATTGGAGGCATAATGTTGTGCATTGCAGGGGTTGCAGTTCTTGCATTTTACAAAGGCCCTTATTTCAAACCACTCTTCAATTTTCACCTTTTTCAAATCCATCAATCTCATGTATCTTCCCAAAAAACATGGATTCTTGGTTGCTTTTTGCTCCTTGTTTCTTCCCTTTCATGGGGTTTGTGGTTTGTCCTTCAGGCTTGGGTTTTAAAGACTTGCCCATCTCCACTTTTGTTAACATTTGGACAGACATTTTCAAGTGCCATTCAATCTTTCGTTGTGGCTATTGCAATAGAAAGAAATCCTTCTCAATGGAAATTGGCTTGGAATATTCGTCTCTTTGCTGTTCTTTATTGTGGAATTTTTGCAATGTGTGTTGCAAACTATTTGTCAAGTTGGGTGATAAAAAAGAAGGGTCCAGTTTTCCAAGCTGTTTCCACACCCTTCAATCTCATTTTCACACTCATTGGTTCAGAATTTCTTTTAAATGATGGAGTTAGCTTGGGAAGTATAATAGGTGGCATGTTGCTGGTTTTGAGCCTTTATAGTGTTTTATGGGGAAAAAAGAAGGAAATGAATTGTCACGATACAGAAAATTACAAGACTGATTCAGTTCCAGTGGAAAAAGAAATGTTAGATCATCATATTTGA 2223 43.32 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQEVLLSSVYFLDDDGDDDDDDDEPPLIVQITYSGMSILAKAAFASGLSLLLQALTFVVAIAVETNLSQSKFVSLLFFTVQTVGTLFLLPPTIYFKRKEMACLSVGDLWKIFMQAILGFTLGLNAYGLGVKYTSATLGAAAFNCVPVTTFFFALISRMEKVNIRKASGMAKIGGIMLCIAGVAVLAFYKGPYFKPLFNFHLFQIHQSHVSSQKTWILGCFLLLVSSLSWGLWFVLQAWVLKTCPSPLLLTFGQTFSSAIQSFVVAIAIERNPSQWKLAWNIRLFAVLYCGIFAMCVANYLSSWVIKKKGPVFQAVSTPFNLIFTLIGSEFLLNDGVSLGSIIGGMLLVLSLYSVLWGKKKEMNCHDTENYKTDSVPVEKEMLDHHI 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29591689 29602497 + CaPI482276_01g016030.1 Cam01g1603 118685

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1603 740 FunFam Major actin 261 340 - -
Cam01g1603 740 Gene3D - 140 340 - -
Cam01g1603 740 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Cam01g1603 740 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cam01g1603 740 Gene3D Actin; Chain A, domain 4 182 273 - -
Cam01g1603 740 Pfam EamA-like transporter family 571 709 IPR000620 GO:0016020(InterPro)
Cam01g1603 740 Pfam EamA-like transporter family 402 538 IPR000620 GO:0016020(InterPro)
Cam01g1603 740 SUPERFAMILY Multidrug resistance efflux transporter EmrE 436 543 - -
Cam01g1603 740 FunFam Actin, alpha skeletal muscle 3 160 - -
Cam01g1603 740 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cam01g1603 740 SUPERFAMILY Multidrug resistance efflux transporter EmrE 631 714 - -
Cam01g1603 740 Gene3D - 10 360 - -
Cam01g1603 740 SMART actin_3 7 365 IPR004000 -
Cam01g1603 740 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cam01g1603 740 PRINTS Actin signature 51 62 IPR004000 -
Cam01g1603 740 PRINTS Actin signature 117 130 IPR004000 -
Cam01g1603 740 PRINTS Actin signature 142 161 IPR004000 -
Cam01g1603 740 PRINTS Actin signature 63 85 IPR004000 -
Cam01g1603 740 PRINTS Actin signature 238 254 IPR004000 -
Cam01g1603 740 PRINTS Actin signature 28 37 IPR004000 -
Cam01g1603 740 FunFam Actin, muscle 182 273 - -
Cam01g1603 740 Pfam Actin 5 359 IPR004000 -
Cam01g1603 740 SUPERFAMILY Actin-like ATPase domain 149 359 IPR043129 -
Cam01g1603 740 PANTHER ACTIN 8 357 IPR004000 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1603 K10355 - - csv:101220617 711.835
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1603 Cam-Chr1:29591689 Cam10g1718 Cam-Chr10:31211794 3.80E-202 dispersed
Cam01g1603 Cam-Chr1:29591689 Cam01g1606 Cam-Chr1:29623737 9.60E-105 proximal
Cam01g1603 Cam-Chr1:29591689 Cam02g0073 Cam-Chr2:1837829 1.30E-194 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam04g0905 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 7.5e-215 743.0
Cam10g1718 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 7.5e-215 743.0
Cam02g2090 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 3.7e-214 740.7
Cam07g0320 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.9e-213 738.4
Cam09g2020 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.2e-212 735.7
Cam09g1383 . 12 388 Cytoskeleton Gene Families AT2G37620 94.7 2.1e-212 734.9
Cam02g0073 . 1 360 Cytoskeleton Gene Families AT2G37620 95.6 3.9e-203 704.1
Cam01g1603 . 1 356 Cytoskeleton Gene Families AT2G37620 95.8 5.2e-200 693.7
Cam09g2020 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 2.2e-214 741.5
Cam02g2090 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 4.9e-214 740.3
Cam10g1718 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 6.4e-214 740.0
Cam07g0320 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 1.4e-213 738.8
Cam04g0905 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 7.1e-213 736.5
Cam09g1383 . 12 388 Cytoskeleton Gene Families AT5G59370 93.9 8.6e-211 729.6
Cam02g0073 . 1 360 Cytoskeleton Gene Families AT5G59370 94.4 5.2e-200 693.7
Cam01g1603 . 1 356 Cytoskeleton Gene Families AT5G59370 94.7 7.1e-197 683.3
Cam09g2020 . 1 377 Cytoskeleton Gene Families AT3G46520 97.3 9.8e-215 742.7
Cam10g1718 . 1 377 Cytoskeleton Gene Families AT3G46520 97.3 2.9e-214 741.1
Cam07g0320 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 6.4e-214 740.0
Cam02g2090 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 1.4e-213 738.8
Cam04g0905 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 3.2e-213 737.6
Cam09g1383 . 12 388 Cytoskeleton Gene Families AT3G46520 94.2 3.9e-211 730.7
Cam02g0073 . 1 360 Cytoskeleton Gene Families AT3G46520 94.7 2.4e-200 694.9
Cam01g1603 . 1 356 Cytoskeleton Gene Families AT3G46520 94.9 3.2e-197 684.5
Cam10g1718 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 3.4e-215 744.2
Cam07g0320 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 4.4e-215 743.8
Cam02g2090 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 1.7e-214 741.9
Cam04g0905 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 3.7e-214 740.7
Cam09g2020 . 1 377 Cytoskeleton Gene Families AT3G12110 96.3 1.9e-213 738.4
Cam09g1383 . 12 388 Cytoskeleton Gene Families AT3G12110 95.0 2.7e-212 734.6
Cam02g0073 . 1 360 Cytoskeleton Gene Families AT3G12110 95.6 1.5e-202 702.2
Cam01g1603 . 1 356 Cytoskeleton Gene Families AT3G12110 95.8 2.0e-199 691.8
Cam09g2020 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 2.8e-209 724.5
Cam04g0905 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 1.8e-208 721.8
Cam10g1718 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 1.8e-208 721.8
Cam07g0320 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.3e-208 721.5
Cam02g2090 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 8.9e-208 719.5
Cam09g1383 . 12 388 Cytoskeleton Gene Families AT3G18780 92.0 1.2e-207 719.2
Cam02g0073 . 1 360 Cytoskeleton Gene Families AT3G18780 93.6 2.0e-199 691.8
Cam01g1603 . 1 356 Cytoskeleton Gene Families AT3G18780 93.5 4.6e-196 680.6
Cam09g2020 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 9.5e-210 726.1
Cam10g1718 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 6.2e-209 723.4
Cam07g0320 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 8.1e-209 723.0
Cam04g0905 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 4.0e-208 720.7
Cam09g1383 . 12 388 Cytoskeleton Gene Families AT1G49240 92.3 4.0e-208 720.7
Cam02g2090 . 1 377 Cytoskeleton Gene Families AT1G49240 91.8 2.0e-207 718.4
Cam02g0073 . 1 360 Cytoskeleton Gene Families AT1G49240 93.6 2.0e-199 691.8
Cam01g1603 . 1 356 Cytoskeleton Gene Families AT1G49240 93.8 1.6e-196 682.2
Cam09g1383 . 12 388 Cytoskeleton Gene Families AT5G09810 95.8 2.9e-214 741.1
Cam10g1718 . 1 377 Cytoskeleton Gene Families AT5G09810 96.6 6.4e-214 740.0
Cam04g0905 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 1.9e-213 738.4
Cam02g2090 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.2e-213 737.6
Cam07g0320 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.2e-213 737.6
Cam09g2020 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 3.5e-212 734.2
Cam02g0073 . 1 360 Cytoskeleton Gene Families AT5G09810 98.6 1.3e-206 715.7
Cam01g1603 . 1 356 Cytoskeleton Gene Families AT5G09810 98.6 3.0e-203 704.5
Cam11g0212 . 1 133 Cytoskeleton Gene Families AT2G19760 76.7 8.6e-57 216.5
Cam09g0024 . 1 131 Cytoskeleton Gene Families AT2G19760 72.5 3.6e-55 211.1
Cam07g1227 . 532 662 Cytoskeleton Gene Families AT2G19760 73.3 1.8e-54 208.8
Cam11g0213 . 1 128 Cytoskeleton Gene Families AT2G19760 72.1 8.6e-49 189.9
Cam11g1523 . 1 98 Cytoskeleton Gene Families AT2G19760 73.5 8.1e-39 156.8
Cam11g0212 . 1 133 Cytoskeleton Gene Families AT4G29350 76.7 1.5e-56 215.7
Cam09g0024 . 1 131 Cytoskeleton Gene Families AT4G29350 73.3 1.4e-54 209.1
Cam07g1227 . 532 662 Cytoskeleton Gene Families AT4G29350 71.8 2.0e-53 205.3
Cam11g0213 . 1 128 Cytoskeleton Gene Families AT4G29350 72.1 9.5e-48 186.4
Cam11g0213 . 1 87 Cytoskeleton Gene Families AT5G56600 78.2 5.6e-38 153.7
Cam11g0212 . 1 133 Cytoskeleton Gene Families AT4G29340 84.3 1.5e-64 242.3
Cam09g0024 . 1 131 Cytoskeleton Gene Families AT4G29340 73.9 3.0e-57 218.0
Cam07g1227 . 532 662 Cytoskeleton Gene Families AT4G29340 67.9 5.0e-52 200.7
Cam11g0213 . 1 130 Cytoskeleton Gene Families AT4G29340 61.2 4.2e-43 171.0
Cam11g1523 . 1 97 Cytoskeleton Gene Families AT4G29340 72.0 7.0e-38 153.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276