Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1606 ATGAGTCTTCTTTCCAAAGCAGCCTTTGCTTCTGGCATGAATACCTTTGTCTTTGTCTTCTACAGACAAGCTGCTGGAGCTGTTTTTTTCCTTCCTCTTATGTTCTTCTTGAAAAGAAAAGACAGCCCATCTCTTTCTCTTAAAGATTTCTTCAAGATTTTCGCGATTTCGCTAATAGGGATGACTGTTGGATTTAATGCCTATGGTGTGGCTGTTGATTATACATCTGCAAATTTGGGTGCTGCTGCATTTAATTGCCTCCCTGTCACAACATTTCTCTTTGCTGTTTTATTAAGGATGGAGAAAGTAAACTTGAGAACAGTGGCTGGAATGGCAAAGGGTTTTGGAATATTAGTTTGCATTGGAGGAGTGATCACACTTGCATTCTACAAAGGTCCTTATTTGAAGCCACTCATCAACCATCACCTTTTGAAATTTAACAACTCCCATGCCCATCAAACTCATTCCTATTCTTCTAAAACTTGGATTATTGGTTGCTTTCTTCTCTTCGTCTCCAGTATCTCTTGGGGTTTATGGTTTGTTCTCCAGGCTCATTTTCTCAAGACTTATCCATCACCATTGGAGTTTGTAAGTTACCAAACACTCTTGAGCACAATCCAATCTTTTGTGATAGCTATTGCAATGGAAAGAGATCCTTCCGAGTGGAAGTTGGGTTGGAACATTAGGCTTCTTGCGGTTCTTTACTGTGGAGTTCTTGTAACTGTTGTTTCAAATATATTACAATGTTGGGTAATCAAAGAGAAGGGGCCAGTTTTTCAAGCCATGACAACGCCATTGAATGTGATTGCTACTATTATTGGCTCTGAATTGCTATTGGGTGAAGGAATCAACTTGGGAAGTCTCATTGGTGCAATTTTGTTGGTGCTTAGCCTTTACAGTGTATTATGGGGGAAAAGCAAAGAGCTAAGCATTATTGATAGAGATAATAATAATCAAACAGATGTATTTGTTCCACCTCAGTTACCAAAAGATTTGACAGAAATGAGATCACCTGCTGAGCCATAG 1026 39.18 MSLLSKAAFASGMNTFVFVFYRQAAGAVFFLPLMFFLKRKDSPSLSLKDFFKIFAISLIGMTVGFNAYGVAVDYTSANLGAAAFNCLPVTTFLFAVLLRMEKVNLRTVAGMAKGFGILVCIGGVITLAFYKGPYLKPLINHHLLKFNNSHAHQTHSYSSKTWIIGCFLLFVSSISWGLWFVLQAHFLKTYPSPLEFVSYQTLLSTIQSFVIAIAMERDPSEWKLGWNIRLLAVLYCGVLVTVVSNILQCWVIKEKGPVFQAMTTPLNVIATIIGSELLLGEGINLGSLIGAILLVLSLYSVLWGKSKELSIIDRDNNNQTDVFVPPQLPKDLTEMRSPAEP 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 29623737 29627920 - CaPI482276_01g016060.1 Cam01g1606 118688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1606 341 SUPERFAMILY Multidrug resistance efflux transporter EmrE 21 128 - -
Cam01g1606 341 Pfam EamA-like transporter family 10 120 IPR000620 GO:0016020(InterPro)
Cam01g1606 341 Pfam EamA-like transporter family 164 302 IPR000620 GO:0016020(InterPro)
Cam01g1606 341 SUPERFAMILY Multidrug resistance efflux transporter EmrE 203 306 - -
Cam01g1606 341 PANTHER WAT1-RELATED PROTEIN 1 314 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1606 Cam-Chr1:29623737 Cam01g1609 Cam-Chr1:29659607 6.10E-115 dispersed
Cam01g1603 Cam-Chr1:29591689 Cam01g1606 Cam-Chr1:29623737 9.60E-105 proximal
Cam01g1606 Cam-Chr1:29623737 Cam01g1607 Cam-Chr1:29637568 8.60E-117 tandem
Cam08g1139 Cam-Chr8:17730145 Cam01g1606 Cam-Chr1:29623737 2.10E-65 transposed
Cam01g1606 Cam-Chr1:29623737 Cam02g0078 Cam-Chr2:1882613 2.00E-49 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1606 - - - 0.0