Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1661 ATGGCGAATGAGTTTGGTGAATCAACAAGTGTGCCACATCAAAACCCATCTTGGTCTGCTAATAGTGAATCTACTAACAATGATACTGGTGATTTTGAATGCAATATTTGCTTTGAGTTAGCTCAAGACCCAATTATTACTCTTTGTGGTCATCTCTTTTGCTGGCCTTGTTTATATAGATGGCTGCATCATCACTCACAATGTCAAGAATGCCCTGTTTGTAAGGCTCTTATTCAGGAGGAAAAATTGGTTCCTCTTTATGGTAGGGGTAAAATTCCATCTGATCCAAGATTAAATAGATATCCTGGTATTGATATTCCAAGTCGTCCTGCTGGGCAAAGACCTCAAACAGCACCACTCCCTGTTCCTAATGACTTTGCAAATTATGGTTTTGGGTTCACTGGTGGCTTTATGCCAATGGCAACAGCAAGGATTGGCAATTTCACTTTAGCTACTGCTTTTGGTGGTTTGATCCCATCTTTATTCAACATCCAGTTTCATGGATTTCCTGATGCTACTGTTTATGGAACTACTTCTGCTTACCCTTATGCATTCAACGCCTTTCATGGAGGTCATGGTCACCATTTTCCGCAACCGTCGACTCGAGGTCAGCATGCTGATAATGTACTGAAAAACCTCCTTTTACTCGTTGGTGTCTTTGTAATTCTTGCCTTGCTCTGGTGGTAA 687 41.19 MANEFGESTSVPHQNPSWSANSESTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYRWLHHHSQCQECPVCKALIQEEKLVPLYGRGKIPSDPRLNRYPGIDIPSRPAGQRPQTAPLPVPNDFANYGFGFTGGFMPMATARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSAYPYAFNAFHGGHGHHFPQPSTRGQHADNVLKNLLLLVGVFVILALLWW 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30196693 30197379 + CaPI482276_01g016610.1 Cam01g1661 118743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1661 228 SUPERFAMILY RING/U-box 30 87 - -
Cam01g1661 228 CDD RING-HC_AtRMA-like 32 76 - -
Cam01g1661 228 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Cam01g1661 228 SMART ring_2 34 74 IPR001841 -
Cam01g1661 228 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 16 88 - -
Cam01g1661 228 ProSiteProfiles Zinc finger RING-type profile. 34 75 IPR001841 -
Cam01g1661 228 Pfam Zinc finger, C3HC4 type (RING finger) 33 74 - -
Cam01g1661 228 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 12 220 IPR045103 GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:0071712(PANTHER)
Cam01g1661 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 88 IPR013083 -
Cam01g1661 228 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1661 Cam-Chr1:30196693 Cam10g1724 Cam-Chr10:31274480 3.30E-24 dispersed
Cam01g1661 Cam-Chr1:30196693 Cam08g2009 Cam-Chr8:25826885 3.20E-75 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1661 K10666 - csv:101205026 442.195