Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1666 ATGGGAATCGCTAAAGGTCCATTAATTTTGTCCAATAAGGCAACTAGTTGTGCCAATTCTTCTATGTCCCACGATTATCATCATCATCATCATCAAGGAATCTTCACCTTCCCTAATGGCACCTTGGATAAATCCAATTCCTCCACCCTCCCTCAACACATCCGCCCTGAGAAGCTCCGACTCGACGCCTTCTCCGCCCCGATTCCGCCATCTACGGTGGCCGAACTAGACGAACACCACCCCCACCACCATCACCAGCAACAACTTCATCATGTCTATGCCACCACACCTAGTGGGGGGACCATGTTATCCGACATGTTCAATTTCCCTCCAACAACTCCCTCCGCCCCCGTTCCCGTCGAATTCTCCGACAATTTCCGAACTTTACGCCCTCCCAACTCGGCCTCCGCCATGCAACTTTTCTTGATGAACCCTCCTCCACCACCACAACCCCAACCGCGATCTCCATCGCCACCTTCTACCTCCTCCACTCTCCACATGCTCCTCCCGAACCCACCTGCGAACGCTCTTCAGGGTTTCGAAGGTGGGGTTGGTGTCGGAGATCAAACGGCTTTCGGTCAATTCGCTGTCGTCGAAAGTCAAGGTCTTTCACTCTCACTTCACTCTTCCTCTTTACAACACTTGGAGGACGCGGCCGCTGCTGCTGCCGCCGTCGCGAAAGCAGATGAATTGAGAATTAGGGATGGTGGGATTTTGTATAATTATAACAACAACAACAATCAAGTCCTTGATGGAGGCGATGGAGGAAGTGGATCAACATCATCAATTTTGCACTATTCTTTTAGAAATAATGAGAATTCTCCTCATAGCTTTCAAGCTCCACAAATAATGAATCCCAACCATCAAGTTCAAATTGGATTTGGGTCATCTTTAGGAGTTGTAAATGTGTTGAGGAATTCAAAATATGCCAAACCTGCACAAGAATTGCTCGAGGAGTTTTGTAGTGTTGGCAAAGTTCAATTGAAGAAAAACAAGTTCAATATTAAGCCAAACCCCGATACCGAAACCGCCACCACCTCTGCCGCTGCTACCGGTGGCTCGACATCAAAGGATCAACCTCCCTTATCAGCTGCTGACAGAATTGAGCATCAACGGAGAAAGGTCAAACTATTGTCCATGCTTGATGAGGTCGAACGTAGGTACAACCTATATCGAGAGCAAATGCAAATGGTAGTGAACTCGTTCGACCTAGTCATGGGGTTCGGAGCAGCAGCGCCTTACACAACGTTGACGCAGAAGGCGATGTCGAGGCACTTTCGGTGCTTGAAAGACGCGATTGCCGAGCAGCTAAAGCAGAGCTACGAAGCGTTGGGGGAGAAAGGAGGGAATGGAGGGTCAGGAATAACAAAAGGAGAGACACCAAGATTGAAGCTTCTTGAACAAAGCCTTCGCCAACAAAGGGCTTTCCATCAAATGGGAATGATGGAACAAGAAGCTTGGAGGCCACAGCGTGGCCTTCCTGAAAGATCAGTCAACATTCTCAGGGCTTGGCTTTTCGAGCATTTTCTTCACCCGTACCCCAGCGACGCAGACAAGCTTCTGTTAGCTCGACAGACTGGTTTGTCCAGAAATCAGGTCTCGAATTGGTTCATTAATGCAAGAGTTCGGTTGTGGAAACCGATGGTGGAAGAAATGTACCAACTTGAAGGGAAAGTGGATACAGATGAATCACAAGATGACACCACACACAATAATAATAATAATAAAACCCAAAACAATCCCATAAATAATTCACAAAATCCAACACCCACCACTGCTCCACCACCCTCAGCCAGCACCGTGGAAGAAGTAGCGGCGGAGTTCACGGCGGCGCATGAGTACTCAGATCTTCATGATGTGTGGCGACATGGAAGTAGTGGAGATCATCAACAACATTATGGGACCATGTCTGAAGATGTTACAACTGCGGCGGCTGACATGCATCCTGGACCAACACTTATAAGATTTGGGACCACAAATACGGCCACCGGTGACGTGTCCCTAACTTTAGGCCTCCGCCACACCGGAAATACCTCCGCCGCCGCCGCCGCAGATAACCCTTCTTTCTCCCTAAGAGACTTTGGTCACTCTTGA 2094 48.71 MGIAKGPLILSNKATSCANSSMSHDYHHHHHQGIFTFPNGTLDKSNSSTLPQHIRPEKLRLDAFSAPIPPSTVAELDEHHPHHHHQQQLHHVYATTPSGGTMLSDMFNFPPTTPSAPVPVEFSDNFRTLRPPNSASAMQLFLMNPPPPPQPQPRSPSPPSTSSTLHMLLPNPPANALQGFEGGVGVGDQTAFGQFAVVESQGLSLSLHSSSLQHLEDAAAAAAAVAKADELRIRDGGILYNYNNNNNQVLDGGDGGSGSTSSILHYSFRNNENSPHSFQAPQIMNPNHQVQIGFGSSLGVVNVLRNSKYAKPAQELLEEFCSVGKVQLKKNKFNIKPNPDTETATTSAAATGGSTSKDQPPLSAADRIEHQRRKVKLLSMLDEVERRYNLYREQMQMVVNSFDLVMGFGAAAPYTTLTQKAMSRHFRCLKDAIAEQLKQSYEALGEKGGNGGSGITKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKLLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQLEGKVDTDESQDDTTHNNNNNKTQNNPINNSQNPTPTTAPPPSASTVEEVAAEFTAAHEYSDLHDVWRHGSSGDHQQHYGTMSEDVTTAAADMHPGPTLIRFGTTNTATGDVSLTLGLRHTGNTSAAAAADNPSFSLRDFGHS 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30258509 30263410 + CaPI482276_01g016660.1 Cam01g1666 118748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1666 697 Pfam Homeobox KN domain 504 543 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cam01g1666 697 MobiDBLite consensus disorder prediction 140 166 - -
Cam01g1666 697 SUPERFAMILY Homeodomain-like 488 555 IPR009057 -
Cam01g1666 697 Pfam Associated with HOX 303 434 IPR006563 -
Cam01g1666 697 Gene3D - 490 552 - -
Cam01g1666 697 ProSiteProfiles 'Homeobox' domain profile. 484 547 IPR001356 GO:0003677(InterPro)
Cam01g1666 697 MobiDBLite consensus disorder prediction 337 361 - -
Cam01g1666 697 CDD homeodomain 487 548 IPR001356 GO:0003677(InterPro)
Cam01g1666 697 SMART HOX_1 487 551 IPR001356 GO:0003677(InterPro)
Cam01g1666 697 MobiDBLite consensus disorder prediction 559 602 - -
Cam01g1666 697 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 226 581 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cam01g1666 697 SMART prehox3 298 435 IPR006563 -
Cam01g1666 697 FunFam BEL1-like homeodomain protein 4 490 552 - -
Cam01g1666 697 MobiDBLite consensus disorder prediction 142 158 - -
Cam01g1666 697 Coils Coil 374 401 - -
Cam01g1666 697 MobiDBLite consensus disorder prediction 333 366 - -
Cam01g1666 697 MobiDBLite consensus disorder prediction 570 587 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1666 Cam-Chr1:30258509 Cam02g1346 Cam-Chr2:26108584 5.80E-128 dispersed
Cam01g1666 Cam-Chr1:30258509 Cam02g2320 Cam-Chr2:35734900 1.00E-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51285 PF07526 POX 1.30E-48 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1666 - - - 0.0