Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam01g1708 | ATGCGTTGGTTGCGTAACATCTCCTTTACCCCTTCTTCAATGGTGAGAATTCCGGGAACTGGCACAGGTGGTGATTCTCCAACCAGAAGGACTACTACCAGAGGCTCCGACGATCATAATTATCGGGGAATTGTTTGGCGTTTTGGTGCCTCTAAGTATTCCCGCCATAGGAAGCTTCGGAACCTAAGCGGACGTGAACGCGACGCTACTTCTTTGGCTAAATGGTCCGATACTACGCCTGAGCCTGTCTCTTTGTCGCGATCGCCGAGTACTTCTGATGACCATGCCGTCCCCTTGCCGCTCCCGGAGGTTTCTCCCTTATTTCAGCGTCGTGAAGGAATCTCCAATTTGAATTCTGCAGGTGGAGATGGGGATTGCCCTCTTCCATCGCCCAAGGGTTGGCGTGGACGCGGTGGGGACGATCGCGATGTAGATAGAGATAGAACTACACCTCCTCATAAGATTGGGGGTGCGGCCTCCCCTACCGCTCCGATTAAAAGTATATCTGATTCCGGGGAAAAGCAGAAGAAAGAAGATCAGAATGAGACGAGGTCATCTGGGAGGGCGAATCAAGATGCAAGAGGATATCCTGAAAGTTCCCGGAACGGTTTTTGGATTGATGTTCCCAGTAGGAGTGCTCCTACTAGTCCTTATGCAAGTCCTACACTCAGTCCCCAAAGAAATAGGTCCGGTAACCTTTCAAATTTCTATCATGTGATTCCAGTAGGAAACCAAGGCTGGTCTTCACCTGAGCTACCAAGTTTCCCTTATGCTGCTCCAGTTGGAAATCACGTCTGGTCTGCACCTGAGCTGCCATCCTCAGCAATGATGCGGGGGGTTCCTCCTGCATTCTTTGATTGCTCCACTCTTAGTTCTGAGAGTTCTCCCATGCATAGCCCAAGAGGTAGAAGTCCCCACCGAGATCCCAGAAGTCCAACAGGAGCTACGTCTCCATTGCACACCAAGATTTCCCTTGAAACACATGCTGTGCGCCGTGAAGGTTCTGGTCATGTCAGTGTCCACCCTTTACCTCTTCCCCCTGGAGTGCCAATGCCTTCAGCATCAATCCCATCAATGGCTTCACCATCAACCTCCATGCCTCTACAATCAACCCCTGTGCCTTCCCCATCAATTCCAATGCCTTCAGCATCATCCCCAATGGCTTCACCATCAACCCCAATGGCTTCACAATCAACCCCAATTACACAAGCTAACACCAAAACTGAGTCGACCTCAATGAAAAATAAATGGCAGAAAGGAAAGCTTATAGGCCGGGGCACATTCGGAAGTGTATATGTTGCTAGCAACAGAGAAAATGGAGCTTTATGTGCAATGAAGGAAGTTGAACTATTTCATGACGATCCGAAGTCAGCTGAATCTATAAAGCAATTAGAACAGGAGATCAAACTTCTGAGCCAGCTAAAGCATCCAAATATTGTCCAGTACTATGGTTGTGATAGTGTTGAAGATCGATTATATATATACCTGGAGTATGTTCATCCTGGTTCAATTAATAAATATGTTCGTGAACATTGTGGAGCCATGACAGAATCTGTTGTTCGAAATTTTACTTGGCACATTCTCTCAGGGTTGGCCTACTTGCACAGCACAAAGACTATACACCGGGACATTAAAGGTGCTAATTTGCTGGTAGACTCTTGTGGGGTTGTCAAGCTTGCTGACTTTGGAATGGCTAAACATCTTACAGGACAAGTTGCTGATCTCTCTCTAAAGGGAAGTCCATACTGGATGGCTCCTGAGCTACTTCTGTCTGTGATGCAGAAAGATAACAGCCCAGATCTTGCCCTAGCAGTTGATATTTGGAGCCTTGGTTGCACTATTATAGAAATGTTCACTGGCAAACCACCTTGGAGTGAGTATGAAGGGGCTGCAGCTATGTTTAAGGTCATAAGAGATACCCCACCAATACCTGAAACCTTATCATATGAAGCCAGCGATTTCTTAAAATGCTGCTTTCAGAGAAATCCTGCAGAGAGACCGACCGCTGCAATGCTGCTTGAACATCCATTCATGAAAAACTTGCAGCATCCAGATGCTTCATCTTGCTCTCAGGCCGTTGCTGGGGCAAGTTTGATGGATAAATGCTATAGCCCAAGTAAACAATATTCAAGTAAATTTGATCAGTCTTCCATGCTTCCAAGCTCACAAAACTCCAAGGGAAAGTTAGCGGCCGAGAGTGTGATTGGCCCACCATCTCGTCATGAAACCTCTGACTTAACAGTAATGTCTCGTTATTCCCCCCGTTCTACCCTTGAGGCTCTTCCAATACTGTCTCCTCCGCGCTCGGTTCCCAATGTGCACCATCTCGGTTCCCCTACAAATGTGGCTGGTGTTGGTGGTAAAGTATCGGCGAAAGCTCAGCTTCATGACAAGAAGCCAGACTCAGATGCTGCGTCTAGTAGAGCTTCAGTAATGGCGACATCCACTGATCCTTCCTTGGTGTTGGCGTGGGAAAATCACCACTTCCATAGTTCAATGTACAACTTCAAACTGAATTTGTAG | 2523 | 47.25 | MRWLRNISFTPSSMVRIPGTGTGGDSPTRRTTTRGSDDHNYRGIVWRFGASKYSRHRKLRNLSGRERDATSLAKWSDTTPEPVSLSRSPSTSDDHAVPLPLPEVSPLFQRREGISNLNSAGGDGDCPLPSPKGWRGRGGDDRDVDRDRTTPPHKIGGAASPTAPIKSISDSGEKQKKEDQNETRSSGRANQDARGYPESSRNGFWIDVPSRSAPTSPYASPTLSPQRNRSGNLSNFYHVIPVGNQGWSSPELPSFPYAAPVGNHVWSAPELPSSAMMRGVPPAFFDCSTLSSESSPMHSPRGRSPHRDPRSPTGATSPLHTKISLETHAVRREGSGHVSVHPLPLPPGVPMPSASIPSMASPSTSMPLQSTPVPSPSIPMPSASSPMASPSTPMASQSTPITQANTKTESTSMKNKWQKGKLIGRGTFGSVYVASNRENGALCAMKEVELFHDDPKSAESIKQLEQEIKLLSQLKHPNIVQYYGCDSVEDRLYIYLEYVHPGSINKYVREHCGAMTESVVRNFTWHILSGLAYLHSTKTIHRDIKGANLLVDSCGVVKLADFGMAKHLTGQVADLSLKGSPYWMAPELLLSVMQKDNSPDLALAVDIWSLGCTIIEMFTGKPPWSEYEGAAAMFKVIRDTPPIPETLSYEASDFLKCCFQRNPAERPTAAMLLEHPFMKNLQHPDASSCSQAVAGASLMDKCYSPSKQYSSKFDQSSMLPSSQNSKGKLAAESVIGPPSRHETSDLTVMSRYSPRSTLEALPILSPPRSVPNVHHLGSPTNVAGVGGKVSAKAQLHDKKPDSDAASSRASVMATSTDPSLVLAWENHHFHSSMYNFKLNL | 840 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 30668315 | 30674269 | + | CaPI482276_01g017080.1 | Cam01g1708 | 118790 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam01g1708 | 840 | FunFam | Mitogen-activated protein kinase kinase kinase 5 | 414 | 715 | - | - | |
Cam01g1708 | 840 | MobiDBLite | consensus disorder prediction | 13 | 39 | - | - | |
Cam01g1708 | 840 | Pfam | Protein kinase domain | 418 | 678 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cam01g1708 | 840 | MobiDBLite | consensus disorder prediction | 384 | 416 | - | - | |
Cam01g1708 | 840 | SUPERFAMILY | Protein kinase-like (PK-like) | 401 | 722 | IPR011009 | - | |
Cam01g1708 | 840 | ProSiteProfiles | Protein kinase domain profile. | 417 | 678 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cam01g1708 | 840 | MobiDBLite | consensus disorder prediction | 290 | 416 | - | - | |
Cam01g1708 | 840 | MobiDBLite | consensus disorder prediction | 213 | 229 | - | - | |
Cam01g1708 | 840 | MobiDBLite | consensus disorder prediction | 135 | 152 | - | - | |
Cam01g1708 | 840 | ProSitePatterns | Protein kinases ATP-binding region signature. | 423 | 446 | IPR017441 | GO:0005524(InterPro) | |
Cam01g1708 | 840 | MobiDBLite | consensus disorder prediction | 790 | 810 | - | - | |
Cam01g1708 | 840 | MobiDBLite | consensus disorder prediction | 170 | 185 | - | - | |
Cam01g1708 | 840 | Gene3D | Transferase(Phosphotransferase) domain 1 | 413 | 717 | - | - | |
Cam01g1708 | 840 | SMART | serkin_6 | 417 | 678 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cam01g1708 | 840 | MobiDBLite | consensus disorder prediction | 13 | 30 | - | - | |
Cam01g1708 | 840 | MobiDBLite | consensus disorder prediction | 356 | 371 | - | - | |
Cam01g1708 | 840 | PANTHER | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED | 179 | 684 | IPR050538 | - | |
Cam01g1708 | 840 | MobiDBLite | consensus disorder prediction | 73 | 93 | - | - | |
Cam01g1708 | 840 | MobiDBLite | consensus disorder prediction | 64 | 229 | - | - | |
Cam01g1708 | 840 | MobiDBLite | consensus disorder prediction | 710 | 729 | - | - | |
Cam01g1708 | 840 | MobiDBLite | consensus disorder prediction | 710 | 744 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam01g1708 | Cam-Chr1:30668315 | Cam06g0599 | Cam-Chr6:8128047 | 2.10E-63 | dispersed | |
Cam01g0469 | Cam-Chr1:5010976 | Cam01g1708 | Cam-Chr1:30668315 | 6.70E-97 | transposed | |
Cam01g1580 | Cam-Chr1:29279225 | Cam01g1708 | Cam-Chr1:30668315 | 8.70E-88 | transposed | |
Cam03g0931 | Cam-Chr3:12289869 | Cam01g1708 | Cam-Chr1:30668315 | 2.50E-57 | transposed | |
Cam05g0978 | Cam-Chr5:8845141 | Cam01g1708 | Cam-Chr1:30668315 | 4.10E-94 | transposed | |
Cam01g1708 | Cam-Chr1:30668315 | Cam08g2031 | Cam-Chr8:25951119 | 5.50E-141 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
84887 | PF00069 | Pkinase | 2.60E-68 | CL0016 | Cam | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam01g1708 | - | - | - | 0.0 |