Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1708 ATGCGTTGGTTGCGTAACATCTCCTTTACCCCTTCTTCAATGGTGAGAATTCCGGGAACTGGCACAGGTGGTGATTCTCCAACCAGAAGGACTACTACCAGAGGCTCCGACGATCATAATTATCGGGGAATTGTTTGGCGTTTTGGTGCCTCTAAGTATTCCCGCCATAGGAAGCTTCGGAACCTAAGCGGACGTGAACGCGACGCTACTTCTTTGGCTAAATGGTCCGATACTACGCCTGAGCCTGTCTCTTTGTCGCGATCGCCGAGTACTTCTGATGACCATGCCGTCCCCTTGCCGCTCCCGGAGGTTTCTCCCTTATTTCAGCGTCGTGAAGGAATCTCCAATTTGAATTCTGCAGGTGGAGATGGGGATTGCCCTCTTCCATCGCCCAAGGGTTGGCGTGGACGCGGTGGGGACGATCGCGATGTAGATAGAGATAGAACTACACCTCCTCATAAGATTGGGGGTGCGGCCTCCCCTACCGCTCCGATTAAAAGTATATCTGATTCCGGGGAAAAGCAGAAGAAAGAAGATCAGAATGAGACGAGGTCATCTGGGAGGGCGAATCAAGATGCAAGAGGATATCCTGAAAGTTCCCGGAACGGTTTTTGGATTGATGTTCCCAGTAGGAGTGCTCCTACTAGTCCTTATGCAAGTCCTACACTCAGTCCCCAAAGAAATAGGTCCGGTAACCTTTCAAATTTCTATCATGTGATTCCAGTAGGAAACCAAGGCTGGTCTTCACCTGAGCTACCAAGTTTCCCTTATGCTGCTCCAGTTGGAAATCACGTCTGGTCTGCACCTGAGCTGCCATCCTCAGCAATGATGCGGGGGGTTCCTCCTGCATTCTTTGATTGCTCCACTCTTAGTTCTGAGAGTTCTCCCATGCATAGCCCAAGAGGTAGAAGTCCCCACCGAGATCCCAGAAGTCCAACAGGAGCTACGTCTCCATTGCACACCAAGATTTCCCTTGAAACACATGCTGTGCGCCGTGAAGGTTCTGGTCATGTCAGTGTCCACCCTTTACCTCTTCCCCCTGGAGTGCCAATGCCTTCAGCATCAATCCCATCAATGGCTTCACCATCAACCTCCATGCCTCTACAATCAACCCCTGTGCCTTCCCCATCAATTCCAATGCCTTCAGCATCATCCCCAATGGCTTCACCATCAACCCCAATGGCTTCACAATCAACCCCAATTACACAAGCTAACACCAAAACTGAGTCGACCTCAATGAAAAATAAATGGCAGAAAGGAAAGCTTATAGGCCGGGGCACATTCGGAAGTGTATATGTTGCTAGCAACAGAGAAAATGGAGCTTTATGTGCAATGAAGGAAGTTGAACTATTTCATGACGATCCGAAGTCAGCTGAATCTATAAAGCAATTAGAACAGGAGATCAAACTTCTGAGCCAGCTAAAGCATCCAAATATTGTCCAGTACTATGGTTGTGATAGTGTTGAAGATCGATTATATATATACCTGGAGTATGTTCATCCTGGTTCAATTAATAAATATGTTCGTGAACATTGTGGAGCCATGACAGAATCTGTTGTTCGAAATTTTACTTGGCACATTCTCTCAGGGTTGGCCTACTTGCACAGCACAAAGACTATACACCGGGACATTAAAGGTGCTAATTTGCTGGTAGACTCTTGTGGGGTTGTCAAGCTTGCTGACTTTGGAATGGCTAAACATCTTACAGGACAAGTTGCTGATCTCTCTCTAAAGGGAAGTCCATACTGGATGGCTCCTGAGCTACTTCTGTCTGTGATGCAGAAAGATAACAGCCCAGATCTTGCCCTAGCAGTTGATATTTGGAGCCTTGGTTGCACTATTATAGAAATGTTCACTGGCAAACCACCTTGGAGTGAGTATGAAGGGGCTGCAGCTATGTTTAAGGTCATAAGAGATACCCCACCAATACCTGAAACCTTATCATATGAAGCCAGCGATTTCTTAAAATGCTGCTTTCAGAGAAATCCTGCAGAGAGACCGACCGCTGCAATGCTGCTTGAACATCCATTCATGAAAAACTTGCAGCATCCAGATGCTTCATCTTGCTCTCAGGCCGTTGCTGGGGCAAGTTTGATGGATAAATGCTATAGCCCAAGTAAACAATATTCAAGTAAATTTGATCAGTCTTCCATGCTTCCAAGCTCACAAAACTCCAAGGGAAAGTTAGCGGCCGAGAGTGTGATTGGCCCACCATCTCGTCATGAAACCTCTGACTTAACAGTAATGTCTCGTTATTCCCCCCGTTCTACCCTTGAGGCTCTTCCAATACTGTCTCCTCCGCGCTCGGTTCCCAATGTGCACCATCTCGGTTCCCCTACAAATGTGGCTGGTGTTGGTGGTAAAGTATCGGCGAAAGCTCAGCTTCATGACAAGAAGCCAGACTCAGATGCTGCGTCTAGTAGAGCTTCAGTAATGGCGACATCCACTGATCCTTCCTTGGTGTTGGCGTGGGAAAATCACCACTTCCATAGTTCAATGTACAACTTCAAACTGAATTTGTAG 2523 47.25 MRWLRNISFTPSSMVRIPGTGTGGDSPTRRTTTRGSDDHNYRGIVWRFGASKYSRHRKLRNLSGRERDATSLAKWSDTTPEPVSLSRSPSTSDDHAVPLPLPEVSPLFQRREGISNLNSAGGDGDCPLPSPKGWRGRGGDDRDVDRDRTTPPHKIGGAASPTAPIKSISDSGEKQKKEDQNETRSSGRANQDARGYPESSRNGFWIDVPSRSAPTSPYASPTLSPQRNRSGNLSNFYHVIPVGNQGWSSPELPSFPYAAPVGNHVWSAPELPSSAMMRGVPPAFFDCSTLSSESSPMHSPRGRSPHRDPRSPTGATSPLHTKISLETHAVRREGSGHVSVHPLPLPPGVPMPSASIPSMASPSTSMPLQSTPVPSPSIPMPSASSPMASPSTPMASQSTPITQANTKTESTSMKNKWQKGKLIGRGTFGSVYVASNRENGALCAMKEVELFHDDPKSAESIKQLEQEIKLLSQLKHPNIVQYYGCDSVEDRLYIYLEYVHPGSINKYVREHCGAMTESVVRNFTWHILSGLAYLHSTKTIHRDIKGANLLVDSCGVVKLADFGMAKHLTGQVADLSLKGSPYWMAPELLLSVMQKDNSPDLALAVDIWSLGCTIIEMFTGKPPWSEYEGAAAMFKVIRDTPPIPETLSYEASDFLKCCFQRNPAERPTAAMLLEHPFMKNLQHPDASSCSQAVAGASLMDKCYSPSKQYSSKFDQSSMLPSSQNSKGKLAAESVIGPPSRHETSDLTVMSRYSPRSTLEALPILSPPRSVPNVHHLGSPTNVAGVGGKVSAKAQLHDKKPDSDAASSRASVMATSTDPSLVLAWENHHFHSSMYNFKLNL 840
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30668315 30674269 + CaPI482276_01g017080.1 Cam01g1708 118790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1708 840 FunFam Mitogen-activated protein kinase kinase kinase 5 414 715 - -
Cam01g1708 840 MobiDBLite consensus disorder prediction 13 39 - -
Cam01g1708 840 Pfam Protein kinase domain 418 678 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g1708 840 MobiDBLite consensus disorder prediction 384 416 - -
Cam01g1708 840 SUPERFAMILY Protein kinase-like (PK-like) 401 722 IPR011009 -
Cam01g1708 840 ProSiteProfiles Protein kinase domain profile. 417 678 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g1708 840 MobiDBLite consensus disorder prediction 290 416 - -
Cam01g1708 840 MobiDBLite consensus disorder prediction 213 229 - -
Cam01g1708 840 MobiDBLite consensus disorder prediction 135 152 - -
Cam01g1708 840 ProSitePatterns Protein kinases ATP-binding region signature. 423 446 IPR017441 GO:0005524(InterPro)
Cam01g1708 840 MobiDBLite consensus disorder prediction 790 810 - -
Cam01g1708 840 MobiDBLite consensus disorder prediction 170 185 - -
Cam01g1708 840 Gene3D Transferase(Phosphotransferase) domain 1 413 717 - -
Cam01g1708 840 SMART serkin_6 417 678 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g1708 840 MobiDBLite consensus disorder prediction 13 30 - -
Cam01g1708 840 MobiDBLite consensus disorder prediction 356 371 - -
Cam01g1708 840 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 179 684 IPR050538 -
Cam01g1708 840 MobiDBLite consensus disorder prediction 73 93 - -
Cam01g1708 840 MobiDBLite consensus disorder prediction 64 229 - -
Cam01g1708 840 MobiDBLite consensus disorder prediction 710 729 - -
Cam01g1708 840 MobiDBLite consensus disorder prediction 710 744 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1708 Cam-Chr1:30668315 Cam06g0599 Cam-Chr6:8128047 2.10E-63 dispersed
Cam01g0469 Cam-Chr1:5010976 Cam01g1708 Cam-Chr1:30668315 6.70E-97 transposed
Cam01g1580 Cam-Chr1:29279225 Cam01g1708 Cam-Chr1:30668315 8.70E-88 transposed
Cam03g0931 Cam-Chr3:12289869 Cam01g1708 Cam-Chr1:30668315 2.50E-57 transposed
Cam05g0978 Cam-Chr5:8845141 Cam01g1708 Cam-Chr1:30668315 4.10E-94 transposed
Cam01g1708 Cam-Chr1:30668315 Cam08g2031 Cam-Chr8:25951119 5.50E-141 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84887 PF00069 Pkinase 2.60E-68 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1708 - - - 0.0