Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1727 ATGGCGCACAGATCGCTCCCCGCACCCTTTCTCACCAAGACCTACCAGCTCGTCGACGATCCTTCCACCGACGACGTCGTTTCCTGGAATCAATCGGGCTCTACCTTCATCGTATGGAAAACCGCCGATTTCGCCAGAGATTTGCTACCCAATTACTTCAAACACAACAATTTCTCTAGCTTCGTCCGTCAGCTTAATACTTACGGGTTTCGCAAGATCGTACCGGACAAATGGGAATTCGCTAACGACAATTTCCAACGGGGCCACAAGGAGCTCCTCTCCAAAATCCGCCGCCGAAAGGCGGTCATGATATCCCAACCCTTGCAAACGGTTCATCCTGCTAAATCCGGCGGCGGTGGCAACTCCTCGCCGGCGAACTCCGGCGAGGACATCGGATCGACTTCGACCTCCTCACCGGATTCCAAGAATCCGGGATCCGTGGAGATGGGAACGGTCGCACAATTCGCCGATCTGACTGAGGAGAACGAGAAATTAAAGAAGGATAACGAGATGTTGAACTCGGAGCTTGTACAGACGAAGAAGCAGTGTGACGAGCTCGTAGTTTTTCTGACGGACTACTTGAAGGTAGCGCCGGATCAGATCAGCCGTATCATGAGACAAGAGGGGAACAACCGCGATTCCAGTCAATGTAACGACGGCGCTGATCTGAAAAGCGAGGGCAAGGTGAACGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGATGGCGAAACTCTGAAATTGTTTGGGGTTTGGTTGAAGGGGAAAAAGGAGAAGAAGATGAAAAGGGGTCGAGATGAGAAAATGGGGTGCAGCAAAGCACCACATGCGAAAGCAATGAAGTCGGTTGAGATGCACGCGCCGTTGATGAGGAGCAGCAATCTGTGCAACTGA 894 51.45 MAHRSLPAPFLTKTYQLVDDPSTDDVVSWNQSGSTFIVWKTADFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANDNFQRGHKELLSKIRRRKAVMISQPLQTVHPAKSGGGGNSSPANSGEDIGSTSTSSPDSKNPGSVEMGTVAQFADLTEENEKLKKDNEMLNSELVQTKKQCDELVVFLTDYLKVAPDQISRIMRQEGNNRDSSQCNDGADLKSEGKVNEEEEEEEEEEEDGETLKLFGVWLKGKKEKKMKRGRDEKMGCSKAPHAKAMKSVEMHAPLMRSSNLCN 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30851387 30852987 - CaPI482276_01g017270.1 Cam01g1727 118809

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1727 297 MobiDBLite consensus disorder prediction 205 244 - -
Cam01g1727 297 MobiDBLite consensus disorder prediction 109 148 - -
Cam01g1727 297 FunFam Heat stress transcription factor B-4 2 100 - -
Cam01g1727 297 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam01g1727 297 MobiDBLite consensus disorder prediction 260 274 - -
Cam01g1727 297 SUPERFAMILY Winged helix DNA-binding domain 7 99 IPR036390 -
Cam01g1727 297 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 199 IPR027725 GO:0000978(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cam01g1727 297 SMART hsfneu3 6 99 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam01g1727 297 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam01g1727 297 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam01g1727 297 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam01g1727 297 MobiDBLite consensus disorder prediction 205 221 - -
Cam01g1727 297 MobiDBLite consensus disorder prediction 260 297 - -
Cam01g1727 297 Gene3D - 2 100 IPR036388 -
Cam01g1727 297 MobiDBLite consensus disorder prediction 229 244 - -
Cam01g1727 297 Coils Coil 155 182 - -
Cam01g1727 297 MobiDBLite consensus disorder prediction 107 148 - -
Cam01g1727 297 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1727 K09419 - - csv:101216801 448.743
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1727 Cam-Chr1:30851387 Cam08g2076 Cam-Chr8:26311951 2.20E-44 dispersed
Cam01g1727 Cam-Chr1:30851387 Cam01g0304 Cam-Chr1:3384797 7.90E-50 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g1074 . . Bda04g00268 . . . . . Cmo03g00995 Cmo07g00722 . . . . Sed14g0845 Cpe19g00618 . Bhi03g01845 Tan03g1538 Cmetu08g0700 . Hepe04g1245 . . Cla01g01646 Cam01g1727 Cec04g1370 Cco04g1439 Clacu01g1752 Cmu01g1632 Cre04g1306 Cone6ag1394 Cone9ag1322 . . Lsi01g00978 Csa06g02938 . Cme08g00568 . . . . . . . . . . . Cma03g00981 Cma07g00708 Car03g00881 Car07g00700 Cpe10g00435 . Bhi10g02300 . . . . . . . . . . . . . . . Chy02g00913 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam05g0560 . 37 237 HSF AT4G17750 59.6 1.8e-62 237.3
Cam09g0717 . 8 249 HSF AT4G17750 51.0 1.8e-59 227.3
Cam08g2180 . 42 242 HSF AT4G17750 54.6 5.9e-58 222.2
Cam01g0304 . 41 163 HSF AT4G17750 61.8 3.6e-39 159.8
Cam08g2076 . 14 118 HSF AT4G17750 69.5 3.6e-39 159.8
Cam05g0560 . 38 242 HSF AT5G16820 57.0 4.7e-60 229.2
Cam07g0048 . 41 262 HSF AT5G16820 51.7 3.0e-59 226.5
Cam09g0717 . 9 221 HSF AT5G16820 54.0 5.3e-56 215.7
Cam08g2180 . 43 253 HSF AT5G16820 51.1 4.5e-55 212.6
Cam01g2455 . 9 191 HSF AT5G16820 50.3 5.2e-43 172.6
Cam06g0911 . 10 176 HSF AT5G16820 51.6 5.7e-42 169.1
Cam02g1887 . 13 188 HSF AT5G16820 50.3 2.8e-41 166.8
Cam10g0138 . 24 514 HSF AT1G32330 53.7 1.4e-120 430.3
Cam05g0560 . 26 227 HSF AT1G32330 54.0 1.0e-59 228.0
Cam07g0048 . 27 226 HSF AT1G32330 53.1 3.7e-57 219.5
Cam09g0717 . 8 217 HSF AT1G32330 53.0 6.3e-57 218.8
Cam08g2180 . 31 223 HSF AT1G32330 54.1 1.0e-54 211.5
Cam08g2076 . 20 117 HSF AT1G32330 72.4 3.0e-38 156.8
Cam07g0048 . 41 262 HSF AT3G02990 52.6 2.8e-62 236.5
Cam05g0560 . 38 241 HSF AT3G02990 57.6 2.4e-61 233.4
Cam09g0717 . 9 232 HSF AT3G02990 52.4 1.9e-58 223.8
Cam08g2180 . 43 242 HSF AT3G02990 51.7 5.7e-55 212.2
Cam06g0911 . 10 172 HSF AT3G02990 50.3 3.6e-41 166.4
Cam05g0560 . 25 287 HSF AT2G26150 52.3 1.1e-68 257.3
Cam10g0138 . 29 243 HSF AT2G26150 58.8 1.2e-60 230.7
Cam09g0717 . 3 216 HSF AT2G26150 53.0 1.5e-60 230.3
Cam11g0179 . 28 247 HSF AT2G26150 51.1 8.8e-53 204.5
Cam03g0699 . 5 156 HSF AT2G26150 52.0 3.9e-40 162.5
Cam10g1899 . 200 456 HSF AT5G03720 56.7 9.8e-75 277.7
Cam05g0353 . 6 462 HSF AT4G13980 51.7 3.1e-117 419.1
Cam02g1887 . 4 183 HSF AT4G13980 50.6 1.3e-43 174.5
Cam05g0560 . 26 218 HSF AT5G43840 54.4 1.6e-55 213.4
Cam08g2180 . 31 234 HSF AT5G43840 50.5 1.5e-45 180.3
Cam09g0717 . 4 333 HSF AT3G22830 53.3 4.0e-89 325.5
Cam07g0048 . 16 350 HSF AT3G22830 50.9 6.5e-87 318.2
Cam08g2180 . 31 253 HSF AT3G22830 54.1 2.0e-64 243.4
Cam10g0138 . 12 242 HSF AT3G22830 55.7 2.2e-63 240.0
Cam07g0048 . 26 322 HSF AT3G51910 52.5 8.2e-70 260.8
Cam09g0717 . 3 308 HSF AT3G51910 50.2 7.7e-68 254.2
Cam08g2180 . 31 223 HSF AT3G51910 56.0 4.8e-54 208.4
Cam07g0048 . 27 321 HSF AT3G63350 50.3 4.4e-66 248.4
Cam08g2180 . 31 230 HSF AT3G63350 52.5 3.4e-50 195.7
Cam02g1887 . 5 140 HSF AT3G63350 56.6 2.9e-38 156.0
Cam11g0179 . 32 248 HSF AT5G54070 51.4 3.2e-52 202.6
Cam01g1727 . 2 297 HSF AT4G36990 51.8 2.7e-71 265.8
Cam05g0952 . 613 720 HSF AT4G36990 64.8 3.9e-38 155.6
Cam08g2076 . 17 115 HSF AT5G62020 67.7 1.8e-38 156.8
Cam01g0304 . 64 385 HSF AT4G11660 51.8 2.1e-79 293.1
Cam08g2076 . 16 121 HSF AT4G11660 71.7 3.7e-44 176.0
Cam01g1727 . 2 107 HSF AT4G11660 71.7 3.4e-42 169.5
Cam03g1190 . 19 118 HSF AT4G11660 68.0 1.0e-38 157.9
Cam10g0138 . 33 126 HSF AT4G11660 69.1 1.7e-36 150.6
Cam10g1552 . 14 222 HSF AT2G41690 53.6 5.3e-52 201.4
Cam04g0366 . 7 214 HSF AT2G41690 51.0 2.5e-49 192.6
Cam08g2076 . 9 373 HSF AT1G46264 52.5 5.9e-89 324.7
Cam03g1190 . 18 199 HSF AT1G46264 51.9 2.9e-51 199.5
Cam10g0138 . 33 138 HSF AT1G46264 73.6 3.5e-41 166.0
Cam02g1887 . 5 115 HSF AT1G46264 63.1 4.0e-37 152.5
Cam10g1552 . 21 118 HSF AT1G46264 68.4 6.9e-37 151.8
Cam05g0560 . 37 237 HSF AT4G17750 59.6 1.8e-62 237.3
Cam09g0717 . 8 249 HSF AT4G17750 51.0 1.8e-59 227.3
Cam08g2180 . 42 242 HSF AT4G17750 54.6 5.9e-58 222.2
Cam01g0304 . 41 163 HSF AT4G17750 61.8 3.6e-39 159.8
Cam08g2076 . 14 118 HSF AT4G17750 69.5 3.6e-39 159.8
Cam05g0560 . 38 242 HSF AT5G16820 57.0 4.7e-60 229.2
Cam07g0048 . 41 262 HSF AT5G16820 51.7 3.0e-59 226.5
Cam09g0717 . 9 221 HSF AT5G16820 54.0 5.3e-56 215.7
Cam08g2180 . 43 253 HSF AT5G16820 51.1 4.5e-55 212.6
Cam01g2455 . 9 191 HSF AT5G16820 50.3 5.2e-43 172.6
Cam06g0911 . 10 176 HSF AT5G16820 51.6 5.7e-42 169.1
Cam02g1887 . 13 188 HSF AT5G16820 50.3 2.8e-41 166.8
Cam10g0138 . 24 514 HSF AT1G32330 53.7 1.4e-120 430.3
Cam05g0560 . 26 227 HSF AT1G32330 54.0 1.0e-59 228.0
Cam07g0048 . 27 226 HSF AT1G32330 53.1 3.7e-57 219.5
Cam09g0717 . 8 217 HSF AT1G32330 53.0 6.3e-57 218.8
Cam08g2180 . 31 223 HSF AT1G32330 54.1 1.0e-54 211.5
Cam08g2076 . 20 117 HSF AT1G32330 72.4 3.0e-38 156.8
Cam07g0048 . 41 262 HSF AT3G02990 52.6 2.8e-62 236.5
Cam05g0560 . 38 241 HSF AT3G02990 57.6 2.4e-61 233.4
Cam09g0717 . 9 232 HSF AT3G02990 52.4 1.9e-58 223.8
Cam08g2180 . 43 242 HSF AT3G02990 51.7 5.7e-55 212.2
Cam06g0911 . 10 172 HSF AT3G02990 50.3 3.6e-41 166.4
Cam05g0560 . 25 287 HSF AT2G26150 52.3 1.1e-68 257.3
Cam10g0138 . 29 243 HSF AT2G26150 58.8 1.2e-60 230.7
Cam09g0717 . 3 216 HSF AT2G26150 53.0 1.5e-60 230.3
Cam11g0179 . 28 247 HSF AT2G26150 51.1 8.8e-53 204.5
Cam03g0699 . 5 156 HSF AT2G26150 52.0 3.9e-40 162.5
Cam10g1899 . 200 456 HSF AT5G03720 56.7 9.8e-75 277.7
Cam05g0353 . 6 462 HSF AT4G13980 51.7 3.1e-117 419.1
Cam02g1887 . 4 183 HSF AT4G13980 50.6 1.3e-43 174.5
Cam05g0560 . 26 218 HSF AT5G43840 54.4 1.6e-55 213.4
Cam08g2180 . 31 234 HSF AT5G43840 50.5 1.5e-45 180.3
Cam09g0717 . 4 333 HSF AT3G22830 53.3 4.0e-89 325.5
Cam07g0048 . 16 350 HSF AT3G22830 50.9 6.5e-87 318.2
Cam08g2180 . 31 253 HSF AT3G22830 54.1 2.0e-64 243.4
Cam10g0138 . 12 242 HSF AT3G22830 55.7 2.2e-63 240.0
Cam07g0048 . 26 322 HSF AT3G51910 52.5 8.2e-70 260.8
Cam09g0717 . 3 308 HSF AT3G51910 50.2 7.7e-68 254.2
Cam08g2180 . 31 223 HSF AT3G51910 56.0 4.8e-54 208.4
Cam07g0048 . 27 321 HSF AT3G63350 50.3 4.4e-66 248.4
Cam08g2180 . 31 230 HSF AT3G63350 52.5 3.4e-50 195.7
Cam02g1887 . 5 140 HSF AT3G63350 56.6 2.9e-38 156.0
Cam11g0179 . 32 248 HSF AT5G54070 51.4 3.2e-52 202.6
Cam01g1727 . 2 297 HSF AT4G36990 51.8 2.7e-71 265.8
Cam05g0952 . 613 720 HSF AT4G36990 64.8 3.9e-38 155.6
Cam08g2076 . 17 115 HSF AT5G62020 67.7 1.8e-38 156.8
Cam01g0304 . 64 385 HSF AT4G11660 51.8 2.1e-79 293.1
Cam08g2076 . 16 121 HSF AT4G11660 71.7 3.7e-44 176.0
Cam01g1727 . 2 107 HSF AT4G11660 71.7 3.4e-42 169.5
Cam03g1190 . 19 118 HSF AT4G11660 68.0 1.0e-38 157.9
Cam10g0138 . 33 126 HSF AT4G11660 69.1 1.7e-36 150.6
Cam10g1552 . 14 222 HSF AT2G41690 53.6 5.3e-52 201.4
Cam04g0366 . 7 214 HSF AT2G41690 51.0 2.5e-49 192.6
Cam08g2076 . 9 373 HSF AT1G46264 52.5 5.9e-89 324.7
Cam03g1190 . 18 199 HSF AT1G46264 51.9 2.9e-51 199.5
Cam10g0138 . 33 138 HSF AT1G46264 73.6 3.5e-41 166.0
Cam02g1887 . 5 115 HSF AT1G46264 63.1 4.0e-37 152.5
Cam10g1552 . 21 118 HSF AT1G46264 68.4 6.9e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007234 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51294 PF00447 HSF_DNA-bind 1.70E-32 CL0123 Cam TF