Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1733 ATGGAGTGGGTTCGAGGAGATGAGATTGGACATGGAAGTTTTGCCACCATCAATTTCGCCACGCCTTCCAATACTTATTCTGCTCATCAGTTTCCTCCATTAATGGCGGTTAAATCATCTGGAGCTGTTTCCTCTGCCTCGCTCAAGAATGAGAAGCAAGTTTTGGATCTTCTGGGTGTTGATTGCCCACAAATTATTCGGTGTTTTGGGGACAGTTGTAGTTACGAGAACGGCGAGGAACTTTACAATCTGTTTCTCGAGTATGCTAGTGGTGGGAGTTTAGCTGATAGAATACAGAGCCGCGGTGGTCGGCTACCGGAATTTGAAGTTAGACGTTACACGAGGACGATTCTCGAAGGGCTTCGGTATATTCACGGAAAAGGATTTGTTCACTGCGATGTAAAGCCTAGGAATATTCTCGTGTTTCATGACGGTGATGTTAAGATCGCGGATTTCGGATTATCGAAGAAGGCGGGAAAAAACAGAGCAGAAACAGGGGGAGAGGTAGGGAGATTTCAATTGAGAGGCTCTCCTCTGTACATGTCACCGGAATCGGTAAACGATAACGAGTATGAGTCGCCGTGTGACATATGGGCCGTCGGATGTGCGGTGGTCGAGATGTTGACAGGAAAACCCGCGTGGAATTGCCGGCCGGAATCCAACGTCTATTCTCTGTTACTAAAAATTGGGATCGGAGAGGAATTGCCGGAAATTCCTAAAGATTTATCGGAAGAAGGGAAAGATTTTCTCAGAAAATGCTTGGTGAAGGATCCTTCAAAGAGATGGACAGCCGATATGCTTCTGAAACACCCATTTGTAGCAGAGTCCGGGTGCTCTGTTCCATTGACGACCATGGACGAACCATCGACGTCGCCGAGATGCCCTTTCGATTTCGAAGATTGGGCATCGATTCAGTCAGAAGAGGGGGTTCAGAGAATTGAGGAGGAATCAAATTGTTGGTTGAATTGGTCGTGTTCGTGGTTGTGTTGTCCGAGGGAGAGGCTGCTTCAGCTAGTGGACAATGGGCCAGTTAACTGGTCCGTCACTGACAGTTGGGTCACCGTCAGATGA 1071 47.71 MEWVRGDEIGHGSFATINFATPSNTYSAHQFPPLMAVKSSGAVSSASLKNEKQVLDLLGVDCPQIIRCFGDSCSYENGEELYNLFLEYASGGSLADRIQSRGGRLPEFEVRRYTRTILEGLRYIHGKGFVHCDVKPRNILVFHDGDVKIADFGLSKKAGKNRAETGGEVGRFQLRGSPLYMSPESVNDNEYESPCDIWAVGCAVVEMLTGKPAWNCRPESNVYSLLLKIGIGEELPEIPKDLSEEGKDFLRKCLVKDPSKRWTADMLLKHPFVAESGCSVPLTTMDEPSTSPRCPFDFEDWASIQSEEGVQRIEEESNCWLNWSCSWLCCPRERLLQLVDNGPVNWSVTDSWVTVR 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30926986 30928056 + CaPI482276_01g017330.1 Cam01g1733 118815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1733 356 Gene3D Phosphorylase Kinase; domain 1 1 95 - -
Cam01g1733 356 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 274 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cam01g1733 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam01g1733 356 ProSiteProfiles Protein kinase domain profile. 3 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g1733 356 Pfam Protein kinase domain 5 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g1733 356 ProSitePatterns Protein kinases ATP-binding region signature. 9 38 IPR017441 GO:0005524(InterPro)
Cam01g1733 356 SUPERFAMILY Protein kinase-like (PK-like) 3 299 IPR011009 -
Cam01g1733 356 CDD STKc_MAPKKK 2 273 - -
Cam01g1733 356 SMART serkin_6 3 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g1733 356 Gene3D Transferase(Phosphotransferase) domain 1 96 317 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1733 Cam-Chr1:30926986 Cam09g1076 Cam-Chr9:11121031 4.40E-63 dispersed
Cam04g0210 Cam-Chr4:7562884 Cam01g1733 Cam-Chr1:30926986 1.70E-52 transposed
Cam04g0469 Cam-Chr4:17491104 Cam01g1733 Cam-Chr1:30926986 2.20E-07 transposed
Cam06g1209 Cam-Chr6:23320237 Cam01g1733 Cam-Chr1:30926986 4.80E-43 transposed
Cam08g1009 Cam-Chr8:16221524 Cam01g1733 Cam-Chr1:30926986 3.30E-54 transposed
Cam09g1110 Cam-Chr9:11542350 Cam01g1733 Cam-Chr1:30926986 2.10E-55 transposed
Cam01g1733 Cam-Chr1:30926986 Cam02g1287 Cam-Chr2:25248687 9.90E-116 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84889 PF00069 Pkinase 1.10E-54 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1733 - - - 0.0