Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1739 ATGTGGGATCTGAACGATTGGCCTGATGTGAGGGAGGAGGATGAATGTTCGTCGGCGAAGACATCGATTGAAGGAGATGGGGAGGAGGAGAAAGGGAAAAGAGTGGGATCGGTTTCCAATTCAAGTTCTTCGGCTGTGGTTGTGGAGGAGGAGGAAGATGTGGAAGTGGAAGGATCCGATGAGGAGGAACCCACGCCCATGGTCATCACTCGCCAGTTTTTCCCACTCGAAGAAACTCCCCTTCCACCTCCTTCTTCTGCCGCCTTCCCTCGGGCTCACTGGGTTGGGGTCAAATTTGCCCACCCCGATCCTCTCGCCGCTCCTAATAATTCTATCACCTCCACCGACCTCTCTCACCCCATTAAGAAGAGCCGCCGCGGCCCAAGGTCCCGTAGCTCCCAGTACCGCGGCGTCACTTTCTACCGGAGAACCGGTCGTTGGGAGTCCCATATTTGGGATTGCGGAAAGCAAGTCTATCTCGGTGGATTCGATACGGCACATGCAGCTGCTCGTGCTTACGATAGGGCGGCCATTAAATTCCGAGGAGTGGAAGCGGACATAAACTTCAGCATCGAAGATTACGAAGACGATTTAAAACAGATGGGAAATCTAACCAAGGAGGAATTTGTGCATGTACTTCGCCGACAAAGCACTGGCTTCCCCAGAGGGAGCTCCAAGTATAGAGGTGTAACACTTCACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTCTTGGCAAAAAGTATGTCTATTTGGGTTTGTTCGATACCGAGATTGAAGCCGCAAGGGCTTATGATAAAGCTGCAATCAAGTGTAATGGCAAAGAAGCTGTCACCAATTTCGATCCCAGCATCTACGAGAATGAACTGAACCCGACAACTGATTCAAGTAGCAATTTGGCGGATCATAGTCTTGATTTGAGTTTAGGAAATTCAAGCTCAAAGCAAAACGACAGCTCAAATGGTTCCATAGGTCCACACCATTCTTCTTCAGCTGATTGGCAACGCAATCAAGGATTTAGGCCACTTCAGCTAAATTTGGAAAATGGAGGAGGTGGGAACAAAAATTACAATAATGTAGAGAGAAGAAATAGGTACCTGGAGAGTGAAACTATGCAGCTGCTAAGCCAAACGCACATTCAATCTCCCGCTTCATTTGAAATGCAAAGACACGGTCAGGCTCAATTCAGCCGGCCACAGACGGCGGTTGGCGCAGCAGATCAGCCAAACTCCCAGATATTGCTTCACAATCACAATCACAATCACAATCCAACCTTCAACTATCAAATTCAGTTTTCAGGCAGCAGTAATGGAGGCCGAATGGTAGGAAGTGATTTATCACTATCTCTAAATGATCATCTTCAATCGGGGCCATCTCAAGTTCTTGCAACTGCTGCAGCATCATCAGGATTCGCACCCCAGATTAGACCTTCCAAAAATTGGCTGCACAACAATGGCTTTCATTGTCTCATGAGACCCTCTTGA 1488 48.32 MWDLNDWPDVREEDECSSAKTSIEGDGEEEKGKRVGSVSNSSSSAVVVEEEEDVEVEGSDEEEPTPMVITRQFFPLEETPLPPPSSAAFPRAHWVGVKFAHPDPLAAPNNSITSTDLSHPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSIEDYEDDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNPTTDSSSNLADHSLDLSLGNSSSKQNDSSNGSIGPHHSSSADWQRNQGFRPLQLNLENGGGGNKNYNNVERRNRYLESETMQLLSQTHIQSPASFEMQRHGQAQFSRPQTAVGAADQPNSQILLHNHNHNHNPTFNYQIQFSGSSNGGRMVGSDLSLSLNDHLQSGPSQVLATAAASSGFAPQIRPSKNWLHNNGFHCLMRPS 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 30987597 30990094 - CaPI482276_01g017390.1 Cam01g1739 118821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1739 495 Gene3D AP2/ERF domain 225 284 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g1739 495 Gene3D AP2/ERF domain 133 192 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g1739 495 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 40 355 - -
Cam01g1739 495 FunFam AP2-like ethylene-responsive transcription factor 133 192 - -
Cam01g1739 495 MobiDBLite consensus disorder prediction 105 134 - -
Cam01g1739 495 FunFam AP2-like ethylene-responsive transcription factor 225 285 - -
Cam01g1739 495 CDD AP2 134 189 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g1739 495 SUPERFAMILY DNA-binding domain 133 191 IPR016177 GO:0003677(InterPro)
Cam01g1739 495 CDD AP2 225 285 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g1739 495 SMART rav1_2 134 196 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g1739 495 SMART rav1_2 226 289 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g1739 495 MobiDBLite consensus disorder prediction 290 335 - -
Cam01g1739 495 PRINTS Ethylene responsive element binding protein signature 227 238 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g1739 495 PRINTS Ethylene responsive element binding protein signature 265 285 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g1739 495 ProSiteProfiles AP2/ERF domain profile. 226 283 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g1739 495 MobiDBLite consensus disorder prediction 1 64 - -
Cam01g1739 495 ProSiteProfiles AP2/ERF domain profile. 134 190 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g1739 495 MobiDBLite consensus disorder prediction 48 62 - -
Cam01g1739 495 SUPERFAMILY DNA-binding domain 225 285 IPR016177 GO:0003677(InterPro)
Cam01g1739 495 Pfam AP2 domain 225 275 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g1739 495 Pfam AP2 domain 134 182 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g1739 495 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1739 Cam-Chr1:30987597 Cam02g2147 Cam-Chr2:34252111 4.00E-91 dispersed
Cam01g1739 Cam-Chr1:30987597 Cam02g1278 Cam-Chr2:25056500 1.20E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51296 PF00847 AP2 3.40E-10 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1739 K09284 - csv:101214724 773.467