Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1740 ATGGACGGCGGAGGAGAAGCTACCAGAAAAAGAGGGCTAGACAATCAGAGGCTTTACAAAGGGATAAGGATGAGGAAGTGGGGAAAGTGGGTGGCTGAGATTCGAGAGCCCAATAAGCGCTCTAGGATTTGGCTCGGCTCTTACTCTTCTCCAGTCGCCGCCGCCAGGGCCTACGATACCGCCGTTTTTTACCTCAGAGGTCCTTCCGCCAGGCTTAATTTTCCCGAGTTGTTAGCAGGGGAAGGCCGTGGAATTAGCGCCGGCGCCGGCGACATGTCGGCGGCTACTATACGGAAGAAAGCCACGGAGGTGGGTGCAAGAGTGGATGCTCTGGAGAGTTCTTTAGGGCAACACAGTCACCACAACCGGAACCATCATTCCCACGCATCGGCGTCTCCGCCAGAGACAAAAGGCTGCAGCGGGTTTCTGGATCGGGTGGATTTGAACAAATTACCCGACCCGGAAGAAGAAGATGAAGAAGGGGATGGAGAGTTCGAGTGGGAGAGAGTCGAGAGACACTGA 522 55.17 MDGGGEATRKRGLDNQRLYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDTAVFYLRGPSARLNFPELLAGEGRGISAGAGDMSAATIRKKATEVGARVDALESSLGQHSHHNRNHHSHASASPPETKGCSGFLDRVDLNKLPDPEEEDEEGDGEFEWERVERH 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31011813 31012334 - CaPI482276_01g017400.1 Cam01g1740 118822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1740 173 CDD AP2 19 77 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g1740 173 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g1740 173 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 12 160 - -
Cam01g1740 173 FunFam Ethylene-responsive transcription factor 2 17 76 - -
Cam01g1740 173 MobiDBLite consensus disorder prediction 114 173 - -
Cam01g1740 173 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g1740 173 SMART rav1_2 18 81 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g1740 173 Pfam AP2 domain 19 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g1740 173 SUPERFAMILY DNA-binding domain 18 76 IPR016177 GO:0003677(InterPro)
Cam01g1740 173 PRINTS Ethylene responsive element binding protein signature 57 77 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g1740 173 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1740 Cam-Chr1:31011813 Cam08g0099 Cam-Chr8:1844850 2.90E-20 dispersed
Cam01g1740 Cam-Chr1:31011813 Cam02g1276 Cam-Chr2:25023077 8.60E-41 wgd
Cam01g1740 Cam-Chr1:31011813 Cam05g2214 Cam-Chr5:30439100 1.60E-39 wgd
Cam01g1740 Cam-Chr1:31011813 Cam08g2085 Cam-Chr8:26393710 2.10E-34 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51297 PF00847 AP2 2.30E-11 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1740 K09286 - csv:101214481 292.737