Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1742 ATGAACCCTAACCACCCCACATTTCCCTCTTCCCTTCCACTTTTCTGTTCCGTTGTACTGTTTTCTCTCTCCGCTTCTGCCGCCTCTGGATTGGCCTTTCAAATTTCGCCGGAAGACTTACTGCTGCCCTCCGACGCCGTTTCTCTTCTTTCCTTCAAGTCCAAAGCCGATTTGAACAACAAGCTTCTTTACACTCTCAATGAGCGCTTTGATTACTGTCAATGGCAGGGCGTGAAGTGTGTACAGGGTCGTGTTGTTCGACTGGTTCTTCAGTCGTTTGGTCTCCGAGGGACATTGGCTCCAAATACAGTGTCTCAGCTCGACCAGCTTCGGATCCTCAGCCTGCATAATAACTCCCTCGAAGGACCCATCCCTGACCTATCTAGACTCTTCAATCTTAAATCTCTGTTCCTTGGCCGAAACTCCTTCGTTGGGTCTTTTCCGCCGTCGATTCTCACTCTTCACCGGCTTCAGACTCTTGATCTTTCCTATAACAACTTTACTGGTCCGCTCCCGACGAGGCTTTCCTCGTTGGACCGACTCATTACTCTTAGGCTTGAATGGAATGGTTTCAATGGAAGTATTCCTCCCTTAAATCAGTCATTCCTTGAGGTCTTCAATGTCACGGGGAACAACCTGACCGGCCAAATTCCAGTTACCCCCACTCTGTCACGTTTTAACACGTCGTCGTTTTTCTGGAACCCAAATCTCTGTGGCGAGATCGTTAACAAGGCATGTCATTCACCCACTCCATTCTTTGAAGCTTCCAATGCCACTCCGCCATCTATCCCTTCCGTCCAAAGTGCACAATCACAGGACGTACTTCTCTCTCCCGTTACTCATGTTAAGCACAAGGAAACCGGTATGATTTTGGGGCTTTCAGTCGGCACTGTAGTTTTAATAGTCGGTGTTTTATGTTTCTATGTAGCTACCAGAACCCAGAGAAGTCAGACTGCGTCGAAGCCGGCAATGCCGCAATTCGAAACCGACACTACTTTTTCCACAGCTTCCGCAATTAACAACCGAGTCGAGGGGAAAGGCGAATTTCAAGCCAAAATGAAAGAAAGTGAAGAAATGCCAAAAGCCCAGAAGAGTGGTAATCTTATATTTTGTGAAGGGGAAGCAGAATTATTCAACTTAGAGCAGTTAATGAAGGCTTCGGCCGAATTGCTCGGTAGAGGCACAATGGGAACTACATACAAAGCAGTGCTCTGCAACCAGCTCATCATAACGGTGAAGCGTCTTGATGCTAATAAGACCGCCGCGACGAGCAGCGAAGTGTTCGACCGACATTTGGGAGCACTGGGTGCGCTTCATCACCCTAATTTGGTACCAGTTAGGGCATACTTCCAATCGAAGGGAGAGAGATTAGTGGTGTACGATTACCAACCTAATGGCAGTCTTTACAACCTCATTCACGGTTCAAGATCAGCGAGGGCTAAGCCTTTGCATTGGACGTCATGCTTGAAGATTGCAGAAGATTTAGCTCAGGGCATTGCCTATATACATCAAGCCTCGAATTTAATCCATGGCAACTTAAAGTCTTCTAATGTTCTCCTTGGTGCAGAGTTTGAGGCTTGTCTCACAGACTATGGGCTTTCTGCTCTGGCAGAGGCCTATGAAGATCCAGATTGTTCACGCTACCAAGCCCCTGAAACTCGCAAGTCGAGCCGGAACGCGACCCAGAAGAGCGATGTCTATTCCTTCGGCGTCCTTTTGCTGGAACTTTTGACAGGAAGACATCCTGCACACCATCCATTTCTTGAGCCAACTGACATGCCAGAATGGGTGAGAGTAGTTAGGGAAGATGATGGTGGGGATAGTAACCAACTTGGAATGCTTACTGAGGTGGCTAGCATCTGCAGTACTACATCCCCTGAACAGAGGCCGGCCATGTGGCAAGTTTTGAAAATGATACTGGAGATTAAAGAGAGTGTCATGACAGAGGACAGTGAATCTAGTGGCTTTTAA 1971 47.69 MNPNHPTFPSSLPLFCSVVLFSLSASAASGLAFQISPEDLLLPSDAVSLLSFKSKADLNNKLLYTLNERFDYCQWQGVKCVQGRVVRLVLQSFGLRGTLAPNTVSQLDQLRILSLHNNSLEGPIPDLSRLFNLKSLFLGRNSFVGSFPPSILTLHRLQTLDLSYNNFTGPLPTRLSSLDRLITLRLEWNGFNGSIPPLNQSFLEVFNVTGNNLTGQIPVTPTLSRFNTSSFFWNPNLCGEIVNKACHSPTPFFEASNATPPSIPSVQSAQSQDVLLSPVTHVKHKETGMILGLSVGTVVLIVGVLCFYVATRTQRSQTASKPAMPQFETDTTFSTASAINNRVEGKGEFQAKMKESEEMPKAQKSGNLIFCEGEAELFNLEQLMKASAELLGRGTMGTTYKAVLCNQLIITVKRLDANKTAATSSEVFDRHLGALGALHHPNLVPVRAYFQSKGERLVVYDYQPNGSLYNLIHGSRSARAKPLHWTSCLKIAEDLAQGIAYIHQASNLIHGNLKSSNVLLGAEFEACLTDYGLSALAEAYEDPDCSRYQAPETRKSSRNATQKSDVYSFGVLLLELLTGRHPAHHPFLEPTDMPEWVRVVREDDGGDSNQLGMLTEVASICSTTSPEQRPAMWQVLKMILEIKESVMTEDSESSGF 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31033860 31036831 - CaPI482276_01g017420.1 Cam01g1742 118824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1742 656 ProSiteProfiles Leucine-rich repeat profile. 109 131 IPR001611 GO:0005515(InterPro)
Cam01g1742 656 Gene3D Ribonuclease Inhibitor 43 199 IPR032675 -
Cam01g1742 656 SUPERFAMILY L domain-like 47 239 - -
Cam01g1742 656 Pfam Leucine Rich Repeat 109 126 IPR001611 GO:0005515(InterPro)
Cam01g1742 656 Pfam Leucine Rich Repeat 156 178 IPR001611 GO:0005515(InterPro)
Cam01g1742 656 FunFam Leucine-rich repeat receptor-like protein kinase 156 248 - -
Cam01g1742 656 ProSiteProfiles Protein kinase domain profile. 385 647 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g1742 656 Gene3D Transferase(Phosphotransferase) domain 1 464 654 - -
Cam01g1742 656 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 44 648 IPR046959 -
Cam01g1742 656 Gene3D Ribonuclease Inhibitor 200 249 IPR032675 -
Cam01g1742 656 Gene3D Phosphorylase Kinase; domain 1 349 462 - -
Cam01g1742 656 Pfam Protein tyrosine and serine/threonine kinase 389 637 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam01g1742 656 FunFam Probable inactive receptor kinase At5g67200 44 154 - -
Cam01g1742 656 SUPERFAMILY Protein kinase-like (PK-like) 389 643 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1742 Cam-Chr1:31033860 Cam10g1909 Cam-Chr10:33160136 2.10E-71 dispersed
Cam01g1742 Cam-Chr1:31033860 Cam07g0702 Cam-Chr7:14836671 1.80E-107 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84891 PF07714 PK_Tyr_Ser-Thr 1.00E-30 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1742 - - - 0.0