Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1744 ATGGCTGTGGAGATCAAGTCCCACCCTTACCCACTCCTCACTATGGAAGCCAACGCCGTCCAAGAAGCCGCTTCCGGCCTCGAAAGCGTCGAGAAGCTCATCCGATTACTTTCTAATGCAAATGCCCCTCAACCTCACTCCTTACCCTCCTCCACTCAATCCCCCATCGATTTCCCCACCGACTGCCGCGCCGCTGCCGATGTAGCCGTTTCCAAGTTCAAAAAGGTTATTTCTCTCCTCGGCCGTAGCCGCCTCGGCCACGCTCGTTTCAGGAGAGCTCCTCTGCCTCAACAACCTCACTACGCTACTCCCATACAGCAGATCCCACCCCATCCCCACCTTGACAACAACCACAACAATAACAACGACTCTGTTAATTTCTCCGCCCATAATTCCTTCATTTCCTCGTTGACCGGCGACGCCGACACCAAGCATCCTTCTTCCTCTTCCTCACCTTTTCTCATTACCAACCTCTCCCAAGTCTCCTCCGTTGGGAAACCACCTCTTTCTACTTCTTCCCTCAAGAGGAAGTGCAGCTCAGATAACTTGGGATCCGGCAAGTGCGCCGCTGCTTCTTCCTCTGCCCGATGTCACTGTTCCAAGAAGAGAAAACTGAGGGTGAAGAGGGTGGTGAGAGTTCCGGCGATAAGCTTGAAAATGGCGGATATCCCACCGGACGATTATTCATGGCGGAAATATGGTCAAAAGCCCATTAAAGGCTCTCCACATCCCAGGGGTTATTACAAGTGTAGCAGTGTGAGAGGTTGCCCAGCCCGAAAACACGTAGAACGGGCCGTAGACGATCCGACGATGCTAGTGGTGACTTACGAAGGAGAGCACAATCACACACTCTCTGTGCCCGAAACCTCCAGTCTCATCCTCGAGTCCTCTTAG 894 53.13 MAVEIKSHPYPLLTMEANAVQEAASGLESVEKLIRLLSNANAPQPHSLPSSTQSPIDFPTDCRAAADVAVSKFKKVISLLGRSRLGHARFRRAPLPQQPHYATPIQQIPPHPHLDNNHNNNNDSVNFSAHNSFISSLTGDADTKHPSSSSSPFLITNLSQVSSVGKPPLSTSSLKRKCSSDNLGSGKCAAASSSARCHCSKKRKLRVKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERAVDDPTMLVVTYEGEHNHTLSVPETSSLILESS 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31053682 31054792 - CaPI482276_01g017440.1 Cam01g1744 118826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1744 297 MobiDBLite consensus disorder prediction 162 187 - -
Cam01g1744 297 ProSiteProfiles WRKY domain profile. 219 285 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam01g1744 297 MobiDBLite consensus disorder prediction 100 127 - -
Cam01g1744 297 SUPERFAMILY WRKY DNA-binding domain 221 283 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam01g1744 297 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 19 285 IPR044810 GO:0003700(InterPro)
Cam01g1744 297 FunFam WRKY transcription factor 65 208 285 - -
Cam01g1744 297 Gene3D WRKY domain 208 285 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam01g1744 297 Pfam WRKY DNA -binding domain 226 282 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam01g1744 297 SMART WRKY_cls 224 284 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam01g1744 297 Pfam Plant zinc cluster domain 175 222 IPR018872 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1744 Cam-Chr1:31053682 Cam05g2845 Cam-Chr5:35518474 2.40E-54 dispersed
Cam02g0826 Cam-Chr2:10556202 Cam01g1744 Cam-Chr1:31053682 3.30E-85 transposed
Cam01g1744 Cam-Chr1:31053682 Cam05g2221 Cam-Chr5:30489146 7.80E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51298 PF03106 WRKY 3.80E-26 CL0274 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1744 - - - 0.0