Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1749 ATGAATAAACTCAGTTGGGAATTGAATTACATCATCCATCCAAACAGATTAAACAAACGTGAAATTAGCCAATCGATCGCCAATTTTATCAAAGTTCTTCACGCCCTACACGACCTTCGCGGAGATCTTAACTGGACGCGCCATCTTCTTCGCTTCCTTTCCTTCCCAATCATTGGTTCCATGAGATCGAGCCCAAGTTTTCTATTCGTCGCTGATAATAAAGCAACAAACCTGATTCATTTGTATGATAAAATGGATAATGGAACTTCCAATAGTTCAACTCAATCTGCAGTCACCAATTCAGCTCCAATAGTTGATAGCCAAAGTAGTAAAGGAGATAATTTGACATCTATTTTATCTTCGTCTGGAATATCATCTTGGGCTAAGAGTTTCAGAAATCCACGACCACCTGAAGCAGCAGAAAATGACTCCAAAGCAGGAAATTCTGGGATGTCAGCAATTGCTCGTTTCAGTAGTGGTTTTGGACTCCGGATACCTGCGATGTCTCCTGTACAAAGTGATGGTGCTGCAGATACCAAACCAGCAATGCAATCTGGTGTTTTTGAATCATTCACAAAAGGTTTAGTTGACACATCTCAGAATGCAGTAAAGGCTATGCAGGTAAAAGCACGTCATATTGTCTCTCAGAACAAGCGAAGATATCAGGAAGGAGAATTTGATTTGGATATGACATATATCACCGAAAACATAATTGCTATGGGGTTTCCTGCTGGTCACATGAGCTCTGGTTTTTTCGGATTCCTTGAGGGATTTTACAGAAACCATATGGAGGAAGTGATCAAATTTTTTGAAACTCATCATAAGGGAAAATACAAAGTTTACAATCTTTGCTCAGAGCGTTTGTATGATGCCGCATTATTTGAGGGGAAGGTTGCACATTTCCCGTTTGATGATCATAATTGTCCTCCTATCCATCTCACAAGATCATTTTGTCAAAGTGCATATGCATGGTTAAAGGAGGATATTGAGAATGTGGTTGTTGTTCATTGTAAAGCTGGTATGGCAAGAACAGGGCTAATGATTTGCAGCCTCCTTTTATTCCTAAAGTTCTTCCAAACATCAGCAGAGGCGATTGACTATTATAATCAGAAAAGATGCGTGGATGGGAAGGCTTTGGTTCTTCCTAGCCAGATTAGGTATGTCAAGTATTTTGAGCGGATTTTAACACATTTCAACGGAAATACTCCACCAGGACGGAGGTGCATGCTGAGAGGTTTTCGGCTTCACAAGTGCCCGTATTGGGTTAGGCCTTCCATTACGATATCAAATCACAGTGAGATTTTGTTCTCAACAAGAAAGCATCCAAAGACAAAGGATTTAATGCCAGAAGATTTCTGGATTAGGGCACCAAAGAAAGGATTTGTAGTCTTTGCACTGCCAGGTGAGCCTGGTTTGACAGAGTTGTCTGGGGATTTCAAGATTCATTTTCATGACCGGCATGGAGACTTTTACTGTTGGTTAAATACAACAATGACAGAAAACAAAATATTATTAAGTGACACGGATCTTGATGGTTTCGATAAGAGAAAACTTCCAACCCCTGGATTTCAAGTCGAAGTTGTGATGATTGACTATGATGGTTCTTTGTCAACACGATTGAAAACTGATTCAACTAGCAAAGGATCTGATCGTCACTCTATTCATGATCGAGCATCAGGTAATGAAGCAGCACAATCCAACACAAACAAAATTTCCGGAGGTGAAGAAAATGATGACGACGTATTCTCCGACAGTGATGAAGAAAATGGTGACATAAAAACCAGTCTAGCTCAATCAACTTCTGGAACTGGAAATGGGACTTCAAAAGCTGATCATTCATCAACAACAATTGCCTCCGGAAGAATTGGGAGTTTAGCGCATGACACTAGTTGTTTGACCCTCGGAAATGAGAAAAACTCACAACCTAGTGCTCCAAAAGAACCTGCCGTAATACAACCATCAGCCCTTGAGATCCCAAATTTGGATTTAGTAAGGGCAAGTGATTTCAAGGCAATAGCCGCCGATGCGTCAGTCTTCACATTTGGGGATGAAGAAGACTTTGATAGTGAATGA 2073 40.57 MNKLSWELNYIIHPNRLNKREISQSIANFIKVLHALHDLRGDLNWTRHLLRFLSFPIIGSMRSSPSFLFVADNKATNLIHLYDKMDNGTSNSSTQSAVTNSAPIVDSQSSKGDNLTSILSSSGISSWAKSFRNPRPPEAAENDSKAGNSGMSAIARFSSGFGLRIPAMSPVQSDGAADTKPAMQSGVFESFTKGLVDTSQNAVKAMQVKARHIVSQNKRRYQEGEFDLDMTYITENIIAMGFPAGHMSSGFFGFLEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDAALFEGKVAHFPFDDHNCPPIHLTRSFCQSAYAWLKEDIENVVVVHCKAGMARTGLMICSLLLFLKFFQTSAEAIDYYNQKRCVDGKALVLPSQIRYVKYFERILTHFNGNTPPGRRCMLRGFRLHKCPYWVRPSITISNHSEILFSTRKHPKTKDLMPEDFWIRAPKKGFVVFALPGEPGLTELSGDFKIHFHDRHGDFYCWLNTTMTENKILLSDTDLDGFDKRKLPTPGFQVEVVMIDYDGSLSTRLKTDSTSKGSDRHSIHDRASGNEAAQSNTNKISGGEENDDDVFSDSDEENGDIKTSLAQSTSGTGNGTSKADHSSTTIASGRIGSLAHDTSCLTLGNEKNSQPSAPKEPAVIQPSALEIPNLDLVRASDFKAIAADASVFTFGDEEDFDSE 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31090180 31095422 + CaPI482276_01g017490.1 Cam01g1749 118831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1749 690 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 333 372 IPR000387 GO:0016311(InterPro)
Cam01g1749 690 MobiDBLite consensus disorder prediction 592 622 - -
Cam01g1749 690 Pfam PTEN2, C2 domain 405 533 - -
Cam01g1749 690 Pfam Polymorphic toxin system, DSP-PTPase phosphatase 297 353 - -
Cam01g1749 690 ProSiteProfiles C2 tensin-type domain profile. 405 532 IPR014020 -
Cam01g1749 690 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 206 610 IPR051281 GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)
Cam01g1749 690 SMART PTEN_C2_2 403 531 IPR014020 -
Cam01g1749 690 MobiDBLite consensus disorder prediction 538 622 - -
Cam01g1749 690 MobiDBLite consensus disorder prediction 127 149 - -
Cam01g1749 690 CDD PTP_PTEN 229 394 IPR045101 GO:0016791(InterPro)
Cam01g1749 690 ProSiteProfiles Phosphatase tensin-type domain profile. 219 398 IPR029023 -
Cam01g1749 690 MobiDBLite consensus disorder prediction 544 558 - -
Cam01g1749 690 Gene3D Protein tyrosine phosphatase superfamily 204 401 IPR029021 -
Cam01g1749 690 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 204 401 - -
Cam01g1749 690 ProSitePatterns Tyrosine specific protein phosphatases active site. 335 345 IPR016130 GO:0016311(InterPro)
Cam01g1749 690 MobiDBLite consensus disorder prediction 89 113 - -
Cam01g1749 690 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 232 399 IPR029021 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1749 Cam-Chr1:31090180 Cam10g1514 Cam-Chr10:28889371 8.50E-39 dispersed
Cam01g1749 Cam-Chr1:31090180 Cam02g0659 Cam-Chr2:7629061 2.20E-204 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1749 K01110 - csv:101213277 1098.19