Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1788 ATGGGTCGCTTCAATCTCCTTATTGTACTCTCTCTTCTTTCTCCCTTCTTCTTTCCTTCCCCAACACTCGCCCAACTCCGACAAAACTTCTACGCCAATATTTGCCCCAATGTTGAAAACATTGTCCGCTCCGAAGTTACCAAAAAATTTCAACAAACTTTCGTCACTGTTCCCGCCACTCTCCGCCTCTTCTTCCATGATTGCTTTGTTCAGGGATGTGATGCCTCTGTAATTATTGCTTCCACCGCATCCAACAAGGCCGAGAAGGACCATCCCGATAACCTCTCACTCGCCGGAGATGGATTCGACACCGTCATCAAAGCTAAAGCCGCCCTCGACGCCGTCCCTCAATGCCGAAACAGAGTCTCCTGTGCCGATATTCTCGCTTTAGCCACTCGTGATGTCATCGCATTGTCCGGCGGACCATCGTATGCGGTGGAGCTGGGAAGATTAGACGGCCTGGTTTCTAGAGCCTCCGACGTGGACGGGAGACTTCCAGGACCGACGTTTAATCTCAATCAGCTCAATTCTCTGTTTGCTGCGAATGGGCTTACACAACAAGACATGATCGCACTCTCAGCGGCTCACACCGTGGGATTCTCCCACTGTGGAAAATTCTCAAATCGAATTTACAGCTTTGCCCCTGGGAAACCAGTGGACCCTACACTAAACAAAACGTATGCAACCCAGCTACAAGCGATGTGCCCGAAGAATGTGGACCCGAGAGTGGCGATTAACATGGACCCAATCACGCCCAGAGCGTTTGACAACATTTACTTTAGAAATCTACAGCAAGGGATGGGGTTGTTCACGTCGGACCAGGTTCTATTTACGGACGCCCGGTCCAGGCCCACAGTGAACGCGTGGGCTACCAATTCCCAAGCCTTTAATAAAGCGTTTATTGAAGCTATGACTAAGTTGGGGCGGGTCGGGGTGAAGACCGGTAGAAACGGTAATATTCGGCGCGATTGTGGAGCTTTCAATTGA 987 50.46 MGRFNLLIVLSLLSPFFFPSPTLAQLRQNFYANICPNVENIVRSEVTKKFQQTFVTVPATLRLFFHDCFVQGCDASVIIASTASNKAEKDHPDNLSLAGDGFDTVIKAKAALDAVPQCRNRVSCADILALATRDVIALSGGPSYAVELGRLDGLVSRASDVDGRLPGPTFNLNQLNSLFAANGLTQQDMIALSAAHTVGFSHCGKFSNRIYSFAPGKPVDPTLNKTYATQLQAMCPKNVDPRVAINMDPITPRAFDNIYFRNLQQGMGLFTSDQVLFTDARSRPTVNAWATNSQAFNKAFIEAMTKLGRVGVKTGRNGNIRRDCGAFN 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31443952 31445259 + CaPI482276_01g017880.1 Cam01g1788 118870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1788 328 ProSitePatterns Peroxidases active site signature. 57 68 IPR019794 GO:0004601(InterPro)
Cam01g1788 328 ProSiteProfiles Plant heme peroxidase family profile. 25 328 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g1788 328 Gene3D Peroxidase, domain 2 166 307 - -
Cam01g1788 328 PRINTS Haem peroxidase superfamily signature 188 203 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g1788 328 PRINTS Haem peroxidase superfamily signature 140 152 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g1788 328 PRINTS Haem peroxidase superfamily signature 122 139 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g1788 328 PRINTS Haem peroxidase superfamily signature 248 263 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g1788 328 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g1788 328 FunFam Peroxidase 166 307 - -
Cam01g1788 328 FunFam Peroxidase 29 173 - -
Cam01g1788 328 CDD secretory_peroxidase 25 327 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cam01g1788 328 SUPERFAMILY Heme-dependent peroxidases 25 328 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g1788 328 Pfam Peroxidase 42 292 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g1788 328 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g1788 328 PRINTS Plant peroxidase signature 140 155 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g1788 328 PRINTS Plant peroxidase signature 262 279 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g1788 328 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g1788 328 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g1788 328 PRINTS Plant peroxidase signature 302 315 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g1788 328 PRINTS Plant peroxidase signature 121 131 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g1788 328 PRINTS Plant peroxidase signature 187 199 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g1788 328 PRINTS Plant peroxidase signature 246 261 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cam01g1788 328 ProSitePatterns Peroxidases proximal heme-ligand signature. 188 198 IPR019793 -
Cam01g1788 328 Gene3D - 29 328 - -
Cam01g1788 328 PANTHER - 13 328 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1455 Cam-Chr1:28122806 Cam01g1788 Cam-Chr1:31443952 4.50E-78 dispersed
Cam01g1788 Cam-Chr1:31443952 Cam02g1268 Cam-Chr2:24974905 4.30E-142 dispersed
Cam01g1788 Cam-Chr1:31443952 Cam09g1921 Cam-Chr9:33907442 2.20E-77 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1788 K00430 - csv:101206860 610.912