Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1789 ATGATGCAATTCAGCGAGACACCCCCCCGGTTGCACCAAACGACCACTACTACTACAAGGATTATTCCTCCTTCATTTCCAGAGATGTCGATGAATAATAAAAACCAAATTACAACAACGGGGCAGTTTCGAAGTAGGCGGCCATGGCCTGGTTTATTTCCTTGCTCATCCAAAGCTTTAGGGACTTGCTTGGGAGATGCCAATTGTATGGAACAATTGTTAGTTCATTGTGCCAACGCCATTGAAACCAACGACGCTACTCTCGCCCAACAAATCCTTTGGGTTCTTAACAACATTGCCCCTCCTGATGGCGATTCCAACCAACGCCTCACTTCCGCTTTCCTACGCGCTCTCGTCACACGCGCCACCAACACCGGCAACTGCAAGATCCTAGCCGCTATCACCACCGCATTCTCCTCCTCACTCACCACACACACCTTCTCCCTTATGGACCTCGCCGCCTTCGTCGACTTAACCCCCTGGCACCGCTTCGGCTTCACCGCCGCCAATGTCGCCATTCTCGACGCCATCGAGGGTTACTCCGTCGTACATGTCGTGGATTTCAGCTTGATGCATTGCATGCAAATCCCTACTTTAATCGACGCCATTGCTACACGATTTGAGGTTCCTCCGTTGTTGAAACTCACGACTGTAGCTGTTGTTGCCGTTAAAGACGCATCGCCTATGCTGGAGCTTTCGTACGACGAATTAGGTGCGAAATTAGTGAACTTCGCCAGGTCTAAAAACGTGACTATGGAATTTAGAGTGGTCCCGTCTTGTCATACAGACGGTTTCGCCAGTTTAATTGAACAAATCCGAATGCAAAATTTAATTTACGGACCTGAAAATAACGAAGCACTCGTTTTTAATTGTCACATGATGCTTCATTACATCCCTGAAGAAACATTAAACCCAAACCCATCTCCCAATTTCGACATGTCGTCCACTTCAATTCGTTCCATGTTTCTAAAGGCAATCCGTAGTTTAGACCCAACGATTGTGGTTTTAGTAGACGAAGATGCGGATTTCACTTCAAGCAAATTGGTTACACGATTGAGATCGGCGTTTAATTACCTATGGATTCCTTACGATTCCATGGATTCGTTTCTTCCGAGAAGCAGCAAGCAGAGGGAATGGTATGAAGCCGACATTTGTTGGAAGATTGAGAATGTAATTGCACAGGAAGGGATTCAACGAGTTCAAAGATTGGAACCGAAGGGACGGTGGGTTCAACGGATGGTGAACGCCAAATTCCGAGGGGTTCCGTTTGGAGAGGACGCCGTTACGGAGGTGAAGGCGATGCTTGACGAGCATGCAGCGGGATGGGGGTTGAAGAAAGAAGAGGACCACCTGCTGCTCACGTGGAAAGGGCACGACGTCGTTTTCGCTACTGCTTGGGTACCTTGCTAA 1410 48.16 MMQFSETPPRLHQTTTTTTRIIPPSFPEMSMNNKNQITTTGQFRSRRPWPGLFPCSSKALGTCLGDANCMEQLLVHCANAIETNDATLAQQILWVLNNIAPPDGDSNQRLTSAFLRALVTRATNTGNCKILAAITTAFSSSLTTHTFSLMDLAAFVDLTPWHRFGFTAANVAILDAIEGYSVVHVVDFSLMHCMQIPTLIDAIATRFEVPPLLKLTTVAVVAVKDASPMLELSYDELGAKLVNFARSKNVTMEFRVVPSCHTDGFASLIEQIRMQNLIYGPENNEALVFNCHMMLHYIPEETLNPNPSPNFDMSSTSIRSMFLKAIRSLDPTIVVLVDEDADFTSSKLVTRLRSAFNYLWIPYDSMDSFLPRSSKQREWYEADICWKIENVIAQEGIQRVQRLEPKGRWVQRMVNAKFRGVPFGEDAVTEVKAMLDEHAAGWGLKKEEDHLLLTWKGHDVVFATAWVPC 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31454873 31456282 - CaPI482276_01g017890.1 Cam01g1789 118871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1789 469 Pfam GRAS domain family 70 466 IPR005202 -
Cam01g1789 469 ProSiteProfiles GRAS family profile. 61 467 IPR005202 -
Cam01g1789 469 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 66 466 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1789 Cam-Chr1:31454873 Cam02g0171 Cam-Chr2:2706176 2.30E-96 dispersed
Cam01g1789 Cam-Chr1:31454873 Cam03g0134 Cam-Chr3:2246993 1.40E-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51300 PF03514 GRAS 1.20E-91 CL0063 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1789 - - - 0.0