Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1800 ATGGATACCTTGTTTCGGCTTGTCAATCTTCAATCTGAACAATCTTACAATTCCAGTAGAACTAATTCTAGCAGCTCTAGATCTTCTAGACAAAACCAATATCATCATTACCATCAACAGGATCAAGACGAAGAATGCTACAATCTTCTCATGGATGAGGAAGATTTCTCATCGTCTAGTAATTCTAGACAATATTATAATCCATACCATCCTCACCCACCTTCTACGGCTACTCCCACCACCACCGCCACCGCCTCCACCACTCCAACTCCGATAGATCAATTCTCATTCGTTTCCCCTTCACCGGATTTCAACTTCGAATTTTCCGGGAGGTGGGCCCCTGATATTCTCCTTGAAACCGCTAGGGCTATTTCTGACAGGAACAGCGCCCGCGTTCAGCAACTCATGTGGATGCTAAACGAACTTAGCTCTCCCTATGGAGATACGGATCAAAAGCTGGCTGCCTATTTCCTGCAGGCTTTGTTTAGCCGTATGACAGATTCCGGCGACCGTAATTACCGCGCTTTGGCCTCCGCTTCAGAGAAAACATGCTCATTCGAATCAACTAGGAAAGTGATGCTCAAGTTTCAGGAGGTTAGCCCCTGGACCACTTTTGGCCATGTTTCTTGTAATGGCGCATTAATTGAAGCCTTAGAAGGCGAATCAAAGCTACATATAATCGATATCAGCAACACCTATTGCACTCAATGGCCTACTTTGCTTGAAGCTCTTGCAACTCGTACGGACGACACGCCGCACCTCCGCCTCACCACGGTGGTTACCACCAAGCCAAGCGGTGGGACCGGAGTAGCCGCGTCTCAAAAAGTAATGAAAGAAATAGGTACAAGAATGGAAAAGTTCGCTAGGCTTATGGGCGTACCTTTTAAATTCAATGCGCTGTACCATTCCGGTGACCTTTCGGAACTGGACTTAACCAAATTAGACATTAAAGAAGACGAAGCACTTGCCGTTAACTGCGTCGGAGCCTTACGTTCCGTGACGGCGATTAACAACCGTCGAGATTTCTTGATTTCGTCTTTCCGCAGTTTACGGCCACGGATTATCACGGTGATAGAAGAGGAAGCCGATCTCGACGTTGGCGTCGATGGTATTGAATTTATGAGAGGGTTTCAAGAATGTTTGCGGTGGTTTAGGGTTTACTTCGAGACATTGGATGAGAGTTTCTCAAGGACGAGCAACGAACGGTTGATGCTCGAGAGAGCGGCCGGTAGGGCAATCGTGGACTTAGTGGCTTGCTCGGCGGCGGACTCGGTTGAGAGGCGGGAATCGGCGGCGCGGTGGGCTCAGCGGCTGCATGGAAACGGATTCGGTCCGGTGACGTTCAGCGATGAAGTGTGCGACGACGTTAGGGCGCTGTTGAGGAGATACAAGGAAGGATGGGCAATGACACAGAGCTCCGACGTCGCCGGAATATTCTTGACGTGGAAAGAGCAACCGGTGGTGTGGGCCAGTGCATGGAGACCTTGA 1488 49.26 MDTLFRLVNLQSEQSYNSSRTNSSSSRSSRQNQYHHYHQQDQDEECYNLLMDEEDFSSSSNSRQYYNPYHPHPPSTATPTTTATASTTPTPIDQFSFVSPSPDFNFEFSGRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFSRMTDSGDRNYRALASASEKTCSFESTRKVMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVTTKPSGGTGVAASQKVMKEIGTRMEKFARLMGVPFKFNALYHSGDLSELDLTKLDIKEDEALAVNCVGALRSVTAINNRRDFLISSFRSLRPRIITVIEEEADLDVGVDGIEFMRGFQECLRWFRVYFETLDESFSRTSNERLMLERAAGRAIVDLVACSAADSVERRESAARWAQRLHGNGFGPVTFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQPVVWASAWRP 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31566104 31567591 - CaPI482276_01g018000.1 Cam01g1800 118882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1800 495 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 64 493 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0008356(PANTHER)|GO:0009956(PANTHER)|GO:0043565(PANTHER)|GO:0045930(PANTHER)|GO:0048366(PANTHER)|GO:0055072(PANTHER)
Cam01g1800 495 MobiDBLite consensus disorder prediction 14 41 - -
Cam01g1800 495 MobiDBLite consensus disorder prediction 14 33 - -
Cam01g1800 495 Pfam GRAS domain family 116 494 IPR005202 -
Cam01g1800 495 MobiDBLite consensus disorder prediction 58 94 - -
Cam01g1800 495 ProSiteProfiles GRAS family profile. 104 494 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1800 Cam-Chr1:31566104 Cam02g1314 Cam-Chr2:25588732 5.30E-144 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51304 PF03514 GRAS 3.90E-105 CL0063 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1800 K27743 - csv:101204711 877.856