Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1801 ATGGAAAATACAAATCTTAATAGGAAGAATGAGGAGCACATGGTGTCAAGTGCTAAACAAATCAAGAAATTCTTGCAAGGCGCATTCACAATCGTTATCGTATTGTTTGAGAAAAAGCAAAGTAGTGGCGATTCCTTGTGTGGATTCCATTTTCAAGTGACAGCTGAGCCTTCCTCACGCACGCTGCCTTTGCTTTCCACATCCTCTTCCTGTCGTATCTCAGCCTTTTTTTTTCAGTTGCCACTGCCATATCAGAGCAGAATTCCAGGTGGATGCACGGTCATTGTTTACGAAACTACCTCCGCCACCTCCTCCGACCGACCTTTTTCGACGCTCTTTTCAATTTCAGTCTTTTCCGAGATGGTCACGTTGCAATCGGCGCGACCGCTGGTTCGCATGTATGAATATCGGCCGTTGATATCCCCATCTTTGGGGAGGTTGAAGCCGGCGAACGTTGCAGTGAACAATGCGATTGGACCGGAGCGGAGTTGTGGAGGTTGGGGGTTCTGTTGCGATGCGGTTACTACTAGTTTCTTACAGCCATTTAAAGCGGCGACGAGCAATTGCTCTGCGATTCACGGTAAAGGTTGCCATGACTATGAGACCTCAAGTGGTGGGAAGTCAACAAATATCGTATGGCATGATTGTCCTATTGGGAAGCCTCAAAGAGAAAAGTTGATTCAGCAGAAAGGCTGTGTCATATGGATAACTGGTCTGAGTGGTTCAGGAAAAAGCACTTTGGCATGTGCATTAAGTCAAGGCTTACATTCAAGAAGAAAACTGACCTACATCCTTGATGGTGACAATATTAGGCATGGTCTAAACAGTGATCTTAGTTTTGAACCTGAAGATCGTGCAGAAAACATACGGAGAGTTGGTGAGGTAGCAAGCCTCTTTGCAGATGCTGGGATTATTTGTATTGCTAGTTTAATATCTCCTTTTCGGAAGGATAGAGATGCCTGCCGTGCCTTGCTGGCTGAAGGTGATTTTATTGAGGTTTTCCTTGATGTACCACTTAATATATGTGAAGCCCGAGATCCAAAGGGTCTGTATAAACTGTGTAGAGCAGGAAAGATACAAGGATTCACAGGGATAGATGATCCATATGAAGAACCATTAAATTCCGAGATTGTATTGCAATATAAAGAAGGAATGTGCTCGTCCGCTATTGACATGGCGGAAAGAGTGATTTCATATTTAGAAGAGAGAGGATTCGGAAGACGACATGTCGGCAAAAAGTCAGCTTTGGACCTCGTCTGGATTTTGAGTTGGTGTGGAAGGAGGAGGAGCCCTAATTGCAGAGTTCGACGCTCTAAGGGGCAAAGGAAGATGGGGAAGAAACAGCACAGTAAAGACCGTCTGTTTATTACGAAAACTGAATGGGCCACCGAATGGGGTGGCGCCAAACCCAAGGACTCTCAAACCCCTTTCAAACGCCTTCCTTTCTATTGCTGCGCGCTTACATTTACACCCTTCGAGGACCCTGTTTGTACCGCCGATGGCAGCGTGTTCGAGATTATGAATATCATCCCTTATATTCGAAAGTATGGTAAAAATCCTGTTACTGGAGCTTCCCTGAAGCAGGAGGAACTAATTCCGCTGACATTCCACAAGAATTCTGAAGGCGAGTTCCAATGTCCTGTACTAAACAAAGTTTTTACGGAGTTCACTCACATAGTTGCTATAAAGACCACTGGAAATGTCTTCTGCTACGAGGCAGTTAAAGAATTAAATATCAAGACAAAAAACTGGAAGGAACTTCTCACTGATGAACCATTTAGTAGGGGAGATATTATAACCATTCAGAACCCTAGTGCTCTTGATAGTAAGGTTCTACTGGATTTTGATCATGTGAAAAATAGCCTAAAAGTTGATGATGAAGAACTTCAAAAAATGAAATCAGATCCAACATATAACATAAATGTGTCGGGGGACATCAAGCAGATGCTGCAGGAACTTGGAACCGAAAAGGGAAGGCAAACTGCACTTCATGGGGGAGGTGGTGGCAAGGCACAAAAAGAAAGGGCGGCTGCACTTGCTGCAATTTTAGCTGCTAGGTCACGCATTAAAGAGGATTCCAAGGAGAATGCAAAAGGAGAGGATAAACCTACGCAGGCATTTAGTATTGTGGATGCTGCATCTGCCTCAGTGCATGGAAGAAGTGCAGCTGCTGCGAAAGCTGCACCAAGTGAAAAAACTGCTGCTCGAATTGCGATGCACATGGCGGGTGAGAGGGCACCAGTAAATGCTAAAATGGTAAAGAGTCGTTACACTACTGGTGCTGCATCCCGGTCCTTCACATCTACATCTTACGACCCTGTTACAAAGAATGAACATGAATATATCAAGGTTGAGAAAAACCCAAAGAAGAAAGGATATGTACAGTTGCATACAACACATGGAGATTTGAATATTGAACTACATTGTGATATTACTCCAAGAACATGCGAGAATTTCATCACACTTTGTGAAAATGGCTACTACAATGGAGTTGCTTTTCATAGAAGTATTAGGAATTTTATGATTCAAGGTGGTGATCCAACTGGTACTGGGAGAGGGGGTGAATCTATATGGGGAAAGCCCTTCAAAGATGAACTTAACTCCAAGCTGCTTCATTCTGGAAGGGGTGTTGTCAGTATGGCAAATAGTGGTCCACACACTAATGGTTCCCAGTTCTTTATTCTTTACAAATCTGCCAATCACTTAAACTTCAAGCATACCGTATTTGGCGGTGTTGTTGGTGGGTTGACTGCTTTGGCAGCAATGGAAAAGGTTCCTGTTGATGACAATGATCGGCCTCTGGAGGAGATCAAGATAACAAGTGTCACAGTTTTTGTGAATCCATACTCGGAACCTGATGAAGAGGAAGAAAAGCAAAAAGACGAGAAGAATGTGGAGGATGAAGAAAACGATAAGGTTGGATCATGGTATAGTAACCCAGGCACCGGGGTAGCTGAAGATGGAGCTGCTGGTGGCGGTGTAGGGAAGTATTTGAAAGCAAGAAATGCCCAATCCAAACCCCCAGCTGTTGATAGTAGTCTAAAACAAACTACCTCGACCAAGAAAAGAACAGCTGCAGGAGAATTCAAAGACTTCTCTTCTTGGTAA 3108 43.89 MENTNLNRKNEEHMVSSAKQIKKFLQGAFTIVIVLFEKKQSSGDSLCGFHFQVTAEPSSRTLPLLSTSSSCRISAFFFQLPLPYQSRIPGGCTVIVYETTSATSSDRPFSTLFSISVFSEMVTLQSARPLVRMYEYRPLISPSLGRLKPANVAVNNAIGPERSCGGWGFCCDAVTTSFLQPFKAATSNCSAIHGKGCHDYETSSGGKSTNIVWHDCPIGKPQREKLIQQKGCVIWITGLSGSGKSTLACALSQGLHSRRKLTYILDGDNIRHGLNSDLSFEPEDRAENIRRVGEVASLFADAGIICIASLISPFRKDRDACRALLAEGDFIEVFLDVPLNICEARDPKGLYKLCRAGKIQGFTGIDDPYEEPLNSEIVLQYKEGMCSSAIDMAERVISYLEERGFGRRHVGKKSALDLVWILSWCGRRRSPNCRVRRSKGQRKMGKKQHSKDRLFITKTEWATEWGGAKPKDSQTPFKRLPFYCCALTFTPFEDPVCTADGSVFEIMNIIPYIRKYGKNPVTGASLKQEELIPLTFHKNSEGEFQCPVLNKVFTEFTHIVAIKTTGNVFCYEAVKELNIKTKNWKELLTDEPFSRGDIITIQNPSALDSKVLLDFDHVKNSLKVDDEELQKMKSDPTYNINVSGDIKQMLQELGTEKGRQTALHGGGGGKAQKERAAALAAILAARSRIKEDSKENAKGEDKPTQAFSIVDAASASVHGRSAAAAKAAPSEKTAARIAMHMAGERAPVNAKMVKSRYTTGAASRSFTSTSYDPVTKNEHEYIKVEKNPKKKGYVQLHTTHGDLNIELHCDITPRTCENFITLCENGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDELNSKLLHSGRGVVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGGVVGGLTALAAMEKVPVDDNDRPLEEIKITSVTVFVNPYSEPDEEEEKQKDEKNVEDEENDKVGSWYSNPGTGVAEDGAAGGGVGKYLKARNAQSKPPAVDSSLKQTTSTKKRTAAGEFKDFSSW 1035
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31574558 31584109 - CaPI482276_01g018010.1 Cam01g1801 118883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1801 1035 CDD RING-Ubox_PPIL2 481 553 IPR026951 -
Cam01g1801 1035 SMART Ubox_2 482 544 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam01g1801 1035 FunFam Peptidyl-prolyl cis-trans isomerase 2 484 539 - -
Cam01g1801 1035 Gene3D - 773 958 IPR029000 -
Cam01g1801 1035 CDD cyclophilin_RING 793 951 - -
Cam01g1801 1035 SUPERFAMILY Cyclophilin-like 793 959 IPR029000 -
Cam01g1801 1035 MobiDBLite consensus disorder prediction 947 1035 - -
Cam01g1801 1035 MobiDBLite consensus disorder prediction 951 973 - -
Cam01g1801 1035 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 828 845 IPR020892 GO:0003755(InterPro)|GO:0006457(InterPro)
Cam01g1801 1035 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 229 403 IPR027417 -
Cam01g1801 1035 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 797 944 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cam01g1801 1035 Coils Coil 951 971 - -
Cam01g1801 1035 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 891 903 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cam01g1801 1035 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 807 822 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cam01g1801 1035 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 904 919 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cam01g1801 1035 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 833 845 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cam01g1801 1035 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 876 891 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cam01g1801 1035 FunFam Peptidyl-prolyl cis-trans isomerase cyp65 774 958 - -
Cam01g1801 1035 NCBIfam adenylyl-sulfate kinase 213 384 IPR002891 GO:0000103(InterPro)|GO:0004020(InterPro)|GO:0005524(InterPro)
Cam01g1801 1035 ProSiteProfiles U-box domain profile. 478 551 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam01g1801 1035 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 483 539 IPR013083 -
Cam01g1801 1035 MobiDBLite consensus disorder prediction 1006 1023 - -
Cam01g1801 1035 Hamap Adenylyl-sulfate kinase [cysC]. 229 404 IPR002891 GO:0000103(InterPro)|GO:0004020(InterPro)|GO:0005524(InterPro)
Cam01g1801 1035 SUPERFAMILY RING/U-box 480 547 - -
Cam01g1801 1035 Pfam Adenylylsulphate kinase 230 379 - -
Cam01g1801 1035 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 793 944 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cam01g1801 1035 CDD APSK 233 379 IPR002891 GO:0000103(InterPro)|GO:0004020(InterPro)|GO:0005524(InterPro)
Cam01g1801 1035 Gene3D - 201 405 IPR027417 -
Cam01g1801 1035 PANTHER BIFUNCTIONAL 3'-PHOSPHOADENOSINE 5'-PHOSPHOSULFATE SYNTHASE 204 405 - GO:0000103(PANTHER)|GO:0004020(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1801 Cam-Chr1:31574558 Cam10g1339 Cam-Chr10:26930726 1.30E-83 dispersed
Cam01g1297 Cam-Chr1:24527309 Cam01g1801 Cam-Chr1:31574558 4.80E-41 transposed
Cam05g0242 Cam-Chr5:2387862 Cam01g1801 Cam-Chr1:31574558 1.80E-48 transposed
Cam05g1971 Cam-Chr5:28578738 Cam01g1801 Cam-Chr1:31574558 1.30E-37 transposed
Cam10g1838 Cam-Chr10:32487673 Cam01g1801 Cam-Chr1:31574558 3.90E-43 transposed
Cam01g1801 Cam-Chr1:31574558 Cam10g1000 Cam-Chr10:22273155 2.60E-84 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1801 K10598 - csv:101204462 1070.07