Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1825 ATGAGCAGTAGAGTGATAGGGAGAAACGGCGCCGTATGTGAACATGGTGGATTTTATTCACCATTATCTGCCATGCCACTCAAGTCAGATGGCTCAATTTGTTCAATGGAAGCTCTCAGCAGGCAGCATCCACAAGTGGTGAGTAGCTCTACTCCAAAACTAGAGGATTTCTTTGGTGGTGCAACTATGGGGTCCCATCACTATGAAAGCAATGACAGGGAAGCTATGGCTCTCAGCCTAGACAGCATATTTTGCCATCAAAACCCAACTCATGAGCCCAACAACCAAACCTTTGCACATTTCTCATCCTTAAGGAGCCGCGAACTGATGCTTCAAGACTCGAAGGTAATCCTGCCTGATGGGTGCAATCTGCAGCAGCAGCAGCAACACCATCCAGCAGTAGCCCAGAGTGATATTTCTAGTATGAAGAATTGGGCTGTTCCTAGAAACTATGCTGCCACTAACAATGGTTCGTTCGAGCAGAAGATGGTGAATTGCATGAGTGAAAATAGTGGTGAATCTGGTCCCATTAATGCCATGGCTTATGGAGATTTACAGTCATTGAGCTTGTCCATGACTATGAGCCCCAGCTCTCAGTCAAGCTGTGTCACAACCACACAGCATGTCTCACCTGCCATGGCTGACTGTTCTGCCATGGATACAAAGAAAAGAGGCCATGAGAAGGTTGATCAGAAGCAAATTGTTCATAGGAAGTCTTTAGATACCTTTGGACAGAGAACCTCACAGTATAGAGGGGTTACAAGGCACAGATGGACGGGTAGGTATGAAGCACATTTATGGGACAACAGTTGCAAGAAAGAAGGTCAAAGCAGGAAGGGAAGGCAAGTGTACCTTGGAGGTTATGATATGGAAGAAAAAGCCGCTAGAGCTTATGATCTTGCTGCACTCAAGTATTGGGGACCCTCCACCCACATTAACTTTCCTTTGGAAAACTATCAGAAAGAATTAGAGGAAATGAAAAACATGAGCAGGCAGGAATATGTCGCTCACCTGAGAAGAAGAAGCAGCGGGTTCTCAAGAGGGGCCTCGATATACAGAGGTGTAACAAGGCATCATCAACATGGAAGATGGCAGGCTCGGATTGGCCGAGTTGCTGGTAACAAAGATCTGTATCTTGGGACATTCAGTACTCAAGAGGAAGCTGCCGAGGCTTATGACATAGCAGCCATAAAATTTCGAGGAATGAATGCTGTTACTAATTTCGATATCACGAGGTATGACGTGGAGCGGATTATTGCAAGCAATACCCTCCTTAGTGGCGATCTAGCTAAGAGAAAGCAGCAGCCAGAGTTTGATAATGAATCACTCAGACGAAGCCCTACTCACAACAGCAATTCAGAAGCTATGCCTCTGCCCTCACAGAATAGCAGTCAAAGTGAATCAGACTGGAAAATGGCTCTTTATCAGTCATCCCAGCAGCTCGTTCCGAAGCAACGAATGTTGTCTGCAATGAACGATGATGGATCACAAATTGGAGTCGAAGATTCGGCCAGAATGGGAGCTCATTTCTCCAATGCATCTTCAATGGTGACTAGCTGCAGCTTGAGCAGCTCAAGGGAGGAGAGTCCAGACAAGACAAGCCTTTCGATGGTGTTTGGAATGCCTCAATCGACATCTAAGCCATTTGCTGCCTCGGCTAGTAATATGAACACCTCCTGGATTGCATCTGCCCAACAGTTAAGGGCAGCAAATTGTATGAGCCAGTTGCCAGTTTTTGCTGCCTGGACTGATACTTAA 1758 46.19 MSSRVIGRNGAVCEHGGFYSPLSAMPLKSDGSICSMEALSRQHPQVVSSSTPKLEDFFGGATMGSHHYESNDREAMALSLDSIFCHQNPTHEPNNQTFAHFSSLRSRELMLQDSKVILPDGCNLQQQQQHHPAVAQSDISSMKNWAVPRNYAATNNGSFEQKMVNCMSENSGESGPINAMAYGDLQSLSLSMTMSPSSQSSCVTTTQHVSPAMADCSAMDTKKRGHEKVDQKQIVHRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQKELEEMKNMSRQEYVAHLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGMNAVTNFDITRYDVERIIASNTLLSGDLAKRKQQPEFDNESLRRSPTHNSNSEAMPLPSQNSSQSESDWKMALYQSSQQLVPKQRMLSAMNDDGSQIGVEDSARMGAHFSNASSMVTSCSLSSSREESPDKTSLSMVFGMPQSTSKPFAASASNMNTSWIASAQQLRAANCMSQLPVFAAWTDT 585
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 31775597 31779657 + CaPI482276_01g018250.1 Cam01g1825 118907
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1825 585 SMART rav1_2 351 415 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g1825 585 SMART rav1_2 249 321 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g1825 585 ProSiteProfiles AP2/ERF domain profile. 351 409 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g1825 585 Pfam AP2 domain 352 402 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g1825 585 Pfam AP2 domain 249 307 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g1825 585 Coils Coil 316 336 - -
Cam01g1825 585 PRINTS Ethylene responsive element binding protein signature 250 261 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g1825 585 PRINTS Ethylene responsive element binding protein signature 391 411 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g1825 585 FunFam AP2-like ethylene-responsive transcription factor 350 411 - -
Cam01g1825 585 SUPERFAMILY DNA-binding domain 248 317 IPR016177 GO:0003677(InterPro)
Cam01g1825 585 CDD AP2 248 315 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g1825 585 Gene3D AP2/ERF domain 248 317 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g1825 585 Gene3D AP2/ERF domain 351 411 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g1825 585 FunFam AP2-like ethylene-responsive transcription factor ANT 248 317 - -
Cam01g1825 585 CDD AP2 350 411 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g1825 585 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 184 477 - -
Cam01g1825 585 MobiDBLite consensus disorder prediction 430 468 - -
Cam01g1825 585 MobiDBLite consensus disorder prediction 445 468 - -
Cam01g1825 585 ProSiteProfiles AP2/ERF domain profile. 249 315 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g1825 585 SUPERFAMILY DNA-binding domain 350 410 IPR016177 GO:0003677(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1825 Cam-Chr1:31775597 Cam07g1158 Cam-Chr7:25946112 2.70E-102 dispersed
Cam02g2411 Cam-Chr2:36584015 Cam01g1825 Cam-Chr1:31775597 4.90E-91 transposed
Cam06g1485 Cam-Chr6:26263428 Cam01g1825 Cam-Chr1:31775597 1.00E-94 transposed
Cam10g0726 Cam-Chr10:12128239 Cam01g1825 Cam-Chr1:31775597 5.10E-86 transposed
Cam01g1825 Cam-Chr1:31775597 Cam05g2850 Cam-Chr5:35563139 3.00E-130 wgd
Cam01g1825 Cam-Chr1:31775597 Cam08g2145 Cam-Chr8:26838530 4.80E-152 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51309 PF00847 AP2 1.10E-13 CL0081 Cam TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1825 K09285 - csv:101203323 1055.82