Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam01g1825 | ATGAGCAGTAGAGTGATAGGGAGAAACGGCGCCGTATGTGAACATGGTGGATTTTATTCACCATTATCTGCCATGCCACTCAAGTCAGATGGCTCAATTTGTTCAATGGAAGCTCTCAGCAGGCAGCATCCACAAGTGGTGAGTAGCTCTACTCCAAAACTAGAGGATTTCTTTGGTGGTGCAACTATGGGGTCCCATCACTATGAAAGCAATGACAGGGAAGCTATGGCTCTCAGCCTAGACAGCATATTTTGCCATCAAAACCCAACTCATGAGCCCAACAACCAAACCTTTGCACATTTCTCATCCTTAAGGAGCCGCGAACTGATGCTTCAAGACTCGAAGGTAATCCTGCCTGATGGGTGCAATCTGCAGCAGCAGCAGCAACACCATCCAGCAGTAGCCCAGAGTGATATTTCTAGTATGAAGAATTGGGCTGTTCCTAGAAACTATGCTGCCACTAACAATGGTTCGTTCGAGCAGAAGATGGTGAATTGCATGAGTGAAAATAGTGGTGAATCTGGTCCCATTAATGCCATGGCTTATGGAGATTTACAGTCATTGAGCTTGTCCATGACTATGAGCCCCAGCTCTCAGTCAAGCTGTGTCACAACCACACAGCATGTCTCACCTGCCATGGCTGACTGTTCTGCCATGGATACAAAGAAAAGAGGCCATGAGAAGGTTGATCAGAAGCAAATTGTTCATAGGAAGTCTTTAGATACCTTTGGACAGAGAACCTCACAGTATAGAGGGGTTACAAGGCACAGATGGACGGGTAGGTATGAAGCACATTTATGGGACAACAGTTGCAAGAAAGAAGGTCAAAGCAGGAAGGGAAGGCAAGTGTACCTTGGAGGTTATGATATGGAAGAAAAAGCCGCTAGAGCTTATGATCTTGCTGCACTCAAGTATTGGGGACCCTCCACCCACATTAACTTTCCTTTGGAAAACTATCAGAAAGAATTAGAGGAAATGAAAAACATGAGCAGGCAGGAATATGTCGCTCACCTGAGAAGAAGAAGCAGCGGGTTCTCAAGAGGGGCCTCGATATACAGAGGTGTAACAAGGCATCATCAACATGGAAGATGGCAGGCTCGGATTGGCCGAGTTGCTGGTAACAAAGATCTGTATCTTGGGACATTCAGTACTCAAGAGGAAGCTGCCGAGGCTTATGACATAGCAGCCATAAAATTTCGAGGAATGAATGCTGTTACTAATTTCGATATCACGAGGTATGACGTGGAGCGGATTATTGCAAGCAATACCCTCCTTAGTGGCGATCTAGCTAAGAGAAAGCAGCAGCCAGAGTTTGATAATGAATCACTCAGACGAAGCCCTACTCACAACAGCAATTCAGAAGCTATGCCTCTGCCCTCACAGAATAGCAGTCAAAGTGAATCAGACTGGAAAATGGCTCTTTATCAGTCATCCCAGCAGCTCGTTCCGAAGCAACGAATGTTGTCTGCAATGAACGATGATGGATCACAAATTGGAGTCGAAGATTCGGCCAGAATGGGAGCTCATTTCTCCAATGCATCTTCAATGGTGACTAGCTGCAGCTTGAGCAGCTCAAGGGAGGAGAGTCCAGACAAGACAAGCCTTTCGATGGTGTTTGGAATGCCTCAATCGACATCTAAGCCATTTGCTGCCTCGGCTAGTAATATGAACACCTCCTGGATTGCATCTGCCCAACAGTTAAGGGCAGCAAATTGTATGAGCCAGTTGCCAGTTTTTGCTGCCTGGACTGATACTTAA | 1758 | 46.19 | MSSRVIGRNGAVCEHGGFYSPLSAMPLKSDGSICSMEALSRQHPQVVSSSTPKLEDFFGGATMGSHHYESNDREAMALSLDSIFCHQNPTHEPNNQTFAHFSSLRSRELMLQDSKVILPDGCNLQQQQQHHPAVAQSDISSMKNWAVPRNYAATNNGSFEQKMVNCMSENSGESGPINAMAYGDLQSLSLSMTMSPSSQSSCVTTTQHVSPAMADCSAMDTKKRGHEKVDQKQIVHRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQKELEEMKNMSRQEYVAHLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGMNAVTNFDITRYDVERIIASNTLLSGDLAKRKQQPEFDNESLRRSPTHNSNSEAMPLPSQNSSQSESDWKMALYQSSQQLVPKQRMLSAMNDDGSQIGVEDSARMGAHFSNASSMVTSCSLSSSREESPDKTSLSMVFGMPQSTSKPFAASASNMNTSWIASAQQLRAANCMSQLPVFAAWTDT | 585 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 31775597 | 31779657 | + | CaPI482276_01g018250.1 | Cam01g1825 | 118907 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam01g1825 | 585 | SMART | rav1_2 | 351 | 415 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam01g1825 | 585 | SMART | rav1_2 | 249 | 321 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam01g1825 | 585 | ProSiteProfiles | AP2/ERF domain profile. | 351 | 409 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam01g1825 | 585 | Pfam | AP2 domain | 352 | 402 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam01g1825 | 585 | Pfam | AP2 domain | 249 | 307 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam01g1825 | 585 | Coils | Coil | 316 | 336 | - | - | |
Cam01g1825 | 585 | PRINTS | Ethylene responsive element binding protein signature | 250 | 261 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam01g1825 | 585 | PRINTS | Ethylene responsive element binding protein signature | 391 | 411 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam01g1825 | 585 | FunFam | AP2-like ethylene-responsive transcription factor | 350 | 411 | - | - | |
Cam01g1825 | 585 | SUPERFAMILY | DNA-binding domain | 248 | 317 | IPR016177 | GO:0003677(InterPro) | |
Cam01g1825 | 585 | CDD | AP2 | 248 | 315 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam01g1825 | 585 | Gene3D | AP2/ERF domain | 248 | 317 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam01g1825 | 585 | Gene3D | AP2/ERF domain | 351 | 411 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam01g1825 | 585 | FunFam | AP2-like ethylene-responsive transcription factor ANT | 248 | 317 | - | - | |
Cam01g1825 | 585 | CDD | AP2 | 350 | 411 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam01g1825 | 585 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 184 | 477 | - | - | |
Cam01g1825 | 585 | MobiDBLite | consensus disorder prediction | 430 | 468 | - | - | |
Cam01g1825 | 585 | MobiDBLite | consensus disorder prediction | 445 | 468 | - | - | |
Cam01g1825 | 585 | ProSiteProfiles | AP2/ERF domain profile. | 249 | 315 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam01g1825 | 585 | SUPERFAMILY | DNA-binding domain | 350 | 410 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam01g1825 | Cam-Chr1:31775597 | Cam07g1158 | Cam-Chr7:25946112 | 2.70E-102 | dispersed | |
Cam02g2411 | Cam-Chr2:36584015 | Cam01g1825 | Cam-Chr1:31775597 | 4.90E-91 | transposed | |
Cam06g1485 | Cam-Chr6:26263428 | Cam01g1825 | Cam-Chr1:31775597 | 1.00E-94 | transposed | |
Cam10g0726 | Cam-Chr10:12128239 | Cam01g1825 | Cam-Chr1:31775597 | 5.10E-86 | transposed | |
Cam01g1825 | Cam-Chr1:31775597 | Cam05g2850 | Cam-Chr5:35563139 | 3.00E-130 | wgd | |
Cam01g1825 | Cam-Chr1:31775597 | Cam08g2145 | Cam-Chr8:26838530 | 4.80E-152 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51309 | PF00847 | AP2 | 1.10E-13 | CL0081 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam01g1825 | K09285 | - | csv:101203323 | 1055.82 |