Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1845 ATGTGGTTTCTTCTTGTTTTTGTGCTTCTTCAACTTCACTTTTCCCCTTCCTTCTCTGCCTTCCTACCCGAATCCCAAGCCCTTCTCTCTCTCAAATCCTCCATTTCTTACGACCCTCGTTCTTCTCTCTCCTCCTGGAACGCCGTCGCCGCCCACTGTACCTGGTTCGGCGTCACATGCGACGCCCGCCGCCACGTCGTTGCCCTCCACCTCTCTTCCCTTGACCTCGCCGGCACCATTTCCCCTGACCTTGCGTCTCTTCGCTTTCTCACTAATGTTTCCTTCGGCCTCAACAAATTTTCCGGCGGAATCCCACCGGAGATTGCCTCCATTTCTTCTCTCCAGTATCTTAATCTCTCTAGTAACGTCCTCAATGGGTCGATTCCTCGCGAGTTTTCGCAGCTCAAAAACTTACAGGTTCTTGATGTTTATAACAATAACCTGACCGGTGATTTTCCCAGAGTGGTCACTGAAATGACCAACCTCCGCCATTTGCACCTTGGGGGAAATTTCTTCACCGGTCGGATTCCTCCGGAGGTCGGACGGTTGCAGTTCTTGGAGTTTTTGGCGATTCACGGCAATGACCTTGAAGGTCCAATACCGCCGGCGATCGGAAACTTGACGAAGCTTCGGGAACTTTACATTGGTTACTACAACATCTTCGTCGGTGGAATACCGGCGACGATAGGGAATTTGTCGGAGTTAGTTCGGTTGGATGCCGCGAGCTGTGGGTTGACCGGAAAGTTTCCGCCGGAGCTGGGAAAGTTGCAGAAACTCACTGAACTGTACCTTCAACAAAATGCTCTGTCTGGACCTTTGCTGGAGCTAGGAGGATTGAAGAGCATAGAAGAGTTGGATATATCATGCAATATGCTTGTTGGTGAAATACCCATCTCTTTTGCAGAGTTCAAGAACTTGAGGCTGTTGCAACTTTTCGACAACAAGCTCTCCGGAGAGATTCCGGGATTCATGGGCGACCTCCCAAAGCTGGAGATATTGCAATTATGGAACAACAATTTCACAGGTTCGATCCCTCGAAATTTGGGGAAGAACGGAATGCTTCGGACTCTCGACCTTGCTTTCAACCACTTGACAGGTACGGTTCCTCCTGAAATCTGCCATGGGAATAAGCTTGAAGTTTTGATCGCCATGGGCAATTCCTTGTCTGGTTCCATCCCAGAATCATTGGGGAATTGTATTTCACTTAAGCGTATACTTCTGTGGGGAAACGCTCTTAATGGATCAATTCCAAAGAGGCTTTTGAGTTTGCCAAATCTCACTCAAGTTGATTTGCAAGACAATTTTCTCTCCGGAGAATTTCCCATTACCAATTCAGTCTCGGTTAACCTTCTTCAGATAAGTTTATCTAATAATATGCTCTCTGGATCCTTGCCACCCACCATCGGCAGCCTTGTGGCCGTCCAGAAGCTTCTTCTTGACCGGAATAAGTTTTCTGGTCAGATTCCTTCAAATATTGGGAGATTACAGCAACTATCTCGGATAAATTTCAGCCAGAATAAGTTCTCTGGTACAATTGTGCCAGAGATAAGTGAGTGTAAGCACTTAATATTTCTTGATCTTAGTGGAAATGAGCTTTCTGGTGAAATCCCCGACCATATTACCAACATGAAGTTATTGAATTATATGAATCTCTCAAGAAACCATTTAGTTGGGCCCATTCCTGCTTCAATAGTTAACATGCAGAGCTTAACCTCTGTGGACTTTTCATATAACAATCTCTCTGGTTTGGTTCTGGGAACTGGACAATTTGGTTACTTCAATTACACATCATTTTTAGGCAATCCTTATCTCTGTGGTGCATATTTGGGGCCTTGCAAAGATGGGGTTCTTGCTAGCAATCACCAAGAACATATGAAAGGCTCTCTCTCAACTCCTCTCAGGCTCCTGCTAGTTGTTGGTTTTTTTTTTGGTTTAGTTGCACTGACAGTTGCATTGATCTTCAAAGTTCGGTGGTTTAAGAGAGCAAGGGAGTCTAGAGGATGGAGATTAACAGCCTTCCAACGGCTGGGTTTCTCGGTTGATGAGATCTTGGATTGCCTTAAGAAGGAAAATCTTATTGCAAAAGGAGGTTATGGCACAGTATATACAGGAGTGATGCCAAGTGGTGATCAGATCACTCTGAAAAGGCTTCCAAAGATGAGCAATGGGTGTTCTCGTGACCACGGATTCAATGCCGAGATTCAAGCTCTTGGGAGGATTCGACACCGTCACATTGTTAGATTATTGGGCCTCTGTTCAAACCATGAAACTAATCTTTTGGTATTTGAGTACATGCCTAATGGGAGTCTCTATGAGGTTCTCCATGGCAAGAAAGGAGGTCACTTGCTTTGGGATACAAGGTACAAGATAGCCATTGGAACTGCGAATGGACTCTGCTATCTTCACCACCATTGCTCGCCGCCCATTGTTCATCGAAATGTGAAATCAAACAACATTATGCTAGACACCAACTTTGAAGCTCAGATTGCCAATTCCGGGCTTGCAAAGTTCTTAGAAGATTCAAGGACATCGGATAAGTCAGCTACCGAGCCAGAGCATGCCGACACACAGAATGCCGATGAGAAGTGGGATGTATATAGCTTCGGTGTCATCCTATTGGAACTCGTTAGCGGTAGGAATCCAGTCGGAGAACTAAGCGACAGTGTCGACATAGTTCAATGGGTTAGAAACATGTCAGTTTCAGAAAAGGAAGAAATACATAAAATCGTCGATCAAAGACTCTCCTCCGTCCCCCTTGACGAAGTGATGCACGTGCTCAATGTTGCCATGCTGTGCACTGAAGAAGAGGCTGCAAAGCGTCCCACGATGCGGGAAGTCGTCCGGATCTTAACCGAGCATCAGCAACAATCATTCTCGAAGGAGAATGAAGATACATAA 2898 45.82 MWFLLVFVLLQLHFSPSFSAFLPESQALLSLKSSISYDPRSSLSSWNAVAAHCTWFGVTCDARRHVVALHLSSLDLAGTISPDLASLRFLTNVSFGLNKFSGGIPPEIASISSLQYLNLSSNVLNGSIPREFSQLKNLQVLDVYNNNLTGDFPRVVTEMTNLRHLHLGGNFFTGRIPPEVGRLQFLEFLAIHGNDLEGPIPPAIGNLTKLRELYIGYYNIFVGGIPATIGNLSELVRLDAASCGLTGKFPPELGKLQKLTELYLQQNALSGPLLELGGLKSIEELDISCNMLVGEIPISFAEFKNLRLLQLFDNKLSGEIPGFMGDLPKLEILQLWNNNFTGSIPRNLGKNGMLRTLDLAFNHLTGTVPPEICHGNKLEVLIAMGNSLSGSIPESLGNCISLKRILLWGNALNGSIPKRLLSLPNLTQVDLQDNFLSGEFPITNSVSVNLLQISLSNNMLSGSLPPTIGSLVAVQKLLLDRNKFSGQIPSNIGRLQQLSRINFSQNKFSGTIVPEISECKHLIFLDLSGNELSGEIPDHITNMKLLNYMNLSRNHLVGPIPASIVNMQSLTSVDFSYNNLSGLVLGTGQFGYFNYTSFLGNPYLCGAYLGPCKDGVLASNHQEHMKGSLSTPLRLLLVVGFFFGLVALTVALIFKVRWFKRARESRGWRLTAFQRLGFSVDEILDCLKKENLIAKGGYGTVYTGVMPSGDQITLKRLPKMSNGCSRDHGFNAEIQALGRIRHRHIVRLLGLCSNHETNLLVFEYMPNGSLYEVLHGKKGGHLLWDTRYKIAIGTANGLCYLHHHCSPPIVHRNVKSNNIMLDTNFEAQIANSGLAKFLEDSRTSDKSATEPEHADTQNADEKWDVYSFGVILLELVSGRNPVGELSDSVDIVQWVRNMSVSEKEEIHKIVDQRLSSVPLDEVMHVLNVAMLCTEEEAAKRPTMREVVRILTEHQQQSFSKENEDT 965
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 31961259 31964381 - CaPI482276_01g018450.1 Cam01g1845 118927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1845 965 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 178 273 - -
Cam01g1845 965 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 22 177 - -
Cam01g1845 965 SMART LRR_sd22_2 207 234 - -
Cam01g1845 965 SMART LRR_sd22_2 135 164 - -
Cam01g1845 965 SMART LRR_sd22_2 256 287 - -
Cam01g1845 965 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 765 958 - -
Cam01g1845 965 SMART LRR_typ_2 111 135 IPR003591 -
Cam01g1845 965 SMART LRR_typ_2 471 495 IPR003591 -
Cam01g1845 965 SMART LRR_typ_2 256 279 IPR003591 -
Cam01g1845 965 SMART LRR_typ_2 352 375 IPR003591 -
Cam01g1845 965 SMART LRR_typ_2 567 590 IPR003591 -
Cam01g1845 965 SMART LRR_typ_2 327 351 IPR003591 -
Cam01g1845 965 SMART LRR_typ_2 159 183 IPR003591 -
Cam01g1845 965 Gene3D Ribonuclease Inhibitor 177 275 IPR032675 -
Cam01g1845 965 Gene3D Ribonuclease Inhibitor 23 176 IPR032675 -
Cam01g1845 965 Pfam Leucine rich repeat N-terminal domain 24 61 IPR013210 -
Cam01g1845 965 Gene3D Phosphorylase Kinase; domain 1 659 764 - -
Cam01g1845 965 Pfam Protein tyrosine and serine/threonine kinase 688 950 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam01g1845 965 Pfam Leucine rich repeat 113 170 IPR001611 GO:0005515(InterPro)
Cam01g1845 965 Gene3D Ribonuclease Inhibitor 276 351 IPR032675 -
Cam01g1845 965 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 331 616 - -
Cam01g1845 965 SUPERFAMILY RNI-like 69 413 - -
Cam01g1845 965 ProSiteProfiles Protein kinase domain profile. 687 958 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g1845 965 SUPERFAMILY Protein kinase-like (PK-like) 681 950 IPR011009 -
Cam01g1845 965 Gene3D Ribonuclease Inhibitor 352 616 IPR032675 -
Cam01g1845 965 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 656 764 - -
Cam01g1845 965 Pfam Leucine Rich Repeat 521 543 IPR001611 GO:0005515(InterPro)
Cam01g1845 965 Pfam Leucine Rich Repeat 354 374 IPR001611 GO:0005515(InterPro)
Cam01g1845 965 Pfam Leucine Rich Repeat 281 301 IPR001611 GO:0005515(InterPro)
Cam01g1845 965 Pfam Leucine Rich Repeat 329 350 IPR001611 GO:0005515(InterPro)
Cam01g1845 965 Pfam Leucine Rich Repeat 449 471 IPR001611 GO:0005515(InterPro)
Cam01g1845 965 Pfam Leucine Rich Repeat 377 399 IPR001611 GO:0005515(InterPro)
Cam01g1845 965 SUPERFAMILY L domain-like 351 611 - -
Cam01g1845 965 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 8 953 IPR050647 -
Cam01g1845 965 Gene3D Transferase(Phosphotransferase) domain 1 765 965 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1845 Cam-Chr1:31961259 Cam10g0790 Cam-Chr10:15046422 9.10E-23 dispersed
Cam01g1845 Cam-Chr1:31961259 Cam01g1846 Cam-Chr1:31977690 3.40E-25 tandem
Cam01g1845 Cam-Chr1:31961259 Cam11g1509 Cam-Chr11:27951395 7.20E-60 wgd
Cam01g1845 Cam-Chr1:31961259 Cam08g1656 Cam-Chr8:22799268 3.10E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84895 PF07714 PK_Tyr_Ser-Thr 4.60E-37 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1845 - - - 0.0