Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1862 ATGGAGCTCAGTCAACATGGTTTCTTAGAAGAGTTATTAGCTTCAACGCCTTGGACCTCTTCATACTCAAATGGTTTCAATGATTTCTTCCAAAATGGATGGAATTTCAGCACTTTTGATGAGAATCCCCAAATGGGTACATCTAATTTCCCTAATTTTCCCGGTATCCAAACAGCTAATGATTTTTCTTTCGCCGATCAACAGCTCTACAGCAATTTTCTCGAAGGGTTTGCAATGCCGGAGCTTGACTCCTCATCGTACACTAAGAACAACGAAACCTCACCATTTATTTCTCAAGAAGAAATGAGTAATAAGAACAGTGGTTACCCTCCGGCGGCGATGGAGGAGGAAGAACTTGGTTTTATAGAGATTGAAACAGCTCCAAGTGTTTGCAAAGTGGAAATGGAGCAAATGGGTTTGCGTGAAACTAATGGTTCTAAAATGGGTGTGGCAGAATTACGGAAAAGAAGCAGCATCAAGGCTAAAAAGATTGAAGGACAGCCCTCAAAGAATTTAATGGCGGAAAGAAGAAGAAGGAAGCGGTTGAATGATCGGCTTTCAATGCTCAGAGCCATAGTCCCTAAAATAAGCAAGATGGATAGAACGTCTATACTTGGAGACACAATCGATTATGTGAAAGAGCTGATAGAAAGAATCAATAACTTGAAAGAAGAAGAGGAAATTGGTTTAGATTCAAATCACGTGGGCTTCTTCAATGGGATCTCCAAGGAAGGGAAGTCCAACGAAGTTCAAGTGAGGAATTCCCCAAAGTTCGAAGTTGAAAGGACGGAGAGGGAGACTCGAATCGACATTTGCTGTGCAACGAGGCCAGGGTTATTGCTGTCTACAGTCAACACATTAGAAGCATTGGGGCTTGAGATTCAACAGTGTGTTATTAGCTGTTTCAATGATTTTTCAATGCAAGCTTCTTGTTCAGAGGGAAGTGCTCAGAAAGCTGTGGCAAGTTCTGATGATATAAAGGAATCACTGTTCAGAAATGCAGGATATGGAGGGAAGTGCTTGTAG 1026 41.62 MELSQHGFLEELLASTPWTSSYSNGFNDFFQNGWNFSTFDENPQMGTSNFPNFPGIQTANDFSFADQQLYSNFLEGFAMPELDSSSYTKNNETSPFISQEEMSNKNSGYPPAAMEEEELGFIEIETAPSVCKVEMEQMGLRETNGSKMGVAELRKRSSIKAKKIEGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYVKELIERINNLKEEEEIGLDSNHVGFFNGISKEGKSNEVQVRNSPKFEVERTERETRIDICCATRPGLLLSTVNTLEALGLEIQQCVISCFNDFSMQASCSEGSAQKAVASSDDIKESLFRNAGYGGKCL 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32156809 32158134 - CaPI482276_01g018620.1 Cam01g1862 118944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1862 341 Pfam Helix-loop-helix DNA-binding domain 173 215 IPR011598 GO:0046983(InterPro)
Cam01g1862 341 SMART finulus 172 221 IPR011598 GO:0046983(InterPro)
Cam01g1862 341 Pfam Plant bHLH transcription factor, ACT-like domain 259 330 IPR054502 -
Cam01g1862 341 Gene3D - 167 233 IPR036638 GO:0046983(InterPro)
Cam01g1862 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 228 IPR036638 GO:0046983(InterPro)
Cam01g1862 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 215 IPR011598 GO:0046983(InterPro)
Cam01g1862 341 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 109 336 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1862 Cam-Chr1:32156809 Cam03g0398 Cam-Chr3:5118781 2.20E-32 dispersed
Cam02g0427 Cam-Chr2:4987763 Cam01g1862 Cam-Chr1:32156809 2.30E-17 transposed
Cam01g1862 Cam-Chr1:32156809 Cam11g1503 Cam-Chr11:27865081 4.30E-68 wgd
Cam01g1862 Cam-Chr1:32156809 Cam08g1649 Cam-Chr8:22691664 3.40E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51316 PF00010 HLH 2.10E-09 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1862 - - - 0.0