Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1868 ATGGAGAAGAAAGGCAAAAGAAGAAGGCAACAGAAAAAGCTTGAGTTCCCAGCAATGGCTGCACTGCTTTTCTTATTCTTCAGTTTATCTCTCGCCAACGACAATCCACAACAACAACATTCCTCCCAACAAATGGTAGAAAATTTGGTGGAGAACAACAACAAATCAATGTTGTCACGCGACGTAACCTTCGAATGGCAGAATCATGGACAGGTGGTAATTGACAATGGGTTAGTTCGAGTCACATTATCTCGTCCAGAAGGCAATGTTATTGGCCTAAAATACAAGGGTATTGATAACGTACTTGAAATTCACAACCCACAATATAACAGAGGCTATTGGGACGTGGTTTGGAACCAGCCAAATAGAGCTAGTGCCACGGACAGAGTAAGAGCGACCAATTTCAAAGTGATTACGGCCAACAGTGACCAGATAGAGCTTTCATTCACCAAAACTTGGGATCCTTCTGACTCTTTTTCACTCCCTTTGAACATAGACAAAAGGTATATTCTTCGACGTGGTGATTCTGGGTTCTATTCATATGGCATATTTGAACGACTTGATGGATGGCCTCAAATCGACGTTGATCAAATTAGAATTGCCTACAAACTTCGAGGGGACAAATTTCATTACATGGCGGTATCAGACGATAGACAAAGAATCATGCCAACGTTACAGGATCGTCTAACAGGACGACCTCTAGCTTATCCGGAGGCTGTTCTCTTAACTCGACCCACCAATTCTAACCTCAAAGGAGAGGTGGACGATAAGTACCAATACTCCTTAGAAAATATGGAGAACAAGGTTCATGGATGGGAATCGAATGAGCCACACGTGGGATTCTGGATGATCACGCCCAGTGATGAGTTTCGCACGGCGGGGCCCCTCAAGCAAGATCTCACTTCCCACGTCGGCCCCACCACTCTCTCCATGTTTGTGAGTACCCATTATGCGGGTAAAGAAGTTTCCATGAGATTTGGAGAGGGAGAGGCTTGGAAGAAGGTTTTCGGACCGGTTTTCACTTATCTAAACTCGGATCCGACCGGCACTGAAAATCTCGGTTCACTATGGGAAGATGCTAAAAATCAGATGAGGATAGAAACGAGTAAGTGGCCATACAACTTTGTTGAATCCGAAGACTTTCCCTCGTCCAACCAAAGAGGAACCGTGACTGGTCGATTACTAGTCCGAGATAGATACGCTAAGATTTCACTGATGTGGGCCGATTCGGCTTATGTGGGCCTCGCTGCTCCCGGGGAATTAGGGTCTTGGCAAAAAGAAAGCAAGGGATATCAATTCTGGACACGCACAGACGAGCAAGGATACTTCTCAATCGATAACATAAGGCCTGGAAACTACAATCTCTATGCTTGGGTACCTGGTGTCATTGGAGATTACAAGTACGACGATGTAATCACCGTCACACCAAGGAGTTCCACTAGCCTAAACTTGTTGGTCTATGACCCTCCAAGACAAGGCCCAACTTTGTGGGAGATTGGTGTCCCAGATAGGATGGCGGCTGAGTTCTATATACCGAATCCCCAACCCACCCTTATGAACCACCTTTACAACAATTCCAAATTCCAGACCCAAGATAATTTTCGACAGTATGGTCTTTGGAATCGTTACTCTGAATTGTATCCCGATCAAGATCTCGTCTACAACGTCGCCACCGACAATTACCGTCGTCATTGGTTCTTCGCTCATGTCACAAGAGCCACTCATTTCGACACCTACGAGTCAACCACTTGGCAAATTTTGTTTCGTCTTCAAGGGCCTAAACAGACCGGTAACTATATGCTCCGGTTGGCCTTGGCCTCCTCTACCGAGGCGGTGGTCGATATCCGGTTCAACAATCCGTCTGCCAGACGGGCTCATTTCACGACCGGATATTGGTCCTCAGGAAGAGATAACGCCATTGCCAGACATGGGATTCATGGGCTTTATTGGTTGTTCAACTTCGAGGTTCCAAGTGAATATTTGGTAGAAGATGAAAACATAATCTATCTTACACAGAGAAGACATACGGGGCCCTTTCAAGGTGTAATGTACGACTACATACGATTTGAAGGTGTAGAGTAA 2082 45.53 MEKKGKRRRQQKKLEFPAMAALLFLFFSLSLANDNPQQQHSSQQMVENLVENNNKSMLSRDVTFEWQNHGQVVIDNGLVRVTLSRPEGNVIGLKYKGIDNVLEIHNPQYNRGYWDVVWNQPNRASATDRVRATNFKVITANSDQIELSFTKTWDPSDSFSLPLNIDKRYILRRGDSGFYSYGIFERLDGWPQIDVDQIRIAYKLRGDKFHYMAVSDDRQRIMPTLQDRLTGRPLAYPEAVLLTRPTNSNLKGEVDDKYQYSLENMENKVHGWESNEPHVGFWMITPSDEFRTAGPLKQDLTSHVGPTTLSMFVSTHYAGKEVSMRFGEGEAWKKVFGPVFTYLNSDPTGTENLGSLWEDAKNQMRIETSKWPYNFVESEDFPSSNQRGTVTGRLLVRDRYAKISLMWADSAYVGLAAPGELGSWQKESKGYQFWTRTDEQGYFSIDNIRPGNYNLYAWVPGVIGDYKYDDVITVTPRSSTSLNLLVYDPPRQGPTLWEIGVPDRMAAEFYIPNPQPTLMNHLYNNSKFQTQDNFRQYGLWNRYSELYPDQDLVYNVATDNYRRHWFFAHVTRATHFDTYESTTWQILFRLQGPKQTGNYMLRLALASSTEAVVDIRFNNPSARRAHFTTGYWSSGRDNAIARHGIHGLYWLFNFEVPSEYLVEDENIIYLTQRRHTGPFQGVMYDYIRFEGVE 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32217605 32221845 + CaPI482276_01g018680.1 Cam01g1868 118950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1868 693 Pfam Rhamnogalacturonate lyase family 66 254 IPR010325 -
Cam01g1868 693 CDD RGL4_C 497 690 - -
Cam01g1868 693 SUPERFAMILY Galactose mutarotase-like 68 353 IPR011013 GO:0003824(InterPro)|GO:0005975(InterPro)|GO:0030246(InterPro)
Cam01g1868 693 Gene3D - 64 353 IPR014718 GO:0030246(InterPro)
Cam01g1868 693 CDD RGL4_N 64 348 - -
Cam01g1868 693 SUPERFAMILY Starch-binding domain-like 384 485 IPR013784 GO:0030246(InterPro)
Cam01g1868 693 Pfam Polysaccharide lyase family 4, domain III 495 689 IPR029411 -
Cam01g1868 693 Pfam Polysaccharide lyase family 4, domain II 409 481 IPR029413 -
Cam01g1868 693 CDD RGL4_M 386 483 IPR029413 -
Cam01g1868 693 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 52 691 IPR051850 -
Cam01g1868 693 SUPERFAMILY Galactose-binding domain-like 493 690 IPR008979 -
Cam01g1868 693 Gene3D - 383 485 - -
Cam01g1868 693 Gene3D - 493 689 - -
Cam01g1868 693 FunFam Rhamnogalacturonate lyase B 383 483 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1868 Cam-Chr1:32217605 Cam11g1493 Cam-Chr11:27738624 2.00E-221 dispersed
Cam10g0806 Cam-Chr10:16149035 Cam01g1868 Cam-Chr1:32217605 1.30E-236 transposed
Cam01g1868 Cam-Chr1:32217605 Cam11g1492 Cam-Chr11:27716227 1.00E-209 wgd
Cam01g1868 Cam-Chr1:32217605 Cam08g1611 Cam-Chr8:22282428 8.70E-217 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1868 K18195 - csv:101206696 1127.46