Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1878 ATGAACGGCAAAGCAGAGAAGGTCTTCGTTGCTATTGGGAACGATCTTCACGATGGGTTCAAGACCTTGGGGTGGACTCTAAGGAAATGGAAGTCTCGCCCAATTTCAATAGTGATTCTTCACGTCGCCTACAACAATTCCATGGAATATGTTCACACTCCATTCGGGAAACTGCCTGCGAGTTCTATAAGTGAGGAGAAAGTGGAAGTTCTAAGGAGATATGAGCAGGAAAAGATCGACAAGCTACTTTCTAAATATGTGGATTTTTGTGGCAAGGAAAGAGCCGAAATTCTCAAGGTCGAGAAATCTGATGAACCTGTTCATAAGCTCATTGTTGACTTGATTTCAGAACTGGGAATAACCAATTTGGTCATTGGCTTCACATTCATGAAATCTTCATCTTGGAAGCCGAAGAATGCTATAAGTGGATCATTTTACATTTATAGGAACAAAGCCCATTTTTGCGAGTTATTTGTGATATGGGGAGGAAAACAGGTATTTCTCAGAGATGAAAGAATCGTGGAAGATGATAAAGGTGTAAGGATCTCTAAAATCAGCACCAAGCACTCGTTAAAGGGCTGGCTGGGAAAGATGTTCGTGGAAGACCCAAACTATTCCTCAGACAGGAATTTGAGTCTCTTGTCTTCTTCACCAATTAATACAAATTCCATGAGTTCTCGAAATTATTGGGACCAGAATGTTCATGAACTAGAGAACTACTATGAGGAATTACTTTCATTGAATTTACAGGAAGAAGAAGACTGTGAGCAGGATCAAGATGGTGTCCTTGGAAGTTCAAGTTCAACCCAGTTCAATATTCTGGATCATGCGGATTCAAATATGAATGCTGAGGAAAGAATAGAGCATCTGAGAACTAAAATTGAGGAAGCTCGCAAGACCATCCAGTTGATGAAAGATGAAGCAAAGGGTAGTTCTGAAAGGCAAGCTAAAGCAGAGTGGGCCATTAATTTGTGCAGTCAGCGGACCGAAGAGCTTGAAGCTAAGATAAAAGAAGAGGTTACAATTAGGGAAGAGTTGCAAAAAGAATTAAATTCTGCCAAAGAACACATCCTTGAAATAGTAGGTGATATCGAGGAAGGCAAGATCAAATTAGGTTCACTTCTGGAACTCCAAGCTGAATTATCAAGCAAGCTACAGATTTCCACAGCAGGAAAATCGCGTCTAGAGGCTCAATTGGAGAAGACAGCAAAAACAAGAGAGGGGATGGTGAGAGAAATCGAGGAGCTGAGAAGACAAAGAGAGATTCTTCACCGGAGAATTGAGTTCTGTAAAGATAAAGATGCCATTGGAATGACCGAAAGGTCAACAACTGAAGTGTCTTGTAGTACAAGAGTGTACACGGCAGAAGAGGTCAGATTGGCCACTGATAGCTTTTCAGAACAAATGAGATTGAGTTCCCGAGTGTATAGAGGACGTATCAACCATATCTCAGTTGCAATACAGATGATCGACTCAGGAAACTGTCTGTCAGAAGATGACTTCCAATCTAAGGTGGAGCTTTTAAGCCATATCCATCACCCTCATCTGATTGCCATAATGGGATTCTGCCCCGAGCTCAAATGCATTGTCTTTGATTACATGCAGAGCGGTAGCTTAAGTGACAGACTACTTCCTTCCAATTCCAACAAAAGATCCAAAAAAATATGTCGCCCTCTCATGTGGCATGAAAGAATCCGTATAGCTTCAGAGGTATGCTCGGCCCTGTGCTTCCTTCACCAGGCCCAACCTCAGCCCATTTCTCATGGCAAACTCACCATGTCCAAAATTCTCCTGGATCAAAACCTTGCTGCCAAAGTCACTGGTTTTGGGCTCCACGAATTGGATGAAGCTAGTGGTACCGAGTTGGACATCCGGGCCTTTGGGGCTCTGTTGCTACATATTGTAACCGGGAGGACTTGGGAAGGGCTGATTGAGAAGGCATTGTCAATGGGTAAGGTGGGTCTGGTCCAGATTCTAGATGATAAAGCTGGACAGTGGCCATTGAGCTTGGTTGATGGGCTAGTTGATCTGGCTTTGAGATGTGCAACTCCAAATGGTTCCAATTCAGATGTTAACTTGGGGACAGCCATGGAAGAGCTCGATGAGATCAAGAGGAAAGCAGATGATCTGGTGGTTGGAAATGGAAAGGATGAGGGAGGTATTGATGGTACAGATGCAGCTAATGAGGACATAGATGATGTGCCAAGAATCTTCATCTGTCCCATCTTGCAGGAAGTGATGAAGAACCCACACGTGGCAGCAGATGGGTTTTCTTACGAGCTAGAGGCCATAGAACAATGGTTAAGAGCAGGACATGATACATCACCAATGACCAACTTGAAGCTGCAGCACCCTTATCTCACTCCTAATCATACTCTTCGCTCTTTAATTCAAGACTGGCAAAGTGAGACCTCAAATGTTTAA 2424 43.19 MNGKAEKVFVAIGNDLHDGFKTLGWTLRKWKSRPISIVILHVAYNNSMEYVHTPFGKLPASSISEEKVEVLRRYEQEKIDKLLSKYVDFCGKERAEILKVEKSDEPVHKLIVDLISELGITNLVIGFTFMKSSSWKPKNAISGSFYIYRNKAHFCELFVIWGGKQVFLRDERIVEDDKGVRISKISTKHSLKGWLGKMFVEDPNYSSDRNLSLLSSSPINTNSMSSRNYWDQNVHELENYYEELLSLNLQEEEDCEQDQDGVLGSSSSTQFNILDHADSNMNAEERIEHLRTKIEEARKTIQLMKDEAKGSSERQAKAEWAINLCSQRTEELEAKIKEEVTIREELQKELNSAKEHILEIVGDIEEGKIKLGSLLELQAELSSKLQISTAGKSRLEAQLEKTAKTREGMVREIEELRRQREILHRRIEFCKDKDAIGMTERSTTEVSCSTRVYTAEEVRLATDSFSEQMRLSSRVYRGRINHISVAIQMIDSGNCLSEDDFQSKVELLSHIHHPHLIAIMGFCPELKCIVFDYMQSGSLSDRLLPSNSNKRSKKICRPLMWHERIRIASEVCSALCFLHQAQPQPISHGKLTMSKILLDQNLAAKVTGFGLHELDEASGTELDIRAFGALLLHIVTGRTWEGLIEKALSMGKVGLVQILDDKAGQWPLSLVDGLVDLALRCATPNGSNSDVNLGTAMEELDEIKRKADDLVVGNGKDEGGIDGTDAANEDIDDVPRIFICPILQEVMKNPHVAADGFSYELEAIEQWLRAGHDTSPMTNLKLQHPYLTPNHTLRSLIQDWQSETSNV 807
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32288220 32291620 + CaPI482276_01g018780.1 Cam01g1878 118960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1878 807 ProSiteProfiles U-box domain profile. 733 807 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam01g1878 807 Pfam Protein tyrosine and serine/threonine kinase 474 614 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam01g1878 807 SMART Ubox_2 737 800 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam01g1878 807 Pfam U-box domain 734 805 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cam01g1878 807 CDD RING-Ubox_WDSUB1-like 735 790 - -
Cam01g1878 807 ProSiteProfiles Protein kinase domain profile. 454 787 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g1878 807 Coils Coil 280 314 - -
Cam01g1878 807 Coils Coil 392 433 - -
Cam01g1878 807 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 732 807 IPR013083 -
Cam01g1878 807 PANTHER OS02G0152300 PROTEIN 8 798 IPR051348 -
Cam01g1878 807 Coils Coil 329 363 - -
Cam01g1878 807 SUPERFAMILY Protein kinase-like (PK-like) 446 685 IPR011009 -
Cam01g1878 807 Gene3D Transferase(Phosphotransferase) domain 1 443 627 - -
Cam01g1878 807 SUPERFAMILY RING/U-box 725 805 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1878 Cam-Chr1:32288220 Cam05g0179 Cam-Chr5:1902846 1.60E-68 dispersed
Cam01g1878 Cam-Chr1:32288220 Cam02g2089 Cam-Chr2:33753807 1.90E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
84897 PF07714 PK_Tyr_Ser-Thr 4.60E-16 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1878 - - - 0.0