Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam01g1883 | ATGCATCTAATAGTTGAGAAGATACAAGAGTTCAAAGTGAAGATTGAGCATAGTGCTCTCATCCTCAACCTTTTACGGCAAAGTTTGGCTGACGAGTTGGAATTTTGCTTCTCCAGAAATGGAGACTTTCACTTCCTTTCAACTGTAGCCTCATTCTCTTTCCGCTACTCATTGGTGGCTTTCCATCTTTCTGAAAAACCAACCCTAACCGCGTTTCCCTATCAAAAAGCAAGGCTAGTTATAGAGGTTGAAATGGCGAAAGAAAAAATCCAGATCAGGAAGATCGATAACGCCACGGCGAGGCAGGTCACTTTCTCCAAGCGTCGGAGGGGACTTTTTAAGAAAGCCAAAGAGCTTTCCGTTTTATGCGATGCCGATGTTGCCCTCATTATCTTCTCCGCCACCGGAAAGCTGTTTGAGTACTCAAGCTCAAGCATGAAGGGAATCATAGAAAGACATAATTTGCACTCTAAGAACCTTCAGAAATTGGAACAACCATCCCTTGAACTACAGCTGGTTGAAAATAGCAATTACACCCGATTAAACAAGGAAATTGCTGACAAGACTCATCAGCTAAGGCAGATGAGGGGAGAAGAACTCCAAACACTGAATATAGAGGAATTGCAGAAGCTAGAGAAGTCACTGGAGTCTGGATTGAGTCGTGTGATGGAGAAAAAGGGTGAACGGATCATGAAAGAGATCACCGACCTTCAAAGAAAGTCGGCCGAGTTGATGGATGAGAATAAGCGACTTAAACAACAAGCGGAGAAAATGAACGCCGTGAGGCACCTGGGCGTCGACCCCGAGATTTTGGTCGTGGAAGATGGCCAATCTTCGAACTCCGTCACTGAAGCTGGTGTCTCCAACTCCAATGGCCCGCCTCAAGATCTGGAAAGCTCAGACACATCTCTGAAATTAGGTGAATCCAATTGGTTGCAGGCTGCCGTATTCCGGGTGATGGTGATGGTGATGGTGATGGAACAAGAAGATGAACAGCTACCGATAAATGAATCCAATAAAGTGGACCTTCAAGCAGAGGCCCGCAAAGGCAACAACGAGTCAAATCTCTACTCGAAAACACGTCTTCGTCCTTGTGTAGTTAAAGTGGAACGAGCAGAGGCAAAAGTTATTTTCACTACTTTCGCATTCGATTGGCAGAACCCATCTCCAAAATCCATGGTTATGGGACTCAGTTATCAGTCGAACAGAGCTGGAGCTCTGGCTGGTGTTTTTGTGCTGCTTTTTCCTGTTTTTCTACCGGGTTTGTTTAGCCCGTTGGGTCATGCTTCCCCTTCCACATTCTCGGAATGGAACACTCCAAAGCCCAGGCACTTGCGTCTGCTGAAAAGTGCTTTACAACGCCAAACTTCAAAACCAGATCAGTCTGATTTATGGGCCCCTTTAGCTGATGAAGGGTGGAGGCCTTGTGTTGCTTCTTCAAAAGCTTCCTCACTACCGGGGAGCTCTGAAGGATATATTCAGGTGTTTCTTGATGGAGGGCTGAACCAGCAAAGAATGGGAATATGTGATGCAGTTGCAGTTGCAAAAATTCTAAATGCAACCCTTGTGATTCCCCACCTTGAAATTAATCCTGTCTGGAAAGATTCAAGTTCTTTCGTCGATATATTTGATGTGGATCACTTTATTAACGTATTGAAGGATGACATTTCTATAGTTAAAGAGTTGCCAGCTGACTTTTCTTGGAGTACTAGGGAATATTATGCTACAGCCATTCGGGCTACTAGAGTCAAAACAGCACCTGTTCATGCCTCAGCCAACTGGTATCTGGACAATGTTTTACCCGTATTACAGAGCTACGGTATTGCTGCCATTGCACCCTTCTCGCATCGTCTAGCTTTTGAGAACTTGCCTGATGAGATACAAAGGTTGCGCTGTAAGGTCAACTTTCAAGCATTAACTTTTGTTCCCCATATCCGAGAACTAGGAGACGCTCTCATCAGTCGGCTGCGGTATCCTTTGAATAAGGAGTCAAAGAAGGCTAACTACCTAAGTATGACCACTGATGCAAATGAACAAGGTCCATTGAAGTTTGTTGTCCTACACCTTCGATTTGACAAGATTGTTAGTGAGCTACCACCATTATCTGCTCAAGTAAGCAACTGGTCGAATTTATGGGTCCCCATTGCAACTTCAGCGTATTTAAGGTTTTTACTTAACCAGTTCATCGTCATCCTAGGTTTTAAGAGTCTAAGGACAGGGGTACTGGCCAATACGATTGGCCATCATGAAATCAAATTGAATGACTGGAACTTAGGACAGGGTTCCACAGCTGCTGATGTCTTTATGTTTGACATGAAGGACATGGCAGCTCATTCAGCCTGCGATTTTGGTGGAGGAAAGGCTGAAAAACTTGCTTTGGCCAAATATCGTCAAGTGCTCTGGCAGGGAAGGGTCCTGAACTCTCAGTTCACGGATGAGGAGTTGCGGAGTCAGGGTCGTTGCCCTTTGACACCTGAAGAAATCGGTTTGCTACTGGCTGCTTTGGGTTTTGACAACAATACCCGCCTATATTTGGCCTCCCACAAGGTATATGGTGGGGAAGCTAGGATTTTTACTTTGCGAAGTCTTTTCCCATTAATGGAAGATAAGAAGAGTCTCACTTCTGGAAATGAACTAGCCCAAATCAAAGGAAAGGCTTCTTTGCTAGCTGCGGTTGACTACTACGTAAGCATGCACAGTGACATTTTTATCTCAGCTTCTCCTGGAAATATGCATAATGCAATGGTGGGACATCGCACGTACGAGAACTTGAAGACCATAAGACCAAACATGGCATTGTTGGGACAACTTTTCATGAACAAAAGCATCATTTGGTCAGACTTTCAGCAGGCCACAGTAGAAGGCCACAAAAACAGACAAGGACAAATAAGGTTGAGAAAGCCAAAGCAGTCAATATACACATATCCAGCTCCTGACTGTGTTTGCCACTCTTGA | 2955 | 44.67 | MHLIVEKIQEFKVKIEHSALILNLLRQSLADELEFCFSRNGDFHFLSTVASFSFRYSLVAFHLSEKPTLTAFPYQKARLVIEVEMAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSSSMKGIIERHNLHSKNLQKLEQPSLELQLVENSNYTRLNKEIADKTHQLRQMRGEELQTLNIEELQKLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELMDENKRLKQQAEKMNAVRHLGVDPEILVVEDGQSSNSVTEAGVSNSNGPPQDLESSDTSLKLGESNWLQAAVFRVMVMVMVMEQEDEQLPINESNKVDLQAEARKGNNESNLYSKTRLRPCVVKVERAEAKVIFTTFAFDWQNPSPKSMVMGLSYQSNRAGALAGVFVLLFPVFLPGLFSPLGHASPSTFSEWNTPKPRHLRLLKSALQRQTSKPDQSDLWAPLADEGWRPCVASSKASSLPGSSEGYIQVFLDGGLNQQRMGICDAVAVAKILNATLVIPHLEINPVWKDSSSFVDIFDVDHFINVLKDDISIVKELPADFSWSTREYYATAIRATRVKTAPVHASANWYLDNVLPVLQSYGIAAIAPFSHRLAFENLPDEIQRLRCKVNFQALTFVPHIRELGDALISRLRYPLNKESKKANYLSMTTDANEQGPLKFVVLHLRFDKIVSELPPLSAQVSNWSNLWVPIATSAYLRFLLNQFIVILGFKSLRTGVLANTIGHHEIKLNDWNLGQGSTAADVFMFDMKDMAAHSACDFGGGKAEKLALAKYRQVLWQGRVLNSQFTDEELRSQGRCPLTPEEIGLLLAALGFDNNTRLYLASHKVYGGEARIFTLRSLFPLMEDKKSLTSGNELAQIKGKASLLAAVDYYVSMHSDIFISASPGNMHNAMVGHRTYENLKTIRPNMALLGQLFMNKSIIWSDFQQATVEGHKNRQGQIRLRKPKQSIYTYPAPDCVCHS | 984 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 32315972 | 32330431 | - | CaPI482276_01g018830.1 | Cam01g1883 | 118965 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam01g1883 | 984 | MobiDBLite | consensus disorder prediction | 276 | 302 | - | - | |
Cam01g1883 | 984 | Gene3D | - | 97 | 166 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam01g1883 | 984 | CDD | O-FucT_plant | 492 | 927 | IPR024709 | - | |
Cam01g1883 | 984 | Coils | Coil | 178 | 198 | - | - | |
Cam01g1883 | 984 | ProSiteProfiles | MADS-box domain profile. | 85 | 145 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam01g1883 | 984 | Pfam | K-box region | 175 | 255 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cam01g1883 | 984 | Coils | Coil | 205 | 225 | - | - | |
Cam01g1883 | 984 | PRINTS | MADS domain signature | 122 | 143 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam01g1883 | 984 | PRINTS | MADS domain signature | 87 | 107 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam01g1883 | 984 | PRINTS | MADS domain signature | 107 | 122 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam01g1883 | 984 | Pfam | GDP-fucose protein O-fucosyltransferase | 773 | 921 | IPR019378 | - | |
Cam01g1883 | 984 | Pfam | GDP-fucose protein O-fucosyltransferase | 492 | 692 | IPR019378 | - | |
Cam01g1883 | 984 | Coils | Coil | 227 | 261 | - | - | |
Cam01g1883 | 984 | SUPERFAMILY | SRF-like | 87 | 167 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam01g1883 | 984 | FunFam | Transcription factor, MADS-box | 97 | 167 | - | - | |
Cam01g1883 | 984 | CDD | MADS_MEF2_like | 86 | 161 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Cam01g1883 | 984 | SMART | madsneu2 | 85 | 144 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam01g1883 | 984 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 94 | 141 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cam01g1883 | 984 | ProSiteProfiles | K-box domain profile. | 171 | 261 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cam01g1883 | 984 | PANTHER | O-FUCOSYLTRANSFERASE 2-RELATED | 394 | 693 | IPR052272 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam01g1883 | Cam-Chr1:32315972 | Cam05g2786 | Cam-Chr5:35042670 | 5.90E-78 | dispersed | |
Cam09g1583 | Cam-Chr9:26809522 | Cam01g1883 | Cam-Chr1:32315972 | 7.10E-20 | dispersed | |
Cam10g0979 | Cam-Chr10:21887853 | Cam01g1883 | Cam-Chr1:32315972 | 1.50E-13 | dispersed | |
Cam10g1463 | Cam-Chr10:28309209 | Cam01g1883 | Cam-Chr1:32315972 | 6.90E-23 | dispersed | |
Cam01g1883 | Cam-Chr1:32315972 | Cam10g0941 | Cam-Chr10:21328192 | 2.20E-48 | wgd | |
Cam01g1883 | Cam-Chr1:32315972 | Cam08g1625 | Cam-Chr8:22456657 | 1.50E-209 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
51319 | PF10250 | O-FucT | 3.20E-33 | CL0113 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam01g1883 | - | - | - | 0.0 |