Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1883 ATGCATCTAATAGTTGAGAAGATACAAGAGTTCAAAGTGAAGATTGAGCATAGTGCTCTCATCCTCAACCTTTTACGGCAAAGTTTGGCTGACGAGTTGGAATTTTGCTTCTCCAGAAATGGAGACTTTCACTTCCTTTCAACTGTAGCCTCATTCTCTTTCCGCTACTCATTGGTGGCTTTCCATCTTTCTGAAAAACCAACCCTAACCGCGTTTCCCTATCAAAAAGCAAGGCTAGTTATAGAGGTTGAAATGGCGAAAGAAAAAATCCAGATCAGGAAGATCGATAACGCCACGGCGAGGCAGGTCACTTTCTCCAAGCGTCGGAGGGGACTTTTTAAGAAAGCCAAAGAGCTTTCCGTTTTATGCGATGCCGATGTTGCCCTCATTATCTTCTCCGCCACCGGAAAGCTGTTTGAGTACTCAAGCTCAAGCATGAAGGGAATCATAGAAAGACATAATTTGCACTCTAAGAACCTTCAGAAATTGGAACAACCATCCCTTGAACTACAGCTGGTTGAAAATAGCAATTACACCCGATTAAACAAGGAAATTGCTGACAAGACTCATCAGCTAAGGCAGATGAGGGGAGAAGAACTCCAAACACTGAATATAGAGGAATTGCAGAAGCTAGAGAAGTCACTGGAGTCTGGATTGAGTCGTGTGATGGAGAAAAAGGGTGAACGGATCATGAAAGAGATCACCGACCTTCAAAGAAAGTCGGCCGAGTTGATGGATGAGAATAAGCGACTTAAACAACAAGCGGAGAAAATGAACGCCGTGAGGCACCTGGGCGTCGACCCCGAGATTTTGGTCGTGGAAGATGGCCAATCTTCGAACTCCGTCACTGAAGCTGGTGTCTCCAACTCCAATGGCCCGCCTCAAGATCTGGAAAGCTCAGACACATCTCTGAAATTAGGTGAATCCAATTGGTTGCAGGCTGCCGTATTCCGGGTGATGGTGATGGTGATGGTGATGGAACAAGAAGATGAACAGCTACCGATAAATGAATCCAATAAAGTGGACCTTCAAGCAGAGGCCCGCAAAGGCAACAACGAGTCAAATCTCTACTCGAAAACACGTCTTCGTCCTTGTGTAGTTAAAGTGGAACGAGCAGAGGCAAAAGTTATTTTCACTACTTTCGCATTCGATTGGCAGAACCCATCTCCAAAATCCATGGTTATGGGACTCAGTTATCAGTCGAACAGAGCTGGAGCTCTGGCTGGTGTTTTTGTGCTGCTTTTTCCTGTTTTTCTACCGGGTTTGTTTAGCCCGTTGGGTCATGCTTCCCCTTCCACATTCTCGGAATGGAACACTCCAAAGCCCAGGCACTTGCGTCTGCTGAAAAGTGCTTTACAACGCCAAACTTCAAAACCAGATCAGTCTGATTTATGGGCCCCTTTAGCTGATGAAGGGTGGAGGCCTTGTGTTGCTTCTTCAAAAGCTTCCTCACTACCGGGGAGCTCTGAAGGATATATTCAGGTGTTTCTTGATGGAGGGCTGAACCAGCAAAGAATGGGAATATGTGATGCAGTTGCAGTTGCAAAAATTCTAAATGCAACCCTTGTGATTCCCCACCTTGAAATTAATCCTGTCTGGAAAGATTCAAGTTCTTTCGTCGATATATTTGATGTGGATCACTTTATTAACGTATTGAAGGATGACATTTCTATAGTTAAAGAGTTGCCAGCTGACTTTTCTTGGAGTACTAGGGAATATTATGCTACAGCCATTCGGGCTACTAGAGTCAAAACAGCACCTGTTCATGCCTCAGCCAACTGGTATCTGGACAATGTTTTACCCGTATTACAGAGCTACGGTATTGCTGCCATTGCACCCTTCTCGCATCGTCTAGCTTTTGAGAACTTGCCTGATGAGATACAAAGGTTGCGCTGTAAGGTCAACTTTCAAGCATTAACTTTTGTTCCCCATATCCGAGAACTAGGAGACGCTCTCATCAGTCGGCTGCGGTATCCTTTGAATAAGGAGTCAAAGAAGGCTAACTACCTAAGTATGACCACTGATGCAAATGAACAAGGTCCATTGAAGTTTGTTGTCCTACACCTTCGATTTGACAAGATTGTTAGTGAGCTACCACCATTATCTGCTCAAGTAAGCAACTGGTCGAATTTATGGGTCCCCATTGCAACTTCAGCGTATTTAAGGTTTTTACTTAACCAGTTCATCGTCATCCTAGGTTTTAAGAGTCTAAGGACAGGGGTACTGGCCAATACGATTGGCCATCATGAAATCAAATTGAATGACTGGAACTTAGGACAGGGTTCCACAGCTGCTGATGTCTTTATGTTTGACATGAAGGACATGGCAGCTCATTCAGCCTGCGATTTTGGTGGAGGAAAGGCTGAAAAACTTGCTTTGGCCAAATATCGTCAAGTGCTCTGGCAGGGAAGGGTCCTGAACTCTCAGTTCACGGATGAGGAGTTGCGGAGTCAGGGTCGTTGCCCTTTGACACCTGAAGAAATCGGTTTGCTACTGGCTGCTTTGGGTTTTGACAACAATACCCGCCTATATTTGGCCTCCCACAAGGTATATGGTGGGGAAGCTAGGATTTTTACTTTGCGAAGTCTTTTCCCATTAATGGAAGATAAGAAGAGTCTCACTTCTGGAAATGAACTAGCCCAAATCAAAGGAAAGGCTTCTTTGCTAGCTGCGGTTGACTACTACGTAAGCATGCACAGTGACATTTTTATCTCAGCTTCTCCTGGAAATATGCATAATGCAATGGTGGGACATCGCACGTACGAGAACTTGAAGACCATAAGACCAAACATGGCATTGTTGGGACAACTTTTCATGAACAAAAGCATCATTTGGTCAGACTTTCAGCAGGCCACAGTAGAAGGCCACAAAAACAGACAAGGACAAATAAGGTTGAGAAAGCCAAAGCAGTCAATATACACATATCCAGCTCCTGACTGTGTTTGCCACTCTTGA 2955 44.67 MHLIVEKIQEFKVKIEHSALILNLLRQSLADELEFCFSRNGDFHFLSTVASFSFRYSLVAFHLSEKPTLTAFPYQKARLVIEVEMAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSSSMKGIIERHNLHSKNLQKLEQPSLELQLVENSNYTRLNKEIADKTHQLRQMRGEELQTLNIEELQKLEKSLESGLSRVMEKKGERIMKEITDLQRKSAELMDENKRLKQQAEKMNAVRHLGVDPEILVVEDGQSSNSVTEAGVSNSNGPPQDLESSDTSLKLGESNWLQAAVFRVMVMVMVMEQEDEQLPINESNKVDLQAEARKGNNESNLYSKTRLRPCVVKVERAEAKVIFTTFAFDWQNPSPKSMVMGLSYQSNRAGALAGVFVLLFPVFLPGLFSPLGHASPSTFSEWNTPKPRHLRLLKSALQRQTSKPDQSDLWAPLADEGWRPCVASSKASSLPGSSEGYIQVFLDGGLNQQRMGICDAVAVAKILNATLVIPHLEINPVWKDSSSFVDIFDVDHFINVLKDDISIVKELPADFSWSTREYYATAIRATRVKTAPVHASANWYLDNVLPVLQSYGIAAIAPFSHRLAFENLPDEIQRLRCKVNFQALTFVPHIRELGDALISRLRYPLNKESKKANYLSMTTDANEQGPLKFVVLHLRFDKIVSELPPLSAQVSNWSNLWVPIATSAYLRFLLNQFIVILGFKSLRTGVLANTIGHHEIKLNDWNLGQGSTAADVFMFDMKDMAAHSACDFGGGKAEKLALAKYRQVLWQGRVLNSQFTDEELRSQGRCPLTPEEIGLLLAALGFDNNTRLYLASHKVYGGEARIFTLRSLFPLMEDKKSLTSGNELAQIKGKASLLAAVDYYVSMHSDIFISASPGNMHNAMVGHRTYENLKTIRPNMALLGQLFMNKSIIWSDFQQATVEGHKNRQGQIRLRKPKQSIYTYPAPDCVCHS 984
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 32315972 32330431 - CaPI482276_01g018830.1 Cam01g1883 118965
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1883 984 MobiDBLite consensus disorder prediction 276 302 - -
Cam01g1883 984 Gene3D - 97 166 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam01g1883 984 CDD O-FucT_plant 492 927 IPR024709 -
Cam01g1883 984 Coils Coil 178 198 - -
Cam01g1883 984 ProSiteProfiles MADS-box domain profile. 85 145 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam01g1883 984 Pfam K-box region 175 255 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cam01g1883 984 Coils Coil 205 225 - -
Cam01g1883 984 PRINTS MADS domain signature 122 143 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam01g1883 984 PRINTS MADS domain signature 87 107 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam01g1883 984 PRINTS MADS domain signature 107 122 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam01g1883 984 Pfam GDP-fucose protein O-fucosyltransferase 773 921 IPR019378 -
Cam01g1883 984 Pfam GDP-fucose protein O-fucosyltransferase 492 692 IPR019378 -
Cam01g1883 984 Coils Coil 227 261 - -
Cam01g1883 984 SUPERFAMILY SRF-like 87 167 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam01g1883 984 FunFam Transcription factor, MADS-box 97 167 - -
Cam01g1883 984 CDD MADS_MEF2_like 86 161 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cam01g1883 984 SMART madsneu2 85 144 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam01g1883 984 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 94 141 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam01g1883 984 ProSiteProfiles K-box domain profile. 171 261 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cam01g1883 984 PANTHER O-FUCOSYLTRANSFERASE 2-RELATED 394 693 IPR052272 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1883 Cam-Chr1:32315972 Cam05g2786 Cam-Chr5:35042670 5.90E-78 dispersed
Cam09g1583 Cam-Chr9:26809522 Cam01g1883 Cam-Chr1:32315972 7.10E-20 dispersed
Cam10g0979 Cam-Chr10:21887853 Cam01g1883 Cam-Chr1:32315972 1.50E-13 dispersed
Cam10g1463 Cam-Chr10:28309209 Cam01g1883 Cam-Chr1:32315972 6.90E-23 dispersed
Cam01g1883 Cam-Chr1:32315972 Cam10g0941 Cam-Chr10:21328192 2.20E-48 wgd
Cam01g1883 Cam-Chr1:32315972 Cam08g1625 Cam-Chr8:22456657 1.50E-209 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51319 PF10250 O-FucT 3.20E-33 CL0113 Cam TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1883 - - - 0.0