Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1891 ATGGCTGATAGTTTTTACTGTACAGAGAATGCCAATATTTGTTTTGATGATCAATTTGATTGTAATGGTACAAATAATGAGTTTGAGCGATTCTCAATTTCTCTGCCCTACCGAAGAACCCGTGACCCGAATGTTGACTGTCTCGGATCCGAGACTTTTCTGGGCTCTCCCTTAGAGAGTGAAGAGAGAATTAGAAGAATGGTTGAGAAAGAGATTGAACATTTGCCAACTCATGATTATCTTAAGAGAATGCTCTCTGGGGATTTGGATTTGAAGTTTAGAAGAGACGCTGTTGATTGGATTTGGAAGGCTCATGCCCATTACAGCTTTGGACCTCTGAGTCTTTGTTTATCTATGAACTACTTGGACCGTTTCCTCTCAGTTTATCATTTGCCTATGGATAAAAGCTGGACTGTGCAGCTCCTGTCAGTAGCTTGTGTGTCTTTAGCAGCAAAAATGGAGGAGACAGAAGTGCCTCTTCCCATAGATTTACAGGTTGAGGAACCTAAGTTTGTGTTTGAAGCAAAAACCATACAAAGAATGGAGCTTTTAGTTCTAAGCAGGTTGAAATGGAAGATGCAAGCCATAACTCCATTTTCTTTCATTGATTATTTCCTCAGTAAGATAACTGTTGAGCAACACATACCAAGCCTATTCTTCTCTAAATCTTCACAACTCATTCTGAGCACAATTAAAGGCATTGACTTCTTGGAATTCAGGCCCTCTGAAATTGCTTTGGCTGTGGCAATTTCCATTTCAGGAGAATTACAAGCACCAGATATGAATAAAGCAATCCTTTCTTTTCCATATATGGAGAAAGAAAGAGTCATGAAGTGTATCGAACTGATTAGAGATTTGTCATTGATTAATAATATGTATGGAAATTCATTGGCTGGTAATGTTGGTGGTTCAGTTCCTCAGAGTCCAGTTGGGGTTTTGGATGCAGCTTGTTTGAGTTACAAAACAGAAGAATTATTAACTGCAGGCTCATGTGGTAATTCTTCTTCTTCTCATGACAGTCCAAACAGCAAGAGGAGGAGACAAGATAGACCATCATCAAATGATGATTCAAGTCCATCCAGTCCTGTCAAATGA 1095 39.27 MADSFYCTENANICFDDQFDCNGTNNEFERFSISLPYRRTRDPNVDCLGSETFLGSPLESEERIRRMVEKEIEHLPTHDYLKRMLSGDLDLKFRRDAVDWIWKAHAHYSFGPLSLCLSMNYLDRFLSVYHLPMDKSWTVQLLSVACVSLAAKMEETEVPLPIDLQVEEPKFVFEAKTIQRMELLVLSRLKWKMQAITPFSFIDYFLSKITVEQHIPSLFFSKSSQLILSTIKGIDFLEFRPSEIALAVAISISGELQAPDMNKAILSFPYMEKERVMKCIELIRDLSLINNMYGNSLAGNVGGSVPQSPVGVLDAACLSYKTEELLTAGSCGNSSSSHDSPNSKRRRQDRPSSNDDSSPSSPVK 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32408441 32410309 + CaPI482276_01g018910.1 Cam01g1891 118973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1891 364 CDD CYCLIN_AtCycD-like_rpt1 94 191 - -
Cam01g1891 364 Pfam Cyclin, N-terminal domain 65 193 IPR006671 -
Cam01g1891 364 FunFam D2/4-type cyclin 77 189 - -
Cam01g1891 364 PANTHER CYCLINS 62 282 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cam01g1891 364 SMART Cyclin_C_2 196 307 IPR004367 -
Cam01g1891 364 MobiDBLite consensus disorder prediction 328 364 - -
Cam01g1891 364 Pfam Cyclin, C-terminal domain 196 287 IPR004367 -
Cam01g1891 364 FunFam D6-type cyclin 190 281 - -
Cam01g1891 364 CDD CYCLIN_AtCycD-like_rpt2 196 283 - -
Cam01g1891 364 Gene3D - 65 282 - -
Cam01g1891 364 SUPERFAMILY Cyclin-like 178 306 IPR036915 -
Cam01g1891 364 SMART cyclin_7 99 187 IPR013763 -
Cam01g1891 364 SUPERFAMILY Cyclin-like 59 193 IPR036915 -
Cam01g1891 364 Gene3D - 77 194 - -
Cam01g1891 364 ProSitePatterns Cyclins signature. 94 125 IPR048258 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1752 Cam-Chr1:31117588 Cam01g1891 Cam-Chr1:32408441 5.60E-36 dispersed
Cam01g1891 Cam-Chr1:32408441 Cam08g2089 Cam-Chr8:26428121 7.60E-47 dispersed
Cam02g1197 Cam-Chr2:23817219 Cam01g1891 Cam-Chr1:32408441 9.30E-33 transposed
Cam04g0922 Cam-Chr4:23339781 Cam01g1891 Cam-Chr1:32408441 2.30E-22 transposed
Cam10g0993 Cam-Chr10:22102980 Cam01g1891 Cam-Chr1:32408441 3.30E-52 transposed
Cam01g1891 Cam-Chr1:32408441 Cam08g1609 Cam-Chr8:22257233 1.40E-80 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1891 K18810 - csv:101209378 568.155