Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam01g1891 | ATGGCTGATAGTTTTTACTGTACAGAGAATGCCAATATTTGTTTTGATGATCAATTTGATTGTAATGGTACAAATAATGAGTTTGAGCGATTCTCAATTTCTCTGCCCTACCGAAGAACCCGTGACCCGAATGTTGACTGTCTCGGATCCGAGACTTTTCTGGGCTCTCCCTTAGAGAGTGAAGAGAGAATTAGAAGAATGGTTGAGAAAGAGATTGAACATTTGCCAACTCATGATTATCTTAAGAGAATGCTCTCTGGGGATTTGGATTTGAAGTTTAGAAGAGACGCTGTTGATTGGATTTGGAAGGCTCATGCCCATTACAGCTTTGGACCTCTGAGTCTTTGTTTATCTATGAACTACTTGGACCGTTTCCTCTCAGTTTATCATTTGCCTATGGATAAAAGCTGGACTGTGCAGCTCCTGTCAGTAGCTTGTGTGTCTTTAGCAGCAAAAATGGAGGAGACAGAAGTGCCTCTTCCCATAGATTTACAGGTTGAGGAACCTAAGTTTGTGTTTGAAGCAAAAACCATACAAAGAATGGAGCTTTTAGTTCTAAGCAGGTTGAAATGGAAGATGCAAGCCATAACTCCATTTTCTTTCATTGATTATTTCCTCAGTAAGATAACTGTTGAGCAACACATACCAAGCCTATTCTTCTCTAAATCTTCACAACTCATTCTGAGCACAATTAAAGGCATTGACTTCTTGGAATTCAGGCCCTCTGAAATTGCTTTGGCTGTGGCAATTTCCATTTCAGGAGAATTACAAGCACCAGATATGAATAAAGCAATCCTTTCTTTTCCATATATGGAGAAAGAAAGAGTCATGAAGTGTATCGAACTGATTAGAGATTTGTCATTGATTAATAATATGTATGGAAATTCATTGGCTGGTAATGTTGGTGGTTCAGTTCCTCAGAGTCCAGTTGGGGTTTTGGATGCAGCTTGTTTGAGTTACAAAACAGAAGAATTATTAACTGCAGGCTCATGTGGTAATTCTTCTTCTTCTCATGACAGTCCAAACAGCAAGAGGAGGAGACAAGATAGACCATCATCAAATGATGATTCAAGTCCATCCAGTCCTGTCAAATGA | 1095 | 39.27 | MADSFYCTENANICFDDQFDCNGTNNEFERFSISLPYRRTRDPNVDCLGSETFLGSPLESEERIRRMVEKEIEHLPTHDYLKRMLSGDLDLKFRRDAVDWIWKAHAHYSFGPLSLCLSMNYLDRFLSVYHLPMDKSWTVQLLSVACVSLAAKMEETEVPLPIDLQVEEPKFVFEAKTIQRMELLVLSRLKWKMQAITPFSFIDYFLSKITVEQHIPSLFFSKSSQLILSTIKGIDFLEFRPSEIALAVAISISGELQAPDMNKAILSFPYMEKERVMKCIELIRDLSLINNMYGNSLAGNVGGSVPQSPVGVLDAACLSYKTEELLTAGSCGNSSSSHDSPNSKRRRQDRPSSNDDSSPSSPVK | 364 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 32408441 | 32410309 | + | CaPI482276_01g018910.1 | Cam01g1891 | 118973 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam01g1891 | 364 | CDD | CYCLIN_AtCycD-like_rpt1 | 94 | 191 | - | - | |
Cam01g1891 | 364 | Pfam | Cyclin, N-terminal domain | 65 | 193 | IPR006671 | - | |
Cam01g1891 | 364 | FunFam | D2/4-type cyclin | 77 | 189 | - | - | |
Cam01g1891 | 364 | PANTHER | CYCLINS | 62 | 282 | IPR039361 | GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER) | |
Cam01g1891 | 364 | SMART | Cyclin_C_2 | 196 | 307 | IPR004367 | - | |
Cam01g1891 | 364 | MobiDBLite | consensus disorder prediction | 328 | 364 | - | - | |
Cam01g1891 | 364 | Pfam | Cyclin, C-terminal domain | 196 | 287 | IPR004367 | - | |
Cam01g1891 | 364 | FunFam | D6-type cyclin | 190 | 281 | - | - | |
Cam01g1891 | 364 | CDD | CYCLIN_AtCycD-like_rpt2 | 196 | 283 | - | - | |
Cam01g1891 | 364 | Gene3D | - | 65 | 282 | - | - | |
Cam01g1891 | 364 | SUPERFAMILY | Cyclin-like | 178 | 306 | IPR036915 | - | |
Cam01g1891 | 364 | SMART | cyclin_7 | 99 | 187 | IPR013763 | - | |
Cam01g1891 | 364 | SUPERFAMILY | Cyclin-like | 59 | 193 | IPR036915 | - | |
Cam01g1891 | 364 | Gene3D | - | 77 | 194 | - | - | |
Cam01g1891 | 364 | ProSitePatterns | Cyclins signature. | 94 | 125 | IPR048258 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam01g1752 | Cam-Chr1:31117588 | Cam01g1891 | Cam-Chr1:32408441 | 5.60E-36 | dispersed | |
Cam01g1891 | Cam-Chr1:32408441 | Cam08g2089 | Cam-Chr8:26428121 | 7.60E-47 | dispersed | |
Cam02g1197 | Cam-Chr2:23817219 | Cam01g1891 | Cam-Chr1:32408441 | 9.30E-33 | transposed | |
Cam04g0922 | Cam-Chr4:23339781 | Cam01g1891 | Cam-Chr1:32408441 | 2.30E-22 | transposed | |
Cam10g0993 | Cam-Chr10:22102980 | Cam01g1891 | Cam-Chr1:32408441 | 3.30E-52 | transposed | |
Cam01g1891 | Cam-Chr1:32408441 | Cam08g1609 | Cam-Chr8:22257233 | 1.40E-80 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam01g1891 | K18810 | - | csv:101209378 | 568.155 |