Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1937 ATGGCAGCAGCTATAGATATTTACAGTGGAATTTCGACGCCGGTTTACTCTTCGGATCCTTTTAGCGAGGAATTAATGAAAGCACTTCAACCTTTTATGAAAAGTGCTACCTCAACCTCCTCTTCTTCTTCTCCTTCTCTATCATTGCCTTCTCCTTCTGTTTCTTCTCAGTCTAGACTAAGCCCTGATTTTTGCTCCCCGTCGAGCACCCGCTTGTTTTCTCAAGGGTTCTCGGGAATTGAACAAATGGGTTTTGAGCAATCAGGTCCAATCGGGCTAAACAATCTCACCCCTTCTCAAATTCTCCAAATTCAAGCTCAAATTCAACTACCCTCACCAACTATGTCTTCCTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATTCCAGTCCCAATATCGTAACTTCCTTGCCCCTAAATCCTTCCCCATGAAGCACATCGGCTCTCCACCTAAGTCCACTAAACTCTACAGGGGAGTCCGGCAGCGGCACTGGGGAAAATGGGTGGCTGAAATCAGACTCCCTAAGAACCGAACTAGACTCTGGCTTGGGACTTTCGACACGGCCGAGGAGGCTGCTTTGGCCTATGACAAAGCTGCTTACAAGCTCCGCGGGGACTTTGCTAGGCTCAATTTCCCACATCTTAAACACCAATTCGGAGACTTCAAACCTCTTCACCCTTCTGTGGATGCCAAACTGAAAGCAATTTGTCAGGGCTTGAAACAGGGGAAAACAGAGCAGCTCTGTTCTGTTGAGGATGAAAAACCAACGACCAATCCACTTCCATTCGAATCAAACTCAGTGGCTAACAATTTTTGGGAACCAGAATTGAAAAGCGAAGTGGAAACCTCATCTTCGTCTTCATCCTCATCTCCTTCACGGTCTGAAGATTATTCCACCGGATCTTCCCCTGAGTCAAGTATCAGCTTCTTGGATTTTTCAGATTCTCAATGGGGTGAAGGAGTAGAAGCATTTTGTTTGGAAAAGTATCCTTCTGTTGAAATTGATTGGGCAGCTCTGAGTCAGCTGGCCGAATCAGAGTGTTAA 1050 45.62 MAAAIDIYSGISTPVYSSDPFSEELMKALQPFMKSATSTSSSSSPSLSLPSPSVSSQSRLSPDFCSPSSTRLFSQGFSGIEQMGFEQSGPIGLNNLTPSQILQIQAQIQLPSPTMSSFSSSSSSSSSSSFQSQYRNFLAPKSFPMKHIGSPPKSTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPHLKHQFGDFKPLHPSVDAKLKAICQGLKQGKTEQLCSVEDEKPTTNPLPFESNSVANNFWEPELKSEVETSSSSSSSSPSRSEDYSTGSSPESSISFLDFSDSQWGEGVEAFCLEKYPSVEIDWAALSQLAESEC 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 32779559 32780608 - CaPI482276_01g019370.1 Cam01g1937 119019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1937 349 PRINTS Ethylene responsive element binding protein signature 158 169 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g1937 349 PRINTS Ethylene responsive element binding protein signature 180 196 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g1937 349 FunFam Ethylene-responsive transcription factor 2 156 215 - -
Cam01g1937 349 SUPERFAMILY DNA-binding domain 157 215 IPR016177 GO:0003677(InterPro)
Cam01g1937 349 MobiDBLite consensus disorder prediction 34 62 - -
Cam01g1937 349 CDD AP2 156 216 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g1937 349 Gene3D AP2/ERF domain 157 215 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g1937 349 SMART rav1_2 157 220 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g1937 349 MobiDBLite consensus disorder prediction 280 308 - -
Cam01g1937 349 Pfam AP2 domain 157 206 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g1937 349 ProSiteProfiles AP2/ERF domain profile. 157 214 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g1937 349 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 19 342 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1937 Cam-Chr1:32779559 Cam11g1563 Cam-Chr11:28432388 5.20E-61 dispersed
Cam01g1937 Cam-Chr1:32779559 Cam08g1682 Cam-Chr8:23102991 2.50E-16 wgd
Cam01g1937 Cam-Chr1:32779559 Cam08g1550 Cam-Chr8:21734546 2.10E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51326 PF00847 AP2 7.90E-15 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1937 K09286 - csv:101211347 542.347