Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1972 ATGAAGTCCTTTCCTTTTGTCTTATTCCTCTTCAAGATACTATACCATCACCCCAAGCAAAAGAAGAATCTAAAAGTGCGGTTCCTTGTGAAGAAGTTCAACAAAGAACGCGCTCTTCTCGTGAAGTTAGCTTGGTGGTGCGTTGCTGAAGCGAGAGAGAATGAGAAGAAGTTCCACGGCGGAGCTGAATTGCCGGAACTGAAGAATCGGAAGCTGCTGCAGAGCGATTTGTTGTTGTCTGAAGAAGCCATGACGGGCAGAGGGTCATCGGGAAGGACGCCGACGTGGAAAGAAAGGGAGAACAATAAGAGGAGAGAGAGGCGACGGAGAGCCATTGCTGCTAAGATCTACACTGGTCTCAGAGCTCAGGGGAACTATAAGCTTCCTAAGCACTGTGACAACAACGAGGTCTTAAAGGCACTCTGTAATGAAGCTGGTTGGGTGGTTGAGGAAGATGGCACCACCTATCGCAAGGGATGCAAGCCACCTCCGATTGATATTGGCACTTCTGCAAATATGAGTGCCTGTTCTTCTCTTCAACCAAGCCCACAATCTTCATGCTTCCCCAGTCCTGTACCATCCTACCATGCCAGTCCTTCTTCATCCTCTTTTCCAAGCCCAACTCGATTCGATGGGAATCCATCTTCTTACCTTCTGCCTTTCCTTCAAAATATATCCTCTATACCTGCTAATCTCCCTCCTCTCAGAATATCGAACAGTGCACCTGTCACACCACCTCTTTCTTCCCCGACGTCAAGGGGTTCGAAGCGAAAGCCCGACTGGGAGTCCATTCCAAATAGCTATGTAACCTCTTTCCGCCATCCCCTCTTTGCTGTCTCTGCTCCATCAAGTCCTACAAGATGCCACCATCTTACACCCGCAACAATTCCAGAATGTGATGAGTCTGATGCTTCAACTGTAGACTCTGGCCGCTGGGTCAGTTTCCAGACTGTGGCACCTTCTGTTGCTCCTCCTTCCCCTACATTTAATCTGATGAAACCAGTTAGTCAGCAAAACTCTCTCCAAGATGCAGTTGACAGACATGGAGCAATGGGCTGGGGTGCTACATCTGATAGGGGACGAGGCTCTGAGTTTGAATTTGAGAAATTTGAGAGTGGCACAGTGAAGCCATGGGAGGGTGAGAGAATTCATGAAGTTGGGGTGGATGATTTGGAGCTTACTCTTGGGGGTGGGAAGGCCCGTGGTTAA 1209 48.88 MKSFPFVLFLFKILYHHPKQKKNLKVRFLVKKFNKERALLVKLAWWCVAEARENEKKFHGGAELPELKNRKLLQSDLLLSEEAMTGRGSSGRTPTWKERENNKRRERRRRAIAAKIYTGLRAQGNYKLPKHCDNNEVLKALCNEAGWVVEEDGTTYRKGCKPPPIDIGTSANMSACSSLQPSPQSSCFPSPVPSYHASPSSSSFPSPTRFDGNPSSYLLPFLQNISSIPANLPPLRISNSAPVTPPLSSPTSRGSKRKPDWESIPNSYVTSFRHPLFAVSAPSSPTRCHHLTPATIPECDESDASTVDSGRWVSFQTVAPSVAPPSPTFNLMKPVSQQNSLQDAVDRHGAMGWGATSDRGRGSEFEFEKFESGTVKPWEGERIHEVGVDDLELTLGGGKARG 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33020205 33023767 + CaPI482276_01g019720.1 Cam01g1972 119054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1972 402 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 89 401 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
Cam01g1972 402 MobiDBLite consensus disorder prediction 238 254 - -
Cam01g1972 402 MobiDBLite consensus disorder prediction 238 262 - -
Cam01g1972 402 MobiDBLite consensus disorder prediction 84 107 - -
Cam01g1972 402 MobiDBLite consensus disorder prediction 93 107 - -
Cam01g1972 402 Pfam BES1/BZR1 plant transcription factor, N-terminal 89 212 IPR008540 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0700 Cam-Chr3:7897565 Cam01g1972 Cam-Chr1:33020205 2.30E-55 transposed
Cam07g1042 Cam-Chr7:24740667 Cam01g1972 Cam-Chr1:33020205 6.70E-51 transposed
Cam01g1972 Cam-Chr1:33020205 Cam08g1999 Cam-Chr8:25763997 4.40E-88 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51327 PF05687 BES1_N 2.90E-64 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1972 K14503 - csv:101216171 579.326