Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1972 ATGAAGTCCTTTCCTTTTGTCTTATTCCTCTTCAAGATACTATACCATCACCCCAAGCAAAAGAAGAATCTAAAAGTGCGGTTCCTTGTGAAGAAGTTCAACAAAGAACGCGCTCTTCTCGTGAAGTTAGCTTGGTGGTGCGTTGCTGAAGCGAGAGAGAATGAGAAGAAGTTCCACGGCGGAGCTGAATTGCCGGAACTGAAGAATCGGAAGCTGCTGCAGAGCGATTTGTTGTTGTCTGAAGAAGCCATGACGGGCAGAGGGTCATCGGGAAGGACGCCGACGTGGAAAGAAAGGGAGAACAATAAGAGGAGAGAGAGGCGACGGAGAGCCATTGCTGCTAAGATCTACACTGGTCTCAGAGCTCAGGGGAACTATAAGCTTCCTAAGCACTGTGACAACAACGAGGTCTTAAAGGCACTCTGTAATGAAGCTGGTTGGGTGGTTGAGGAAGATGGCACCACCTATCGCAAGGGATGCAAGCCACCTCCGATTGATATTGGCACTTCTGCAAATATGAGTGCCTGTTCTTCTCTTCAACCAAGCCCACAATCTTCATGCTTCCCCAGTCCTGTACCATCCTACCATGCCAGTCCTTCTTCATCCTCTTTTCCAAGCCCAACTCGATTCGATGGGAATCCATCTTCTTACCTTCTGCCTTTCCTTCAAAATATATCCTCTATACCTGCTAATCTCCCTCCTCTCAGAATATCGAACAGTGCACCTGTCACACCACCTCTTTCTTCCCCGACGTCAAGGGGTTCGAAGCGAAAGCCCGACTGGGAGTCCATTCCAAATAGCTATGTAACCTCTTTCCGCCATCCCCTCTTTGCTGTCTCTGCTCCATCAAGTCCTACAAGATGCCACCATCTTACACCCGCAACAATTCCAGAATGTGATGAGTCTGATGCTTCAACTGTAGACTCTGGCCGCTGGGTCAGTTTCCAGACTGTGGCACCTTCTGTTGCTCCTCCTTCCCCTACATTTAATCTGATGAAACCAGTTAGTCAGCAAAACTCTCTCCAAGATGCAGTTGACAGACATGGAGCAATGGGCTGGGGTGCTACATCTGATAGGGGACGAGGCTCTGAGTTTGAATTTGAGAAATTTGAGAGTGGCACAGTGAAGCCATGGGAGGGTGAGAGAATTCATGAAGTTGGGGTGGATGATTTGGAGCTTACTCTTGGGGGTGGGAAGGCCCGTGGTTAA 1209 48.88 MKSFPFVLFLFKILYHHPKQKKNLKVRFLVKKFNKERALLVKLAWWCVAEARENEKKFHGGAELPELKNRKLLQSDLLLSEEAMTGRGSSGRTPTWKERENNKRRERRRRAIAAKIYTGLRAQGNYKLPKHCDNNEVLKALCNEAGWVVEEDGTTYRKGCKPPPIDIGTSANMSACSSLQPSPQSSCFPSPVPSYHASPSSSSFPSPTRFDGNPSSYLLPFLQNISSIPANLPPLRISNSAPVTPPLSSPTSRGSKRKPDWESIPNSYVTSFRHPLFAVSAPSSPTRCHHLTPATIPECDESDASTVDSGRWVSFQTVAPSVAPPSPTFNLMKPVSQQNSLQDAVDRHGAMGWGATSDRGRGSEFEFEKFESGTVKPWEGERIHEVGVDDLELTLGGGKARG 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33020205 33023767 + CaPI482276_01g019720.1 Cam01g1972 119054

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1972 402 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 89 401 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
Cam01g1972 402 MobiDBLite consensus disorder prediction 238 254 - -
Cam01g1972 402 MobiDBLite consensus disorder prediction 238 262 - -
Cam01g1972 402 MobiDBLite consensus disorder prediction 84 107 - -
Cam01g1972 402 MobiDBLite consensus disorder prediction 93 107 - -
Cam01g1972 402 Pfam BES1/BZR1 plant transcription factor, N-terminal 89 212 IPR008540 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1972 K14503 - - csv:101216171 579.326
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g0700 Cam-Chr3:7897565 Cam01g1972 Cam-Chr1:33020205 2.30E-55 transposed
Cam07g1042 Cam-Chr7:24740667 Cam01g1972 Cam-Chr1:33020205 6.70E-51 transposed
Cam01g1972 Cam-Chr1:33020205 Cam08g1999 Cam-Chr8:25763997 4.40E-88 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam08g1999 . 1 310 BZR Transcription Factor Family AT1G75080 60.3 4.1e-87 318.5
Cam01g1972 . 111 402 BZR Transcription Factor Family AT1G75080 59.2 1.3e-80 297.0
Cam08g1999 . 1 311 BZR Transcription Factor Family AT1G19350 58.8 2.2e-85 312.8
Cam01g1972 . 111 400 BZR Transcription Factor Family AT1G19350 59.5 4.5e-78 288.5
Cam01g1972 . 89 402 BZR Transcription Factor Family AT3G50750 57.7 2.4e-77 285.8
Cam08g1999 . 1 305 BZR Transcription Factor Family AT3G50750 50.5 3.5e-60 228.8
Cam07g1042 . 227 475 BZR Transcription Factor Family AT4G18890 54.2 1.2e-49 193.4
Cam03g0700 . 80 327 BZR Transcription Factor Family AT4G18890 51.8 5.2e-48 188.0
Cam07g1042 . 151 475 BZR Transcription Factor Family AT1G78700 73.1 2.8e-117 418.7
Cam03g0700 . 1 327 BZR Transcription Factor Family AT1G78700 67.8 1.4e-103 373.2
Cam01g1972 . 111 283 BZR Transcription Factor Family AT4G36780 79.1 3.8e-64 241.9
Cam08g1999 . 33 204 BZR Transcription Factor Family AT4G36780 59.9 1.7e-40 163.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009316 0 1 1 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51327 PF05687 BES1_N 2.90E-64 No_clan Cam TF