Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1978 ATGGCGGCCATGAATCTCCGACCCGACGGCGACAATTCACAACTCATTTCCCATATCTACAACCCTGAAATTTACACCCAAATGTTACCCCAACAAGGTACGGCGGAGGGGAATAAGCCGCCGAAGCGGCGGAGGAGGAGGAGCAAAGCGAAGGAGGGGGGCGGAGCCGGGGCGGCGGGGTTGAAGAAGAGGAAGCTGAGTTCAGAGCAAGTGAAGCTTTTGGAGATAAATTTTGGCAACGAACACAAATTGGAATCGGAGAGGAAAGATCGGTTGGCTTCTGAATTGGGACTTGATCCACGGCAAGTCGCCGTCTGGTTTCAGAACCGCCGTGCACGGTGGAAGAATAAGAAGCTGGAAGAGGAATATTCCACTCTTAAAAAAGCTCATGATTCTGTTCTTCTCCAAAATTCCCATCTTGAATCTGAGTTGGTGAAAGTGAAGGAGCAATTGAAAGAAGCAAAAAATGAAATAAAAAAATTGGGAGAAGGAAGCGAGAGAATTTCAAGCAATAACAGTCCGAGCTCTTCGGTAACAATGGAAGCAGTGGAAGCAGTGCCTTTGGGAGAGCTATTTTTGGAAGAATATGAAGATGTATTCTATTGCATGCAAGACAACAATTACAATCAAGGAATGGACTGGCTTAATCTTAATTATATGTAG 663 45.85 MAAMNLRPDGDNSQLISHIYNPEIYTQMLPQQGTAEGNKPPKRRRRRSKAKEGGGAGAAGLKKRKLSSEQVKLLEINFGNEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKAHDSVLLQNSHLESELVKVKEQLKEAKNEIKKLGEGSERISSNNSPSSSVTMEAVEAVPLGELFLEEYEDVFYCMQDNNYNQGMDWLNLNYM 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33074518 33076511 + CaPI482276_01g019780.1 Cam01g1978 119060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1978 220 CDD homeodomain 64 118 IPR001356 GO:0003677(InterPro)
Cam01g1978 220 ProSiteProfiles 'Homeobox' domain profile. 57 117 IPR001356 GO:0003677(InterPro)
Cam01g1978 220 PRINTS Lambda-repressor HTH signature 97 113 IPR000047 GO:0003677(InterPro)
Cam01g1978 220 PRINTS Lambda-repressor HTH signature 88 97 IPR000047 GO:0003677(InterPro)
Cam01g1978 220 MobiDBLite consensus disorder prediction 26 64 - -
Cam01g1978 220 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 43 173 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Cam01g1978 220 ProSitePatterns 'Homeobox' domain signature. 92 115 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cam01g1978 220 FunFam homeobox-leucine zipper protein ATHB-40 56 125 - -
Cam01g1978 220 SUPERFAMILY Homeodomain-like 62 126 IPR009057 -
Cam01g1978 220 SMART HOX_1 60 121 IPR001356 GO:0003677(InterPro)
Cam01g1978 220 Pfam Homeodomain 63 116 IPR001356 GO:0003677(InterPro)
Cam01g1978 220 Coils Coil 109 171 - -
Cam01g1978 220 Gene3D - 58 125 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1978 Cam-Chr1:33074518 Cam07g0923 Cam-Chr7:22790873 6.40E-41 dispersed
Cam01g1978 Cam-Chr1:33074518 Cam10g1913 Cam-Chr10:33197246 1.30E-20 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51328 PF00046 Homeodomain 2.60E-16 CL0123 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1978 K09338 - csv:101216890 340.887