Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1979 ATGATTTTGAGCGAACGACAAGTCGTGTCTCCCATTCGGCGATTACGTGGGACCCACCGTACGGACTTCCCCACGAAAACGTCCAAAATTTTCCCGAATATTTCCGTATTACCAGAGTCACACTCTCCTACATCACTTCCTTTTCGACACCACACTCAGAGAAAGAGTGAAACTACAAAAAGGGGGGCTGTTCCAACAATGGCGGACCATTCCGATGAACAACACTCCTTCAGGACAATTGCCACTGCTTTCATTCCGTTCATTGGGGATGATGATTCTGATGATTTGGGTCCCGAGTTCGTCTTCAACATCGAACCCACTTTGCTTATTGACCCTCATTGTTTGAAGATTGGTGAAGTTATTGGGGAAGGTTCATGTTCCATTGTTTATGAAGGACTGTACGATTGTCAGCCTGTTGCCGTGAAGATCATACAGCCAATTAGAACATCATCTATAAGTCCTGAAAAGAAGGAGAGATTTCAGAGGGAGGTTATGTTGCTATCAAGAGTGAATCATGAGAACGTTATTCAGTTCATTGGTGCTTCCGTAGAGCCGACATTGATGATAATCACTGAGCTTATGAGAGGTGGAACACTCCAGAAGTACTTATGGAGCATCCGGCCAGAGACCCCAGATTTGAAGCTTTCCTTAAGTCTTGCTCTAGATCTATCACGAGTAATGGCATACTTGCATTCAAATGGCATCATTCATCGCGACTTAAAGCCAAGCAATCTACTGCTAACAGAAGACAAGCAACGGGTTAAGCTGGCCGACTTTGGGTTGGCTAGAGAGGAAATATCTGGTGAAATGACTACTGAGGCTGGTACTTACCGTTGGATGGCCCCTGAGCTATTTAGCATTGAACCATTGCCTGTTGGAGGTAAGAAATGCTATGACCACAAGGCAGATGTCTACAGCTTCTCAATAATTCTTTGGGAATTGCTGACAAACAAGACTCCATTCAAAGGCAGGAATAATGTAATGGTGGCATATGCCACAGCCAAGAACATAAGACCAAGTCTTGAGGAAATCCCAGAAGATATTGCCCCTCTCTTGCAGTCATGCTGGGCTGAGGATCCCAATGGCCGTCCAGAATTTACAGAAGTCACAGATTCTCTTTGTAATCTTCTTCAATCATTTGTGTTAAAAGAATCTTCACTTCCTAACATGGACGACAAAACAGAGGAGGAGGAGGTCGAGTGTGCATCAGAGACATCGTCTTCTCAAAGCAAGAGAGGGCCAAAGGCTGGAAGACATAGAAACTCTTCATTCTGCCTCAAATGTTGCCGCAACTTCTGCTTGTTCATAGGAGATGGGTTGTTATCCCCAGATCCAGTTTTCCTTCTTAGTTGGCAGAGGCGGTTCCACTGGTGGCGCCACCCTCTTCTTCCGCCGTACTCTGCATCTCTACCCCCGCCCGCCGCCGCCGCCTCCCGACAACCGGCACACTCGCCCTCACACACGAAGTTACTAGGTTTTGTTCTGCGGGAAGTTTGTGGTTTATTTTCTGAGCCGCAGAGATTGGATTTGGATTTCGAGAGGTCCAGAATCCACAATTCTCAACCGTTGATCTTCCAGTCAACAACCTACATACAGACACGCCATCCACCTGGACTTCCACATCATTCCTCTCAAAGCTTCTTGCGCCATGAAAGCAGGCTGTCTTTTATATTCGAATTGAACTTGATTCTTGGGATGCGAAATTATCTCCGCCGTCTTGTTGTTTCTGGACTGAATTCAACTTTTTCTTACTTCAGTCTCCCAATCCAACTTTGGTCAATGGGGACTGGGGAAGAGGGCACGCCTTCTAAAACTTCCAAACCTCCCTCTTCATCCCAGGAAATAGCTCCGACACCTTCATATCCTGATTGGTCAAGCTCAATGCAGGCTTATTATGGTGCTGGTGCTACTCCACCTCCCTTCTTTGCATCTACTGTTGCTTCTCCAACTCCCCACCCTTACCTCTGGGGAGGTCAGCATCCTTTGATGCCACCTTATGGGACTCCAGTACCTTATCCAGCTATATATCCTCCTGGGGGAGTTTATGCCCATCCCAATATCACCGTGACTCCTGGCTCTGTACCAATTAATGCAGAATATGAAGGAAAATCCCCTGATGGAAAAGAAAGGGCCTCAAAAAAATCCAAGGGCATGTCTGGAAATACTGCTTCAGGTGGTGGTAGGACCGGGGAGAGTGGAAAGGTGGCTTCAAGTTCTGGAAATGATGGTGCTTCTCAAAGTGCTGAAAGTGGTACCGAGGGCTCATCAGAAGGCAGTGATGAAAATGCTAACCAACAGGAATTTGCTGCAAATAAGAAAGGAAGCTTCAACCAGATGCTGGCAGATGGAGCCAATGCACAAAACAACACGGGCGGACCAAATGGCAAATCTTCAGTGACTGGGAAACCCATCACCTCCATTCCTGGGACTAATCTGAACATGGGAATGGATTTGTGGAATACCACCACTGCAGCTCCAGGGGCTGGAAAAGTGAGAGGGAATGCCGTCTCCTCAGCTATTGTTACAGTACCGATGGTTGGTCGTGATGGTGTGATGCCTGAACAATGGGTTCAAGACGAACGCGAGCTAAAAAGACAGAAAAGGAAGCAATCTAACCGAGAGTCTGCCAGGAGGTCGAGATTACGTAAGCAGGCGGAGTGTGAAGAGCTGCAGGCAAGAGTGCAGACATTGAACAACGAGAACCGTACTCTTAGGGATGAGTTACAAAGGCTCTCCGAGGAATGCGAAAAGCTAACATCAGAAAATACTTCCATCAAGGAAGAATTGACACGATTTTGCGGGCCAGAGGCATTAGCTAACTTCGAAAAAGGAACCACCGCGCCGCCTGCTCAATCTCGAGGCAGCGGCGAGGGCAAGGATTAA 2883 47.21 MILSERQVVSPIRRLRGTHRTDFPTKTSKIFPNISVLPESHSPTSLPFRHHTQRKSETTKRGAVPTMADHSDEQHSFRTIATAFIPFIGDDDSDDLGPEFVFNIEPTLLIDPHCLKIGEVIGEGSCSIVYEGLYDCQPVAVKIIQPIRTSSISPEKKERFQREVMLLSRVNHENVIQFIGASVEPTLMIITELMRGGTLQKYLWSIRPETPDLKLSLSLALDLSRVMAYLHSNGIIHRDLKPSNLLLTEDKQRVKLADFGLAREEISGEMTTEAGTYRWMAPELFSIEPLPVGGKKCYDHKADVYSFSIILWELLTNKTPFKGRNNVMVAYATAKNIRPSLEEIPEDIAPLLQSCWAEDPNGRPEFTEVTDSLCNLLQSFVLKESSLPNMDDKTEEEEVECASETSSSQSKRGPKAGRHRNSSFCLKCCRNFCLFIGDGLLSPDPVFLLSWQRRFHWWRHPLLPPYSASLPPPAAAASRQPAHSPSHTKLLGFVLREVCGLFSEPQRLDLDFERSRIHNSQPLIFQSTTYIQTRHPPGLPHHSSQSFLRHESRLSFIFELNLILGMRNYLRRLVVSGLNSTFSYFSLPIQLWSMGTGEEGTPSKTSKPPSSSQEIAPTPSYPDWSSSMQAYYGAGATPPPFFASTVASPTPHPYLWGGQHPLMPPYGTPVPYPAIYPPGGVYAHPNITVTPGSVPINAEYEGKSPDGKERASKKSKGMSGNTASGGGRTGESGKVASSSGNDGASQSAESGTEGSSEGSDENANQQEFAANKKGSFNQMLADGANAQNNTGGPNGKSSVTGKPITSIPGTNLNMGMDLWNTTTAAPGAGKVRGNAVSSAIVTVPMVGRDGVMPEQWVQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVQTLNNENRTLRDELQRLSEECEKLTSENTSIKEELTRFCGPEALANFEKGTTAPPAQSRGSGEGKD 960
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33079108 33091946 + CaPI482276_01g019790.1 Cam01g1979 119061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1979 960 SMART brlzneu 860 924 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g1979 960 MobiDBLite consensus disorder prediction 782 813 - -
Cam01g1979 960 MobiDBLite consensus disorder prediction 938 960 - -
Cam01g1979 960 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 867 882 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g1979 960 Gene3D Phosphorylase Kinase; domain 1 104 195 - -
Cam01g1979 960 Gene3D - 863 920 - -
Cam01g1979 960 SUPERFAMILY Leucine zipper domain 863 919 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g1979 960 FunFam BZIP transcription factor 862 913 - -
Cam01g1979 960 Pfam G-box binding protein MFMR 594 687 IPR012900 -
Cam01g1979 960 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam01g1979 960 MobiDBLite consensus disorder prediction 41 72 - -
Cam01g1979 960 CDD STKc_MAP3K-like 121 373 - -
Cam01g1979 960 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 862 925 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g1979 960 CDD bZIP_plant_GBF1 865 915 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g1979 960 MobiDBLite consensus disorder prediction 862 883 - -
Cam01g1979 960 PANTHER G-BOX-BINDING FACTOR 3-RELATED 609 948 IPR044827 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006355(PANTHER)|GO:0043565(PANTHER)|GO:0043565(InterPro)
Cam01g1979 960 SUPERFAMILY Protein kinase-like (PK-like) 108 385 IPR011009 -
Cam01g1979 960 MobiDBLite consensus disorder prediction 716 764 - -
Cam01g1979 960 Coils Coil 873 928 - -
Cam01g1979 960 Pfam Protein tyrosine and serine/threonine kinase 115 373 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam01g1979 960 PRINTS Tyrosine kinase catalytic domain signature 229 247 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam01g1979 960 PRINTS Tyrosine kinase catalytic domain signature 302 324 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam01g1979 960 PRINTS Tyrosine kinase catalytic domain signature 191 204 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam01g1979 960 PRINTS Tyrosine kinase catalytic domain signature 344 366 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam01g1979 960 MobiDBLite consensus disorder prediction 388 421 - -
Cam01g1979 960 SMART serkin_6 115 380 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam01g1979 960 Pfam bZIP transcription factor 860 922 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam01g1979 960 Gene3D Transferase(Phosphotransferase) domain 1 196 418 - -
Cam01g1979 960 MobiDBLite consensus disorder prediction 698 764 - -
Cam01g1979 960 MobiDBLite consensus disorder prediction 596 619 - -
Cam01g1979 960 ProSiteProfiles Protein kinase domain profile. 115 381 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1979 Cam-Chr1:33079108 Cam10g1299 Cam-Chr10:26466765 4.30E-81 dispersed
Cam01g1979 Cam-Chr1:33079108 Cam06g1889 Cam-Chr6:29923654 4.10E-84 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51329 PF07714 PK_Tyr_Ser-Thr 2.90E-53 CL0016 Cam TF
84900 PF07714 PK_Tyr_Ser-Thr 2.90E-53 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1979 K09060 - csv:101217128 687.567