Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1981 ATGCCAGCTGATGTAAAAGATTCGTCCATAGCTTCAGGGGAGGCCAGCGTTTCTTCTCCTGGAGCGAAATCTGCCACCAAGAAGAAAAGAAATCTGCCCGGGATGCCAGATCCGGAAGCGGAAGTAATTGCTCTGTCTCCGAAGTCCCTTTTGGCCACAAATCGATTTGTTTGCGAGATTTGCAATAAGGGGTTTCAGAGGGATCAGAATCTGCAGCTTCACCGGCGAGGTCATAATCTTCCGTGGAAGCTCCGGCAGCGGACAAGTAAGGAGGTCAAGAAGAAGGTCTATGTTTGCCCTGAGCCGTCTTGTGTTCATCACGATCCCTCCAGGGCTTTGGGTGATCTGACTGGGATTAAGAAGCACTTTTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGCGACAAGTGTTCGAAGAAATACGCTGTTCAGTCTGATTGGAAAGCCCATTCCAAAATCTGTGGCACCAGAGAGTATAAATGCGATTGTGGAACTTTGTTTTCCAGGAGGGATAGCTTCATTACACATAGAGCTTTCTGTGATGCATTGGCAGAGGAAAGTGCAAAATCTCAACCTAAGCCAGTGGATTCTCAGCCTAAACCGGATTTAGACGCCAACCCTGATGGCGATTCTCAGTCGGCGGCGGTAAAACCGAATCCAGAGCCTTCTCCACCGCCTCTGCCATCATCACCACCGGCTCCATCTCCTCCACAGTCAACTGGTGAGGTAACAACTGTGTTGCCTATTCCTAGTCAAGAGCTGTCGGAGAATCCCTCGCAATGTATGGAAGAGGCGCTGGGTACACCCGGTTTGAGTGGGAGCAGCAGTAGCAGCAAGAGCGCAAGCAGCAATAGCAGTGCGAGAACGAGTGGATTTGCTGGTTTGTTTACTTCCTCGAGTATGTCGACAGGCATTCAACCTCCAAGACCTCCTGCATTTACAGACCTAATGCAAGGCATGGCTTGTACAGATCGCTCATCAGACTATGCACCATCTTCAACCATTGAACCTATTTCTCTATGTCTTGCAATGAATCAAGGGTCATCGATCTTTGGAACTGCCAGCCAAGACCTCCGACAGTACACACCGACGCCACCGCCTGCAATGTCTGCCACAGCATTACTTCAAAAAGCAGCTCAAATGGGCGCGGCAGCATCAAATGCCTCGTTGCTTCGTGGTTTGGGTTTAGTATCATCTTCCCCTTTAGCTGCTCAGCAAGAAAGCTTGCCATGGAACCACCACCACCAAAGGCAAGTCGAACCTGATGGCCTCTCGATTGCTGCAGGGCTCGGACTTGGACTTCCCTGTGATGGAAACTCCGGATTGAAGGAATTAATGAGGGGAAACCATTCCATGTTTGCTCCAAAACATACCACACTCGATTTCCTTGGACTGGGAATGGCAGCTGGTGGCAGCCCCAACAGTGGCCTGGCTGCACTAATTACATCAGTCGGGAGCGGGGTAGACGTCGGCATAACAACCCGATCATACGGTGGTGGTGACATATCTGGCGATGACATGAACAGAAGCAACTGA 1536 50.33 MPADVKDSSIASGEASVSSPGAKSATKKKRNLPGMPDPEAEVIALSPKSLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVKKKVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESAKSQPKPVDSQPKPDLDANPDGDSQSAAVKPNPEPSPPPLPSSPPAPSPPQSTGEVTTVLPIPSQELSENPSQCMEEALGTPGLSGSSSSSKSASSNSSARTSGFAGLFTSSSMSTGIQPPRPPAFTDLMQGMACTDRSSDYAPSSTIEPISLCLAMNQGSSIFGTASQDLRQYTPTPPPAMSATALLQKAAQMGAAASNASLLRGLGLVSSSPLAAQQESLPWNHHHQRQVEPDGLSIAAGLGLGLPCDGNSGLKELMRGNHSMFAPKHTTLDFLGLGMAAGGSPNSGLAALITSVGSGVDVGITTRSYGGGDISGDDMNRSN 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33100665 33102791 - CaPI482276_01g019810.1 Cam01g1981 119063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1981 511 MobiDBLite consensus disorder prediction 239 262 - -
Cam01g1981 511 Gene3D Classic Zinc Finger 36 103 - -
Cam01g1981 511 MobiDBLite consensus disorder prediction 11 25 - -
Cam01g1981 511 MobiDBLite consensus disorder prediction 218 238 - -
Cam01g1981 511 FunFam protein indeterminate-domain 5, chloroplastic-like 110 189 - -
Cam01g1981 511 MobiDBLite consensus disorder prediction 1 39 - -
Cam01g1981 511 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 131 155 - -
Cam01g1981 511 Pfam Zinc finger, C2H2 type 56 78 IPR013087 -
Cam01g1981 511 FunFam protein indeterminate-domain 12-like 35 103 - -
Cam01g1981 511 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 158 196 - -
Cam01g1981 511 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 78 IPR013087 -
Cam01g1981 511 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Cam01g1981 511 SMART c2h2final6 132 152 IPR013087 -
Cam01g1981 511 SMART c2h2final6 97 127 IPR013087 -
Cam01g1981 511 SMART c2h2final6 56 78 IPR013087 -
Cam01g1981 511 MobiDBLite consensus disorder prediction 185 289 - -
Cam01g1981 511 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 468 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cam01g1981 511 SUPERFAMILY beta-beta-alpha zinc fingers 55 152 IPR036236 -
Cam01g1981 511 MobiDBLite consensus disorder prediction 269 289 - -
Cam01g1981 511 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 93 127 - -
Cam01g1981 511 Gene3D Classic Zinc Finger 110 190 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1981 Cam-Chr1:33100665 Cam02g1069 Cam-Chr2:17850030 4.30E-88 dispersed
Cam01g0695 Cam-Chr1:7792728 Cam01g1981 Cam-Chr1:33100665 4.40E-61 transposed
Cam03g0231 Cam-Chr3:3350558 Cam01g1981 Cam-Chr1:33100665 5.10E-87 transposed
Cam04g1313 Cam-Chr4:26921445 Cam01g1981 Cam-Chr1:33100665 2.80E-59 transposed
Cam09g0719 Cam-Chr9:7185356 Cam01g1981 Cam-Chr1:33100665 3.30E-88 transposed
Cam01g1981 Cam-Chr1:33100665 Cam07g0929 Cam-Chr7:22954845 1.70E-129 wgd
Cam01g1981 Cam-Chr1:33100665 Cam08g1994 Cam-Chr8:25730325 2.40E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51330 PF00096 zf-C2H2 0.0052 CL0361 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1981 K25869 - csv:101217597 697.197