Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1990 ATGGCGAATATGTGTGCCGATAGTGGCAATCTTATGGCGATTGCCCAGCAAGTCATGAAGCAGCAGCAACAACAGGAGGAGCAGCAGCAACAGCACCCACAGCAGCTCACTGGACCCTGTACTTTCGGTCTCAACCCATGGAGTGCCTCGAACCATGCTCTGTCCGGTGCTCCAGATTTGGGGTTTGGGCTTTCCGGAGCTGGATTTTCCAACCCGTTTCAGGTTCAGAGAGTGGTCGACGTTGGAGAAACGAGCTTTCAGTTTCCGAACTTGGAGAACCATTCCCCTGCTTTCAGATTTTCCGATTTCGACGGCGGTACTGCTGCAGAGTTCGACTCTGATGAGTGGATGGAGAGTCTAATGGTTGGTGGAGATTCAACAGATAGCACGAATCTTCCTTCTGGTTGCGACGTGTGGCAGTCTAATTCGGATTTTGCTTTCTACGGTGCTGATCCCTTTGTCCCCTGTCCTAGTCGCTTCACTATTCCCTGTTCTTCACCCTCTGATCATAACAGAATCATTTTCCCTGACCCGCCCAAAAGTGAACCTGCCGTTGAACCGCCGTTGGTCTCGTGGACGGGGATTCCCCCGGCGACTCCTTCGGTGGTGGTTAAGGACACTCAAGTCCCTAACCCTCCCCTTGCTATTCTCAAGAGTGAAGATAACGGCGGTTCATCGAGTTCTACAGGGACTGAATCGACTCCGCTGCTACTTAAAACCCTAATTGAATGTGCTCGACTTTCTGAATCCGAGCCAGATCGAGCGGCGCAAACGTTGATTAAGCTTAAGGAATCGTTATCAGAGCACGGAGATCCGATGGAGAGGGTCGCCTTTTACTTTCTTGAAGCCCTTTGCTGGAGATTATCACTCCCATCGTATAATCGTTTGGTTTCTTGCGAATCCACTTCCGACGATTTCACTCTCTCTTACAAAGCTCTTAACGACGCTTGCCCTTACTCCAAATTCGCCCATTTGACTGCAAATCAAGCTATCCTCGAGAGTACAGATAACGCAAGCAAGATTCACATAATCGACTTCGGGATTACTCAGGGAGTTCAATGGGCGGCGCTTCTACAAGCTCTTGCAACCCGCTCCACCGGAAAACCAACCAGAATTCGGATCTCCGGCATCCCATCTCCGATGCTCGGGAACTGTCCAGCGACGGGTAACCGACTGGCCGAGTTCGCTAAACTTCTGGAACTAAACTTCGAATTCGATCCAATTCTCACTCCAATTGAAGAACTGAACGTATCATCCTTCCGAATCGACACTGACGAAACCCTCGCCGTGAATTTCATGCTTCAATTGTACAATCTCCTCGACGAACCTCCTCGCGCCGTTCTCAAAGTTCTGCAACTAGCCAAATCACTGAACCCTAAAATCGTAACCCTCGGCGAATACGAAGCGAGTCTAAACCGGGTCGGATTCTTCAACCGGTTCAAGAACGCCCTTAGATACTACTCAGCCGTGTTCGAATCGCTGGACCCAAAACTACCTCGCGACTCAAAGGAGAGACTACAACTGGAAAAGCTGGTGCTCGGCCGGCAAATCGGCGGCCTAGTCGGACCGGAATCATCGCCGGGAGCGAAAACCGATCGAATGGAAGACAAAGAAGAGTGGAAAACGTTAATGGAAAATTGCGGATTCGAGTCATTTCTTCATGGCGTTGATAGCAACGGCTTCAAAGTCTCAGAAGCAAATATGATCAACGCAATCAGATTCGGCCGTACTCCACCGCCGATTTTGCTCACATCACCTCTTCCGCCGCAGCTCCGCCGTATTTGCTCGCCTGAGCTCCGATCCCGTCAAGCGATTGGTTTTGCCACTGCACCTGAACAGAACCAAAAGGACATGGATGACTCTCAGAAGAAACCCAAGGAGACTGGAGATATAATGTCTGAGTCCTTCGGCGAAGGGTACTCAACTCGAAGCGATGAAGAAGGATTTGGAGGAACTTATGGAGGGAATCAGTCAATTGATGACGAATCTGAGAATAAAAAATCGTTTCTCCACGGGAATCAACATGAAGAATATGATAGAAGCCAAGGGAGCGAAGTGAAGGAGAAGGAGAAGTCACGCCATCAGCCTCATGCAAATTGA 2100 49.86 MANMCADSGNLMAIAQQVMKQQQQQEEQQQQHPQQLTGPCTFGLNPWSASNHALSGAPDLGFGLSGAGFSNPFQVQRVVDVGETSFQFPNLENHSPAFRFSDFDGGTAAEFDSDEWMESLMVGGDSTDSTNLPSGCDVWQSNSDFAFYGADPFVPCPSRFTIPCSSPSDHNRIIFPDPPKSEPAVEPPLVSWTGIPPATPSVVVKDTQVPNPPLAILKSEDNGGSSSSTGTESTPLLLKTLIECARLSESEPDRAAQTLIKLKESLSEHGDPMERVAFYFLEALCWRLSLPSYNRLVSCESTSDDFTLSYKALNDACPYSKFAHLTANQAILESTDNASKIHIIDFGITQGVQWAALLQALATRSTGKPTRIRISGIPSPMLGNCPATGNRLAEFAKLLELNFEFDPILTPIEELNVSSFRIDTDETLAVNFMLQLYNLLDEPPRAVLKVLQLAKSLNPKIVTLGEYEASLNRVGFFNRFKNALRYYSAVFESLDPKLPRDSKERLQLEKLVLGRQIGGLVGPESSPGAKTDRMEDKEEWKTLMENCGFESFLHGVDSNGFKVSEANMINAIRFGRTPPPILLTSPLPPQLRRICSPELRSRQAIGFATAPEQNQKDMDDSQKKPKETGDIMSESFGEGYSTRSDEEGFGGTYGGNQSIDDESENKKSFLHGNQHEEYDRSQGSEVKEKEKSRHQPHAN 699
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 33163736 33168707 + CaPI482276_01g019900.1 Cam01g1990 119072
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1990 699 MobiDBLite consensus disorder prediction 616 631 - -
Cam01g1990 699 MobiDBLite consensus disorder prediction 660 699 - -
Cam01g1990 699 Pfam GRAS domain family 238 552 IPR005202 -
Cam01g1990 699 MobiDBLite consensus disorder prediction 606 699 - -
Cam01g1990 699 ProSiteProfiles GRAS family profile. 228 606 IPR005202 -
Cam01g1990 699 Coils Coil 11 31 - -
Cam01g1990 699 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 232 551 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1990 Cam-Chr1:33163736 Cam10g0430 Cam-Chr10:6656386 7.30E-46 dispersed
Cam03g0875 Cam-Chr3:10834373 Cam01g1990 Cam-Chr1:33163736 4.20E-42 transposed
Cam03g1312 Cam-Chr3:26880222 Cam01g1990 Cam-Chr1:33163736 4.90E-30 transposed
Cam07g0944 Cam-Chr7:23255829 Cam01g1990 Cam-Chr1:33163736 7.00E-162 transposed
Cam08g0989 Cam-Chr8:15939172 Cam01g1990 Cam-Chr1:33163736 2.40E-32 transposed
Cam10g0365 Cam-Chr10:5912961 Cam01g1990 Cam-Chr1:33163736 1.50E-40 transposed
Cam11g0755 Cam-Chr11:9384547 Cam01g1990 Cam-Chr1:33163736 1.10E-43 transposed
Cam01g1990 Cam-Chr1:33163736 Cam07g0925 Cam-Chr7:22823820 4.30E-14 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51331 PF03514 GRAS 4.30E-94 CL0063 Cam TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1990 - - - 0.0