Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g1996 ATGGCCTCCATTTTGCTTGAATCGAATATGAAAGAGAACAACAAGGCTTTCACATGTAGGCTTGGGAGGTCATATCTTGGAGTCCTTGATGATGCACAAAGCTCTCCATCTCTACTTGATATTCCGTTTTCAGGTATTGATAATATTGTTACTCTAGAAGAGAAAAGCCTGAAAGTAATTGAGTTCACTAGTATCTGGTCATCATCCCCCAATATTTTGACGTTTAAGTCATACTTAATTTGCAACAGAAATGCTGTGCGATGGTTGGCCGTTCGCGGGCTAGTTGTACCTACCCTTCATAGTTGCAATCGGGGCAAAGAAATGTCTCCACCAGCTGCCAACTTTTTATTATTTGGTGCATATCACATGGTCGATTCAGGAGTAGTTGATGCAACGATTATGCATTTATGCGAAATTTGCTGGGCGATGCACTGCCCTAACTGCTTTTCCTTTCAGAGATGCATTCAAAGCAGGTGGCGTATTTTGCAAGCGACTCCATTCCTTAAATTCATTCTCTCCCGCTCGTTTATAATTCACCATCACTCAGGAGGGTTTTGTTCTTGCTCGTTCCTCTGCACCACTTCTCATTCCATGGTTCCTCCAAGCGACTTGGCAGTCCTGCTGTCGACGGAAATGGGCGCCTTATCCGGCTCGGATCACTGGCGGGGAGCGTTTGTCAAGGAATCGAAAAAGTTAGTGGATGAACCCTATCGACATCACTCGGAAGGAGTTTCCAGCGCAGAACACAATGCAGGAAATAAAGGGAGGTGGATTCATAGTCGCCGACGGCTCGAATTACAAGTATCAAAGACTCTACAAGAATATTCCTTAAATTCAAATGAACTCGGAGCTTTTCAATTACTGAAGTTGCGTGGTCTGACAAGTGACGCATTTGGCAAGCCACACATTTCTGATGTATTCATTCCCGCCCGCTTCTTTCTCCTTCACCATCCGTCAGGAGGCTCGTTCCCTTCTCGTTCATGGCTGCTTCATTTTCCCTGGAAGATTTACGGTGCAGAGGCGGCGTGGATAATGGGTTTGCTTAGTATCATTCGAAAAATTAAGAGGAAAGAAAAGGAAATGCGTATACTTATGGTAGGCCTCGACAACTCTGGGAAAACAACCATCGTTTTGAAAATTAATGGGGAGGATACCAGCGTTATCAGCCCTACACTTGGATTTAATATCAAGACCATCACCTATCACAAGTACATACTTAACATATGGGATGTTGGAGGCCAAAAGACTATAAGATCATATTGGAGGAACTATTTTGAGCAAACGGATGGACTAGTATGGGTAGTTGACAGTTCTGATCTTAGAAGATTGGATGATTGCAAATCGGAACTTGATAATCTTTTGAAAGAAGAGAGGCTTTCTGGAGCGTCATTGCTTATTCTAGCTAATAAGCAGGATATAAAAGGAGCCCTTTCTCCAGAGGAAATTGCTAAGGTATTGAATTTGGAGGCCATGGACAAAACACGGCACTGGAAAATTGTTGGTTGTAGTGCTTACACTGCTCCGAACTGCAGCAGCAAATTGGTGTACCCTTTGTTTGTCAATCCCTGTGCAGCATACCACATTGTTTTTGAAGCAAAAGACGCGAACAGCTGGTGGAACGGTTAG 1626 43.67 MASILLESNMKENNKAFTCRLGRSYLGVLDDAQSSPSLLDIPFSGIDNIVTLEEKSLKVIEFTSIWSSSPNILTFKSYLICNRNAVRWLAVRGLVVPTLHSCNRGKEMSPPAANFLLFGAYHMVDSGVVDATIMHLCEICWAMHCPNCFSFQRCIQSRWRILQATPFLKFILSRSFIIHHHSGGFCSCSFLCTTSHSMVPPSDLAVLLSTEMGALSGSDHWRGAFVKESKKLVDEPYRHHSEGVSSAEHNAGNKGRWIHSRRRLELQVSKTLQEYSLNSNELGAFQLLKLRGLTSDAFGKPHISDVFIPARFFLLHHPSGGSFPSRSWLLHFPWKIYGAEAAWIMGLLSIIRKIKRKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTITYHKYILNIWDVGGQKTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKSELDNLLKEERLSGASLLILANKQDIKGALSPEEIAKVLNLEAMDKTRHWKIVGCSAYTAPNCSSKLVYPLFVNPCAAYHIVFEAKDANSWWNG 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33202561 33212161 - CaPI482276_01g019960.1 Cam01g1996 119078

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g1996 541 CDD Arl2 347 509 IPR045873 GO:0003924(InterPro)
Cam01g1996 541 PRINTS GTP-binding SAR1 protein signature 390 414 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam01g1996 541 PRINTS GTP-binding SAR1 protein signature 417 442 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam01g1996 541 PRINTS GTP-binding SAR1 protein signature 362 385 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam01g1996 541 PRINTS GTP-binding SAR1 protein signature 462 483 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam01g1996 541 FunFam ADP-ribosylation factor-like 2, arl2 348 518 - -
Cam01g1996 541 Pfam ADP-ribosylation factor family 348 508 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
Cam01g1996 541 SMART arf_sub_2 345 526 - -
Cam01g1996 541 NCBIfam small GTP-binding protein domain 359 493 IPR005225 GO:0005525(InterPro)
Cam01g1996 541 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 509 IPR027417 -
Cam01g1996 541 PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 2-RELATED 345 511 IPR044612 GO:0003924(InterPro)|GO:0005525(PANTHER)|GO:0005737(PANTHER)|GO:0006457(PANTHER)|GO:0015630(PANTHER)
Cam01g1996 541 ProSiteProfiles small GTPase Arf family profile. 354 523 - -
Cam01g1996 541 Gene3D - 348 515 IPR027417 -
Cam01g1996 541 SMART sar_sub_1 341 540 IPR006689 GO:0003924(InterPro)|GO:0005525(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g1996 K07943 - - csv:101219492 306.605
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1996 Cam-Chr1:33202561 Cam02g0665 Cam-Chr2:7763329 9.30E-33 dispersed
Cam01g1994 Cam-Chr1:33188496 Cam01g1996 Cam-Chr1:33202561 3.90E-88 proximal
Cam01g1996 Cam-Chr1:33202561 Cam01g1997 Cam-Chr1:33213915 5.30E-12 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g974 . . . . . . . . . . . Cma07g00488 . Car07g00429 Sed14g1119 Cpe19g00808 . Bhi03g01298 Tan03g1980 Cmetu08g1666 . Hepe04g1514 . . Cla01g01908 Cam01g1996 Cec04g1649 . . . Cre04g1565 . . Cone6ag1622 Cone9ag1547 Lsi01g00674 . . Cme08g00848 . . . . . . . . . . Cmo07g00486 . . . . . . . . . . . . . . . . . . . . . Csa06g03240 Chy02g00649 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004650 3 1 1 1 1 2 1 1 2 1 2 1 1 1 2 1 1 2 1 2 1 1 1 1 2 1 2 2 1 1 41