Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam01g2000 ATGGAGACGAGAGGTGAAGATGAGGAAATAGGAACTCCTAATTCCCCTTTGTGCTATAATAATCCATCATCAAATAGGGAATCTTCAACCAAACTGCCTAATTCTGATAATCCATTTCTAACAACAGCTGCTGATAGAAGAAGAGATCACACAGTACCCCAACTCCATTTCTCTCATCACCACAAACTGAATCTCCATCATATACACAAACAACACACAAGAGACCATCCTGAAGCAACCCCCGATCCTCCAATCCAGCCCTCCATTTCTGCCTCACCACCATCTGCTGTCACTCCGCCGCTGCCAATTGCCAGCAGTAGACTGATCTCAAGAACACCACCATTTCCAGGTGCAACGGACAACAGTATTCCTTCATCGGTAATTCGATACCGAGAATGTCTGAAGAACCACGCAGCAAGTACCGGAGGCCATGTTCTCGATGGCTGCGGCGAGTTCATGCCTAATGGAGAAGATGGAACGCCTGAGGCCTTGAAGTGTGCCGCCTGTGAATGCCATCGAAACTTTCACCGGAAAGAGATGAAAGATGATCCACCCTCGCAGCAAGCTTTACCCAGTGGTTTCTTCATCTCCAACTCCATCAGAAACAATGGCCACCACACTGATAGGACACCAGTTGTTCCAGTGTCCCGTCACCATCAATTGCCGGCGGTTCCAATTTCTTCAATGATGATGGCATTTGGTGGGGGAAGCAATGGAGCTCCGGATGAGTCTTCGAGTGAGGACCTGAACATGTATCACCCGTCAAATAATGGAGCCCGGGACCTGTTCGGTCAGCAGACACAACTAACAAAGAAACGATTTAGGACAAAGTTCACTCAGGGACAGAAGGACAAGATGGTAGAATTTGCTGAAAAGTTGGGGTGGAAGATTCAGAAACATGACGAACTGGAAGTGCAGCAGTTCTGCGCTGAGGTGGGAGTAAGGAGGCAGGTTTTCAAGGTTTGGATGCACAACAACAAACAAGCCATGAAGAAGAAACAAATGTAA 1008 47.52 METRGEDEEIGTPNSPLCYNNPSSNRESSTKLPNSDNPFLTTAADRRRDHTVPQLHFSHHHKLNLHHIHKQHTRDHPEATPDPPIQPSISASPPSAVTPPLPIASSRLISRTPPFPGATDNSIPSSVIRYRECLKNHAASTGGHVLDGCGEFMPNGEDGTPEALKCAACECHRNFHRKEMKDDPPSQQALPSGFFISNSIRNNGHHTDRTPVVPVSRHHQLPAVPISSMMMAFGGGSNGAPDESSSEDLNMYHPSNNGARDLFGQQTQLTKKRFRTKFTQGQKDKMVEFAEKLGWKIQKHDELEVQQFCAEVGVRRQVFKVWMHNNKQAMKKKQM 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 33246538 33247545 + CaPI482276_01g020000.1 Cam01g2000 119082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam01g2000 335 MobiDBLite consensus disorder prediction 65 97 - -
Cam01g2000 335 FunFam Zinc-finger homeodomain protein 2 261 332 - -
Cam01g2000 335 Pfam ZF-HD protein dimerisation region 128 180 IPR006456 -
Cam01g2000 335 MobiDBLite consensus disorder prediction 14 41 - -
Cam01g2000 335 SUPERFAMILY Homeodomain-like 267 332 IPR009057 -
Cam01g2000 335 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 130 179 IPR006456 -
Cam01g2000 335 MobiDBLite consensus disorder prediction 80 97 - -
Cam01g2000 335 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 95 329 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Cam01g2000 335 Gene3D - 260 332 - -
Cam01g2000 335 MobiDBLite consensus disorder prediction 1 41 - -
Cam01g2000 335 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 129 180 IPR006456 -
Cam01g2000 335 NCBIfam homeobox domain, ZF-HD class 271 328 IPR006455 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2000 Cam-Chr1:33246538 Cam08g1605 Cam-Chr8:22183147 5.20E-42 dispersed
Cam01g2000 Cam-Chr1:33246538 Cam07g0875 Cam-Chr7:21753348 7.80E-46 wgd
Cam01g2000 Cam-Chr1:33246538 Cam08g1972 Cam-Chr8:25579420 1.60E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
51333 PF04770 ZF-HD_dimer 9.90E-31 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam01g2000 - - - 0.0